Wall clock time and date at job start Wed Apr 15 2020 11:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39991 * 120.46274 * 101.82582 * 3 2 1 5 5 C 1.38216 * 118.36579 * 179.77459 * 4 3 2 6 6 C 1.39485 * 119.20884 * 0.52237 * 5 4 3 7 7 C 1.47990 * 119.56711 * 179.74208 * 6 5 4 8 8 O 1.21531 * 120.00465 * 334.81632 * 7 6 5 9 9 N 1.34783 * 119.99755 * 154.81620 * 7 6 5 10 10 C 1.46959 * 120.59222 * 181.86057 * 9 7 6 11 11 C 1.53813 * 108.40004 * 124.75891 * 10 9 7 12 12 N 1.46966 * 108.57666 * 49.63399 * 11 10 9 13 13 C 1.36936 * 120.59011 * 124.67282 * 12 11 10 14 14 H 1.08004 * 119.99825 * 205.77432 * 13 12 11 15 15 C 1.38816 * 120.00390 * 25.77724 * 13 12 11 16 16 N 1.31625 * 119.99774 * 12.26654 * 15 13 12 17 17 Si 1.86799 * 120.00189 * 192.27011 * 15 13 12 18 18 H 1.48499 * 109.47389 * 59.99562 * 17 15 13 19 19 H 1.48497 * 109.47327 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46752 * 299.99711 * 17 15 13 21 21 C 1.46959 * 118.81606 * 304.64547 * 12 11 10 22 22 C 1.46967 * 120.59358 * 2.13628 * 9 7 6 23 23 N 1.32821 * 120.86244 * 359.71682 * 6 5 4 24 24 C 1.31297 * 121.78559 * 0.02562 * 23 6 5 25 25 H 4.52942 * 13.94645 * 0.02562 * 4 2 1 26 26 H 1.08004 * 120.81215 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.38979 * 180.21464 * 5 4 3 28 28 H 1.09005 * 109.60913 * 244.54278 * 10 9 7 29 29 H 1.09003 * 109.61491 * 5.05076 * 10 9 7 30 30 H 1.08998 * 109.73925 * 289.84701 * 11 10 9 31 31 H 1.09001 * 109.53596 * 169.30020 * 11 10 9 32 32 H 0.96993 * 119.99701 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.60765 * 295.48948 * 21 12 11 34 34 H 1.09000 * 109.75335 * 175.05332 * 21 12 11 35 35 H 1.09001 * 109.60941 * 354.95056 * 22 9 7 36 36 H 1.09004 * 109.60626 * 115.45759 * 22 9 7 37 37 H 1.08002 * 119.64918 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3156 0.2482 -1.1811 5 6 4.6968 0.2432 -1.1306 6 6 5.3327 -0.0173 0.0833 7 6 6.8112 -0.0303 0.1452 8 8 7.4592 -0.2738 -0.8538 9 7 7.4393 0.2278 1.3094 10 6 8.9070 0.2584 1.3767 11 6 9.3382 1.6155 1.9585 12 7 8.5675 1.8654 3.1846 13 6 9.2056 2.1277 4.3675 14 1 8.7182 1.9044 5.3051 15 6 10.4789 2.6806 4.3616 16 7 10.9767 3.1746 3.2477 17 14 11.4859 2.7234 5.9343 18 1 11.6988 1.3376 6.4237 19 1 12.7996 3.3607 5.6638 20 1 10.7595 3.5065 6.9660 21 6 7.0998 1.8293 3.1185 22 6 6.6686 0.4779 2.5356 23 7 4.6284 -0.2533 1.1845 24 6 3.3155 -0.2524 1.1792 25 1 -1.0500 0.0004 0.0003 26 1 2.7964 0.4425 -2.1080 27 1 5.2768 0.4337 -2.0215 28 1 9.2606 -0.5474 2.0201 29 1 9.3218 0.1394 0.3758 30 1 9.1403 2.4059 1.2345 31 1 10.4021 1.5896 2.1940 32 1 11.8665 3.5606 3.2435 33 1 6.7427 2.6350 2.4771 34 1 6.6830 1.9459 4.1189 35 1 5.6047 0.5037 2.3001 36 1 6.8664 -0.3127 3.2596 37 1 2.7774 -0.4482 2.0949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744560076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:40 Heat of formation + Delta-G solvation = 108.551971 kcal Electronic energy + Delta-G solvation = -21763.609681 eV Core-core repulsion = 18509.388074 eV Total energy + Delta-G solvation = -3254.221607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.85671 -38.95679 -36.77500 -34.73653 -33.84066 -32.47310 -31.21490 -31.04511 -29.86601 -27.08148 -25.18388 -23.93144 -23.40327 -22.64748 -20.90220 -19.44738 -19.13638 -17.54386 -16.89601 -16.35863 -15.95082 -15.44753 -15.04656 -14.86884 -14.66925 -13.92595 -13.82701 -13.59254 -13.52557 -13.23117 -13.09636 -12.56965 -12.36058 -11.95428 -11.58488 -11.20510 -11.07178 -10.82055 -10.63085 -10.56602 -10.15860 -10.09526 -10.02408 -9.88788 -9.85426 -9.07653 -8.91873 -8.55352 -8.19545 -6.67616 -5.77839 -3.25300 0.18897 0.95987 2.32787 2.41303 3.13701 3.31261 3.37668 3.43214 3.44236 3.73668 3.82441 4.13641 4.47325 4.50632 4.61631 4.85301 4.94594 5.33954 5.37443 5.49812 5.52184 5.69517 5.82793 5.94807 5.96233 6.16288 6.19797 6.35284 6.39313 6.50989 6.67930 6.82148 6.98299 7.09950 7.31849 7.49137 7.67827 7.73899 7.91457 8.41486 8.47017 9.17399 9.79638 10.34593 11.27155 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.003832 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.690630 B = 7304.648460 C = 7948.919341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.150 4.150 3 C -0.029 4.029 4 C -0.057 4.057 5 C -0.113 4.113 6 C 0.102 3.898 7 C 0.557 3.443 8 O -0.549 6.549 9 N -0.569 5.569 10 C 0.082 3.918 11 C 0.152 3.848 12 N -0.594 5.594 13 C -0.249 4.249 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.908 5.908 17 Si 0.909 3.091 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.129 3.871 22 C 0.059 3.941 23 N -0.442 5.442 24 C 0.119 3.881 25 H 0.227 0.773 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.020 0.980 31 H 0.116 0.884 32 H 0.256 0.744 33 H 0.018 0.982 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.073 -6.415 -6.592 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C -0.032 4.032 4 C -0.083 4.083 5 C -0.134 4.134 6 C -0.035 4.035 7 C 0.342 3.658 8 O -0.428 6.428 9 N -0.298 5.298 10 C -0.041 4.041 11 C 0.026 3.974 12 N -0.317 5.317 13 C -0.378 4.378 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.554 5.554 17 Si 0.739 3.261 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.002 3.998 22 C -0.065 4.065 23 N -0.153 5.153 24 C -0.040 4.040 25 H 0.243 0.757 26 H 0.163 0.837 27 H 0.170 0.830 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.038 0.962 31 H 0.134 0.866 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.016 -6.602 -6.325 19.317 hybrid contribution -0.131 0.306 0.132 0.358 sum -17.147 -6.296 -6.194 19.288 Atomic orbital electron populations 1.24929 0.95725 0.98573 0.98604 1.19696 0.91573 1.01864 1.01980 1.17111 0.87940 1.02741 0.95366 1.21646 0.93466 0.95365 0.97795 1.22017 0.94406 0.97947 0.99004 1.21515 0.94974 0.97287 0.89689 1.17842 0.85384 0.78690 0.83870 1.90753 1.65908 1.51293 1.34866 1.48019 1.08199 1.65262 1.08339 1.22771 0.77620 1.02039 1.01638 1.21505 0.99879 0.89366 0.86648 1.44064 0.99105 1.81741 1.06775 1.19241 0.99019 1.34458 0.85084 0.91386 1.25061 0.99462 0.98268 0.97233 1.69900 1.17554 1.42092 1.25836 0.86260 0.79408 0.77752 0.82673 1.21003 1.21584 1.20939 1.21346 0.86589 0.93289 0.98577 1.23391 0.98590 0.99169 0.85342 1.67766 1.07545 1.12359 1.27599 1.23133 0.89451 0.94253 0.97196 0.75664 0.83747 0.82958 0.91843 0.90096 0.96155 0.86610 0.93406 0.96390 0.91702 0.85543 0.91775 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 19.25 29.55 0.57 -0.54 16 2 C -0.15 -1.38 13.28 -38.84 -0.52 -1.90 16 3 C -0.03 -0.30 5.75 -106.68 -0.61 -0.92 16 4 C -0.06 -0.57 9.89 -38.93 -0.39 -0.96 16 5 C -0.11 -1.40 9.60 -39.12 -0.38 -1.78 16 6 C 0.10 1.56 6.42 -82.98 -0.53 1.02 16 7 C 0.56 10.45 7.58 -12.26 -0.09 10.35 16 8 O -0.55 -11.43 15.99 5.34 0.09 -11.35 16 9 N -0.57 -11.17 2.94 -173.27 -0.51 -11.68 16 10 C 0.08 1.74 6.62 -3.37 -0.02 1.72 16 11 C 0.15 3.74 5.55 -3.36 -0.02 3.72 16 12 N -0.59 -14.97 2.99 -171.77 -0.51 -15.48 16 13 C -0.25 -6.74 9.64 -15.06 -0.15 -6.89 16 14 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 15 C 0.00 -0.07 5.07 -17.43 -0.09 -0.16 16 16 N -0.91 -26.11 10.69 55.49 0.59 -25.51 16 17 Si 0.91 21.52 29.57 -169.99 -5.03 16.49 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.13 2.72 6.67 -3.60 -0.02 2.70 16 22 C 0.06 1.08 6.21 -3.60 -0.02 1.06 16 23 N -0.44 -6.13 6.41 -9.49 -0.06 -6.19 16 24 C 0.12 1.31 10.92 -17.15 -0.19 1.12 16 25 H 0.23 0.66 7.80 -54.09 -0.42 0.23 16 26 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 27 H 0.15 1.77 7.83 -52.49 -0.41 1.35 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.68 7.00 -51.93 -0.36 1.31 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.12 3.12 5.59 -51.93 -0.29 2.83 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 35 H 0.13 2.06 3.92 -79.08 -0.31 1.75 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -32.16 317.28 -7.40 -39.56 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.29 Total: 0.84 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -2.45 Total: 8.54 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.49 Total: -58.87 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.16 -7.40 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744560076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.111 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds