Wall clock time and date at job start Wed Apr 15 2020 11:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39128 * 125.28227 * 2 1 4 4 C 1.41516 * 126.96178 * 0.03095 * 3 2 1 5 5 N 1.31261 * 119.99867 * 235.85029 * 4 3 2 6 6 N 1.40097 * 119.99888 * 357.38918 * 5 4 3 7 7 C 1.34782 * 119.99890 * 185.96216 * 6 5 4 8 8 O 1.22105 * 120.00153 * 0.02562 * 7 6 5 9 9 C 1.39725 * 119.99778 * 180.02562 * 7 6 5 10 10 H 1.07998 * 120.00180 * 0.02562 * 9 7 6 11 11 C 1.40051 * 119.99957 * 180.02562 * 9 7 6 12 12 N 1.30702 * 119.99821 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00056 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47314 * 59.99666 * 13 11 9 15 15 H 1.48498 * 109.47053 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46699 * 299.99692 * 13 11 9 17 17 C 1.47442 * 106.07248 * 180.29487 * 3 2 1 18 18 C 1.39317 * 133.90427 * 180.56607 * 17 3 2 19 19 C 1.37920 * 119.66326 * 179.53773 * 18 17 3 20 20 C 1.38633 * 120.24114 * 359.69392 * 19 18 17 21 21 C 1.38026 * 120.64978 * 359.97236 * 20 19 18 22 22 C 1.38996 * 119.97908 * 0.02774 * 21 20 19 23 23 N 1.34517 * 125.28547 * 180.02562 * 2 1 3 24 24 C 1.46507 * 124.61665 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.46703 * 89.97780 * 1 2 3 26 26 H 1.08995 * 109.47370 * 209.97771 * 1 2 3 27 27 H 1.09001 * 109.47105 * 329.98124 * 1 2 3 28 28 H 1.08002 * 120.00430 * 55.57258 * 4 3 2 29 29 H 0.96994 * 120.00155 * 5.96341 * 6 5 4 30 30 H 0.96995 * 119.99959 * 180.02562 * 12 11 9 31 31 H 1.07999 * 120.17011 * 359.23125 * 18 17 3 32 32 H 1.07997 * 119.87938 * 179.71136 * 19 18 17 33 33 H 1.07995 * 119.67182 * 180.02562 * 20 19 18 34 34 H 1.07990 * 120.01098 * 180.02562 * 21 20 19 35 35 H 1.08997 * 109.47428 * 90.01900 * 24 23 2 36 36 H 1.08998 * 109.46767 * 210.02310 * 24 23 2 37 37 H 1.09005 * 109.46922 * 330.01917 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.1357 0.0000 4 6 1.8790 2.4835 0.0006 5 7 2.2862 3.3034 -0.9401 6 7 3.1909 2.8591 -1.9131 7 6 3.7017 3.7299 -2.8061 8 8 3.3762 4.9062 -2.7667 9 6 4.6036 3.2867 -3.7769 10 1 4.8911 2.2463 -3.8120 11 6 5.1347 4.1916 -4.7044 12 7 4.7864 5.4507 -4.6623 13 14 6.3399 3.5990 -6.0027 14 1 5.6906 2.5621 -6.8444 15 1 6.7514 4.7431 -6.8553 16 1 7.5365 3.0207 -5.3401 17 6 3.7029 0.6506 -0.0073 18 6 4.9455 1.2805 -0.0007 19 6 6.0962 0.5203 -0.0015 20 6 6.0185 -0.8639 -0.0024 21 6 4.7936 -1.4999 -0.0019 22 6 3.6224 -0.7514 -0.0011 23 7 2.2840 -1.0980 -0.0005 24 6 1.7806 -2.4739 -0.0006 25 1 -0.3633 0.0004 -1.0278 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 1.2111 2.8363 0.7725 29 1 3.4497 1.9249 -1.9442 30 1 5.1539 6.0774 -5.3049 31 1 5.0074 2.3588 0.0000 32 1 7.0613 1.0050 -0.0011 33 1 6.9255 -1.4502 -0.0026 34 1 4.7451 -2.5787 -0.0022 35 1 1.6557 -2.8151 -1.0282 36 1 2.4916 -3.1209 0.5132 37 1 0.8199 -2.5093 0.5133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408810101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:32 Heat of formation + Delta-G solvation = 38.698593 kcal Electronic energy + Delta-G solvation = -22014.618642 eV Core-core repulsion = 18757.367965 eV Total energy + Delta-G solvation = -3257.250677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44110 -39.50282 -38.18945 -37.18941 -34.75238 -33.76837 -32.24141 -32.03463 -30.97003 -28.82768 -27.98914 -27.00044 -23.95649 -22.99878 -22.35310 -21.50383 -19.82295 -19.51250 -18.13570 -17.67442 -17.34688 -16.71277 -16.34027 -15.98281 -15.90107 -15.21070 -14.93328 -14.86149 -14.67721 -14.43591 -13.89324 -13.81203 -13.62644 -13.38420 -13.26134 -12.96584 -12.87687 -12.70903 -12.62985 -12.25020 -12.07212 -11.95318 -11.83668 -10.97748 -10.97143 -10.52288 -9.92260 -9.29308 -9.11939 -8.40296 -8.28020 -7.08777 0.07036 0.61139 1.02573 1.35177 1.40325 1.52798 1.76912 1.87489 2.16738 2.45110 2.58687 2.93479 3.68840 3.69313 3.72041 3.88671 4.10620 4.23006 4.35837 4.40254 4.45655 4.56612 4.60755 4.67392 4.71472 4.77176 4.96498 5.02960 5.06219 5.13906 5.16408 5.45857 5.55731 5.67232 5.75660 5.80773 5.86266 6.13860 6.22597 6.37942 6.68369 7.09688 7.55842 8.44265 8.66409 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.005496 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.082848 B = 5093.021131 C = 5937.210386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.138 3.862 3 C -0.254 4.254 4 C 0.112 3.888 5 N -0.274 5.274 6 N -0.591 5.591 7 C 0.546 3.454 8 O -0.623 6.623 9 C -0.562 4.562 10 H 0.079 0.921 11 C 0.033 3.967 12 N -0.798 5.798 13 Si 1.005 2.995 14 H -0.252 1.252 15 H -0.265 1.265 16 H -0.251 1.251 17 C -0.105 4.105 18 C -0.103 4.103 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.116 4.116 22 C 0.070 3.930 23 N -0.463 5.463 24 C 0.063 3.937 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.193 0.807 29 H 0.376 0.624 30 H 0.281 0.719 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -22.679 10.050 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.021 3.979 3 C -0.263 4.263 4 C -0.098 4.098 5 N -0.080 5.080 6 N -0.337 5.337 7 C 0.356 3.644 8 O -0.509 6.509 9 C -0.599 4.599 10 H 0.098 0.902 11 C -0.186 4.186 12 N -0.426 5.426 13 Si 0.822 3.178 14 H -0.176 1.176 15 H -0.189 1.189 16 H -0.175 1.175 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.161 4.161 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.034 4.034 23 N -0.143 5.143 24 C -0.077 4.077 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.210 0.790 29 H 0.215 0.785 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.922 -21.045 9.538 23.436 hybrid contribution 0.762 -0.575 -0.230 0.982 sum -3.159 -21.621 9.308 23.750 Atomic orbital electron populations 1.20705 0.84103 1.05948 1.04221 1.21494 0.94868 0.84184 0.97340 1.18985 0.91551 0.93497 1.22280 1.23633 1.00729 0.89673 0.95796 1.75392 1.04346 1.29297 0.99008 1.47194 1.44654 1.11103 1.30700 1.16841 0.81914 0.84748 0.80921 1.90664 1.65591 1.18959 1.75717 1.19960 1.27284 0.97592 1.15022 0.90238 1.27085 0.97756 0.93860 0.99879 1.70231 1.35755 1.04827 1.31800 0.84983 0.77513 0.78925 0.76351 1.17570 1.18889 1.17486 1.19250 0.92763 0.93558 1.05493 1.20518 0.92272 0.98393 1.01075 1.21160 0.97506 0.95081 1.02374 1.21148 0.98037 0.93507 0.99841 1.20414 0.88829 1.00242 1.04112 1.18422 0.85532 0.92931 1.06534 1.43508 1.03154 1.07531 1.60095 1.22411 1.02741 0.77925 1.04617 0.89853 0.87660 0.88446 0.79010 0.78503 0.90854 0.90057 0.85229 0.82336 0.82752 0.90073 0.88169 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.83 71.24 0.70 -0.71 16 2 C 0.14 3.42 6.93 42.36 0.29 3.71 16 3 C -0.25 -8.68 5.09 -19.83 -0.10 -8.78 16 4 C 0.11 4.26 10.85 85.59 0.93 5.19 16 5 N -0.27 -14.05 11.19 -55.69 -0.62 -14.67 16 6 N -0.59 -32.98 5.41 -181.05 -0.98 -33.96 16 7 C 0.55 36.00 7.62 84.60 0.64 36.65 16 8 O -0.62 -46.70 15.17 -5.66 -0.09 -46.78 16 9 C -0.56 -34.60 9.20 23.07 0.21 -34.38 16 10 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 11 C 0.03 1.91 5.49 85.30 0.47 2.38 16 12 N -0.80 -50.73 11.69 21.84 0.26 -50.47 16 13 Si 1.00 42.02 29.56 68.60 2.03 44.05 16 14 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 17 C -0.11 -3.79 4.97 -20.06 -0.10 -3.89 16 18 C -0.10 -4.02 8.98 22.45 0.20 -3.82 16 19 C -0.14 -4.46 10.04 22.29 0.22 -4.24 16 20 C -0.11 -2.56 10.02 22.31 0.22 -2.34 16 21 C -0.12 -2.64 9.88 22.40 0.22 -2.42 16 22 C 0.07 1.97 6.77 38.85 0.26 2.23 16 23 N -0.46 -10.12 3.12 -522.10 -1.63 -11.75 16 24 C 0.06 0.64 10.73 127.77 1.37 2.01 16 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.10 0.83 6.84 -2.39 -0.02 0.81 16 27 H 0.10 1.39 7.91 -2.39 -0.02 1.37 16 28 H 0.19 5.58 8.06 -2.91 -0.02 5.56 16 29 H 0.38 19.46 5.60 -213.33 -1.19 18.27 16 30 H 0.28 15.91 8.29 -92.71 -0.77 15.14 16 31 H 0.08 3.75 7.89 -2.91 -0.02 3.72 16 32 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.15 2.24 7.96 -2.92 -0.02 2.21 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.69 7.95 -2.39 -0.02 0.68 16 37 H 0.11 0.54 6.79 -2.38 -0.02 0.53 16 Total: -1.00 -93.42 321.40 4.43 -88.99 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.09 Total: 33.00 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.55 Total: -8.40 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -2.98 Total: -110.85 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.09 Total: -46.78 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -93.42 4.43 -88.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408810101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.691 kcal (2) G-P(sol) polarization free energy of solvation -93.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds