Wall clock time and date at job start Wed Apr 15 2020 11:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39128 * 125.28227 * 2 1 4 4 C 1.41516 * 126.96178 * 0.03095 * 3 2 1 5 5 N 1.31261 * 119.99867 * 235.85029 * 4 3 2 6 6 N 1.40097 * 119.99888 * 357.38918 * 5 4 3 7 7 C 1.34782 * 119.99890 * 185.96216 * 6 5 4 8 8 O 1.22105 * 120.00153 * 0.02562 * 7 6 5 9 9 C 1.39725 * 119.99778 * 180.02562 * 7 6 5 10 10 H 1.07998 * 120.00180 * 0.02562 * 9 7 6 11 11 C 1.40051 * 119.99957 * 180.02562 * 9 7 6 12 12 N 1.30702 * 119.99821 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00056 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47314 * 59.99666 * 13 11 9 15 15 H 1.48498 * 109.47053 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46699 * 299.99692 * 13 11 9 17 17 C 1.47442 * 106.07248 * 180.29487 * 3 2 1 18 18 C 1.39317 * 133.90427 * 180.56607 * 17 3 2 19 19 C 1.37920 * 119.66326 * 179.53773 * 18 17 3 20 20 C 1.38633 * 120.24114 * 359.69392 * 19 18 17 21 21 C 1.38026 * 120.64978 * 359.97236 * 20 19 18 22 22 C 1.38996 * 119.97908 * 0.02774 * 21 20 19 23 23 N 1.34517 * 125.28547 * 180.02562 * 2 1 3 24 24 C 1.46507 * 124.61665 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.46703 * 89.97780 * 1 2 3 26 26 H 1.08995 * 109.47370 * 209.97771 * 1 2 3 27 27 H 1.09001 * 109.47105 * 329.98124 * 1 2 3 28 28 H 1.08002 * 120.00430 * 55.57258 * 4 3 2 29 29 H 0.96994 * 120.00155 * 5.96341 * 6 5 4 30 30 H 0.96995 * 119.99959 * 180.02562 * 12 11 9 31 31 H 1.07999 * 120.17011 * 359.23125 * 18 17 3 32 32 H 1.07997 * 119.87938 * 179.71136 * 19 18 17 33 33 H 1.07995 * 119.67182 * 180.02562 * 20 19 18 34 34 H 1.07990 * 120.01098 * 180.02562 * 21 20 19 35 35 H 1.08997 * 109.47428 * 90.01900 * 24 23 2 36 36 H 1.08998 * 109.46767 * 210.02310 * 24 23 2 37 37 H 1.09005 * 109.46922 * 330.01917 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.1357 0.0000 4 6 1.8790 2.4835 0.0006 5 7 2.2862 3.3034 -0.9401 6 7 3.1909 2.8591 -1.9131 7 6 3.7017 3.7299 -2.8061 8 8 3.3762 4.9062 -2.7667 9 6 4.6036 3.2867 -3.7769 10 1 4.8911 2.2463 -3.8120 11 6 5.1347 4.1916 -4.7044 12 7 4.7864 5.4507 -4.6623 13 14 6.3399 3.5990 -6.0027 14 1 5.6906 2.5621 -6.8444 15 1 6.7514 4.7431 -6.8553 16 1 7.5365 3.0207 -5.3401 17 6 3.7029 0.6506 -0.0073 18 6 4.9455 1.2805 -0.0007 19 6 6.0962 0.5203 -0.0015 20 6 6.0185 -0.8639 -0.0024 21 6 4.7936 -1.4999 -0.0019 22 6 3.6224 -0.7514 -0.0011 23 7 2.2840 -1.0980 -0.0005 24 6 1.7806 -2.4739 -0.0006 25 1 -0.3633 0.0004 -1.0278 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 1.2111 2.8363 0.7725 29 1 3.4497 1.9249 -1.9442 30 1 5.1539 6.0774 -5.3049 31 1 5.0074 2.3588 0.0000 32 1 7.0613 1.0050 -0.0011 33 1 6.9255 -1.4502 -0.0026 34 1 4.7451 -2.5787 -0.0022 35 1 1.6557 -2.8151 -1.0282 36 1 2.4916 -3.1209 0.5132 37 1 0.8199 -2.5093 0.5133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408810101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:33 Heat of formation + Delta-G solvation = 65.477622 kcal Electronic energy + Delta-G solvation = -22013.457416 eV Core-core repulsion = 18757.367965 eV Total energy + Delta-G solvation = -3256.089451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32650 -37.46658 -37.08477 -35.41244 -32.78876 -32.20620 -31.20573 -30.38386 -29.80619 -27.04107 -26.86989 -25.69016 -22.49914 -21.87702 -20.77509 -20.10170 -18.36991 -17.52716 -16.84910 -16.26925 -15.68442 -15.39156 -15.20711 -14.74657 -14.26153 -13.79181 -13.73595 -13.36504 -13.06645 -13.04944 -12.77366 -12.63929 -12.52960 -12.43763 -12.08254 -11.47859 -11.32127 -11.11682 -11.00871 -10.78032 -10.49159 -10.39210 -10.32252 -9.38754 -9.28625 -8.86286 -8.00333 -7.58226 -7.55330 -6.89150 -6.26669 -4.82306 1.22935 1.78498 2.36625 2.77701 3.10564 3.16970 3.19568 3.21622 3.99826 4.11792 4.40093 4.55833 4.60233 4.65204 4.76734 4.94200 5.11319 5.13394 5.25318 5.36970 5.47663 5.58857 5.67080 5.69509 5.83595 5.95244 6.01352 6.03517 6.25717 6.49885 6.63397 6.84246 6.93918 6.98779 7.08196 7.32339 7.34914 7.38673 8.05813 8.18881 8.88445 8.96363 9.54106 10.51610 10.85277 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.005496 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.082848 B = 5093.021131 C = 5937.210386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.099 3.901 3 C -0.178 4.178 4 C 0.051 3.949 5 N -0.192 5.192 6 N -0.589 5.589 7 C 0.560 3.440 8 O -0.561 6.561 9 C -0.535 4.535 10 H 0.066 0.934 11 C 0.090 3.910 12 N -0.745 5.745 13 Si 0.912 3.088 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.265 1.265 17 C -0.084 4.084 18 C -0.061 4.061 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.132 4.132 22 C 0.086 3.914 23 N -0.470 5.470 24 C 0.075 3.925 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.372 0.628 30 H 0.273 0.727 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -17.732 9.830 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.015 4.015 3 C -0.187 4.187 4 C -0.159 4.159 5 N 0.000 5.000 6 N -0.337 5.337 7 C 0.368 3.632 8 O -0.442 6.442 9 C -0.572 4.572 10 H 0.084 0.916 11 C -0.133 4.133 12 N -0.372 5.372 13 Si 0.736 3.264 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.190 1.190 17 C -0.089 4.089 18 C -0.080 4.080 19 C -0.160 4.160 20 C -0.122 4.122 21 C -0.152 4.152 22 C -0.018 4.018 23 N -0.152 5.152 24 C -0.067 4.067 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.175 0.825 29 H 0.210 0.790 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.671 -16.019 9.273 18.870 hybrid contribution 0.861 -1.853 -0.448 2.091 sum -2.811 -17.872 8.824 20.129 Atomic orbital electron populations 1.20464 0.87403 1.03501 1.03283 1.20968 0.93207 0.84975 1.02336 1.18902 0.90485 0.93110 1.16219 1.22899 1.05072 0.89218 0.98729 1.75349 1.01029 1.27011 0.96611 1.47960 1.43529 1.11900 1.30301 1.16452 0.81703 0.84991 0.80027 1.90743 1.63232 1.16631 1.73579 1.19495 1.26828 0.96561 1.14317 0.91551 1.25716 0.95917 0.94194 0.97491 1.70070 1.34029 1.02841 1.30299 0.86350 0.80743 0.78999 0.80277 1.19107 1.20282 1.18971 1.19088 0.93031 0.91704 1.05116 1.20696 0.90265 1.00180 0.96859 1.20928 0.98147 0.93611 1.03275 1.20762 0.96219 0.94604 1.00640 1.19935 0.89897 0.98343 1.07066 1.18171 0.83749 0.93919 1.05958 1.43128 1.04093 1.05763 1.62254 1.21948 1.00872 0.80837 1.03059 0.90323 0.91584 0.89246 0.82458 0.79046 0.91651 0.85692 0.85897 0.86015 0.86827 0.91231 0.90153 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.83 36.01 0.35 -0.51 16 2 C 0.10 1.35 6.93 -81.09 -0.56 0.79 16 3 C -0.18 -3.03 5.09 -104.57 -0.53 -3.56 16 4 C 0.05 0.94 10.85 -16.55 -0.18 0.76 16 5 N -0.19 -4.58 11.19 31.05 0.35 -4.23 16 6 N -0.59 -15.25 5.41 28.73 0.16 -15.10 16 7 C 0.56 17.13 7.62 -15.70 -0.12 17.01 16 8 O -0.56 -19.46 15.17 4.82 0.07 -19.39 16 9 C -0.54 -15.63 9.20 -38.35 -0.35 -15.98 16 10 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 11 C 0.09 2.54 5.49 -17.35 -0.10 2.45 16 12 N -0.74 -22.52 11.69 55.55 0.65 -21.87 16 13 Si 0.91 20.21 29.56 -169.99 -5.02 15.18 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 C -0.08 -1.48 4.97 -104.92 -0.52 -2.00 16 18 C -0.06 -1.11 8.98 -39.30 -0.35 -1.46 16 19 C -0.14 -2.16 10.04 -39.55 -0.40 -2.55 16 20 C -0.10 -1.37 10.02 -39.51 -0.40 -1.76 16 21 C -0.13 -1.74 9.88 -39.38 -0.39 -2.12 16 22 C 0.09 1.30 6.77 -83.86 -0.57 0.73 16 23 N -0.47 -6.00 3.12 -116.38 -0.36 -6.36 16 24 C 0.07 0.59 10.73 59.85 0.64 1.23 16 25 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.07 0.46 6.84 -51.93 -0.36 0.10 16 27 H 0.09 0.80 7.91 -51.93 -0.41 0.39 16 28 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.37 8.95 5.60 -182.61 -1.02 7.92 16 30 H 0.27 7.39 8.29 -40.82 -0.34 7.06 16 31 H 0.13 2.52 7.89 -52.49 -0.41 2.10 16 32 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.11 1.16 7.96 -52.49 -0.42 0.74 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.52 7.95 -51.93 -0.41 0.11 16 37 H 0.08 0.47 6.79 -51.93 -0.35 0.12 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -37.91 321.40 -7.83 -45.75 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.05 Total: 8.16 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.47 Total: -6.99 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.79 Total: -47.56 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.07 Total: -19.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.91 -7.83 -45.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408810101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.226 kcal (2) G-P(sol) polarization free energy of solvation -37.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds