Wall clock time and date at job start Wed Apr 15 2020 11:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39991 * 120.46274 * 101.82582 * 3 2 1 5 5 C 1.38216 * 118.36579 * 179.77459 * 4 3 2 6 6 C 1.39485 * 119.20884 * 0.52237 * 5 4 3 7 7 C 1.47990 * 119.56711 * 179.74208 * 6 5 4 8 8 O 1.21531 * 120.00465 * 334.81632 * 7 6 5 9 9 N 1.34783 * 119.99755 * 154.81620 * 7 6 5 10 10 C 1.46959 * 120.59222 * 181.86057 * 9 7 6 11 11 C 1.53813 * 108.40004 * 124.75891 * 10 9 7 12 12 N 1.46966 * 108.57666 * 49.63399 * 11 10 9 13 13 C 1.36936 * 120.59011 * 124.67282 * 12 11 10 14 14 H 1.08004 * 119.99825 * 205.77432 * 13 12 11 15 15 C 1.38816 * 120.00390 * 25.77724 * 13 12 11 16 16 N 1.31625 * 119.99774 * 12.26654 * 15 13 12 17 17 Si 1.86799 * 120.00189 * 192.27011 * 15 13 12 18 18 H 1.48499 * 109.47389 * 59.99562 * 17 15 13 19 19 H 1.48497 * 109.47327 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46752 * 299.99711 * 17 15 13 21 21 C 1.46959 * 118.81606 * 304.64547 * 12 11 10 22 22 C 1.46967 * 120.59358 * 2.13628 * 9 7 6 23 23 N 1.32821 * 120.86244 * 359.71682 * 6 5 4 24 24 C 1.31297 * 121.78559 * 0.02562 * 23 6 5 25 25 H 4.52942 * 13.94645 * 0.02562 * 4 2 1 26 26 H 1.08004 * 120.81215 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.38979 * 180.21464 * 5 4 3 28 28 H 1.09005 * 109.60913 * 244.54278 * 10 9 7 29 29 H 1.09003 * 109.61491 * 5.05076 * 10 9 7 30 30 H 1.08998 * 109.73925 * 289.84701 * 11 10 9 31 31 H 1.09001 * 109.53596 * 169.30020 * 11 10 9 32 32 H 0.96993 * 119.99701 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.60765 * 295.48948 * 21 12 11 34 34 H 1.09000 * 109.75335 * 175.05332 * 21 12 11 35 35 H 1.09001 * 109.60941 * 354.95056 * 22 9 7 36 36 H 1.09004 * 109.60626 * 115.45759 * 22 9 7 37 37 H 1.08002 * 119.64918 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3156 0.2482 -1.1811 5 6 4.6968 0.2432 -1.1306 6 6 5.3327 -0.0173 0.0833 7 6 6.8112 -0.0303 0.1452 8 8 7.4592 -0.2738 -0.8538 9 7 7.4393 0.2278 1.3094 10 6 8.9070 0.2584 1.3767 11 6 9.3382 1.6155 1.9585 12 7 8.5675 1.8654 3.1846 13 6 9.2056 2.1277 4.3675 14 1 8.7182 1.9044 5.3051 15 6 10.4789 2.6806 4.3616 16 7 10.9767 3.1746 3.2477 17 14 11.4859 2.7234 5.9343 18 1 11.6988 1.3376 6.4237 19 1 12.7996 3.3607 5.6638 20 1 10.7595 3.5065 6.9660 21 6 7.0998 1.8293 3.1185 22 6 6.6686 0.4779 2.5356 23 7 4.6284 -0.2533 1.1845 24 6 3.3155 -0.2524 1.1792 25 1 -1.0500 0.0004 0.0003 26 1 2.7964 0.4425 -2.1080 27 1 5.2768 0.4337 -2.0215 28 1 9.2606 -0.5474 2.0201 29 1 9.3218 0.1394 0.3758 30 1 9.1403 2.4059 1.2345 31 1 10.4021 1.5896 2.1940 32 1 11.8665 3.5606 3.2435 33 1 6.7427 2.6350 2.4771 34 1 6.6830 1.9459 4.1189 35 1 5.6047 0.5037 2.3001 36 1 6.8664 -0.3127 3.2596 37 1 2.7774 -0.4482 2.0949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744560076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:39 Heat of formation + Delta-G solvation = 89.024229 kcal Electronic energy + Delta-G solvation = -21764.456467 eV Core-core repulsion = 18509.388074 eV Total energy + Delta-G solvation = -3255.068394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97202 -40.30092 -38.48766 -35.88865 -35.25136 -33.39077 -33.07391 -32.29637 -31.28318 -28.83067 -26.50868 -25.16024 -24.82775 -24.24305 -22.45921 -20.75250 -20.12365 -19.12602 -18.06490 -17.97195 -16.94166 -16.78339 -16.61936 -16.34746 -15.85547 -15.46377 -15.24220 -15.16467 -14.96093 -14.83854 -14.39525 -13.95381 -13.62695 -13.30534 -13.02582 -12.75952 -12.52255 -12.47055 -12.30272 -12.03405 -11.93254 -11.77582 -11.70933 -11.33330 -10.90720 -10.61805 -10.21718 -9.94647 -9.76503 -8.67650 -7.84730 -5.36788 -0.73936 0.10192 1.37236 1.48906 1.51555 1.58211 1.73750 1.88766 2.15254 2.50747 2.84146 2.95269 3.26315 3.27761 3.54181 3.64762 3.76761 3.92295 4.08557 4.26398 4.30209 4.42575 4.58184 4.62416 4.67102 4.73412 4.79713 4.93142 5.01217 5.08462 5.17121 5.26584 5.41031 5.56700 5.60803 5.70753 6.36070 6.36103 6.50593 6.60506 6.99945 7.09722 7.78548 8.30671 9.17924 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.003832 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.690630 B = 7304.648460 C = 7948.919341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.208 4.208 3 C -0.013 4.013 4 C -0.051 4.051 5 C -0.110 4.110 6 C 0.069 3.931 7 C 0.556 3.444 8 O -0.578 6.578 9 N -0.580 5.580 10 C 0.097 3.903 11 C 0.164 3.836 12 N -0.611 5.611 13 C -0.260 4.260 14 H 0.076 0.924 15 C -0.056 4.056 16 N -0.941 5.941 17 Si 0.977 3.023 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.275 1.275 21 C 0.127 3.873 22 C 0.073 3.927 23 N -0.459 5.459 24 C 0.116 3.884 25 H 0.265 0.735 26 H 0.176 0.824 27 H 0.154 0.846 28 H 0.066 0.934 29 H 0.080 0.920 30 H -0.009 1.009 31 H 0.090 0.910 32 H 0.251 0.749 33 H 0.009 0.991 34 H 0.077 0.923 35 H 0.154 0.846 36 H 0.065 0.935 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.709 -7.193 -6.181 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.208 4.208 3 C -0.015 4.015 4 C -0.076 4.076 5 C -0.131 4.131 6 C -0.066 4.066 7 C 0.344 3.656 8 O -0.459 6.459 9 N -0.309 5.309 10 C -0.027 4.027 11 C 0.037 3.963 12 N -0.335 5.335 13 C -0.390 4.390 14 H 0.094 0.906 15 C -0.250 4.250 16 N -0.588 5.588 17 Si 0.804 3.196 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.200 1.200 21 C 0.001 3.999 22 C -0.051 4.051 23 N -0.170 5.170 24 C -0.044 4.044 25 H 0.281 0.719 26 H 0.193 0.807 27 H 0.172 0.828 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.009 0.991 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.083 0.917 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -20.693 -7.393 -5.914 22.756 hybrid contribution 0.701 0.540 -0.065 0.888 sum -19.991 -6.853 -5.980 21.963 Atomic orbital electron populations 1.25886 0.96407 0.94873 0.95637 1.19743 0.91708 1.04665 1.04723 1.17278 0.89087 1.00189 0.94949 1.21961 0.92304 0.94200 0.99165 1.22080 0.95590 0.97481 0.97961 1.20996 0.92811 1.01312 0.91476 1.18398 0.87191 0.77233 0.82819 1.90714 1.67226 1.52314 1.35606 1.48062 1.07404 1.66100 1.09371 1.22381 0.79350 0.99779 1.01207 1.21188 0.98564 0.90346 0.86189 1.44318 1.00863 1.81991 1.06320 1.19626 0.99473 1.33873 0.86031 0.90614 1.25867 1.00602 0.98352 1.00226 1.70092 1.17548 1.43230 1.27885 0.85198 0.77406 0.77854 0.79095 1.20259 1.22175 1.20030 1.21511 0.84308 0.94698 0.99396 1.23390 0.99856 0.97135 0.84681 1.67437 1.09032 1.13121 1.27413 1.23559 0.88378 0.93724 0.98732 0.71948 0.80650 0.82814 0.91578 0.90196 0.99063 0.89262 0.93951 0.97348 0.90428 0.82991 0.91692 0.78855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 19.25 74.32 1.43 0.45 16 2 C -0.21 -3.02 13.28 30.01 0.40 -2.62 16 3 C -0.01 -0.23 5.75 -21.20 -0.12 -0.35 16 4 C -0.05 -0.90 9.89 22.69 0.22 -0.68 16 5 C -0.11 -2.63 9.60 22.57 0.22 -2.41 16 6 C 0.07 2.09 6.42 41.88 0.27 2.36 16 7 C 0.56 21.29 7.58 86.83 0.66 21.95 16 8 O -0.58 -24.80 15.99 -3.81 -0.06 -24.86 16 9 N -0.58 -23.28 2.94 -820.38 -2.41 -25.69 16 10 C 0.10 4.25 6.62 86.57 0.57 4.82 16 11 C 0.16 8.45 5.55 86.56 0.48 8.93 16 12 N -0.61 -31.61 2.99 -697.35 -2.08 -33.70 16 13 C -0.26 -14.30 9.64 84.03 0.81 -13.49 16 14 H 0.08 3.96 7.85 -2.91 -0.02 3.93 16 15 C -0.06 -3.14 5.07 84.86 0.43 -2.71 16 16 N -0.94 -55.99 10.69 21.65 0.23 -55.76 16 17 Si 0.98 44.79 29.57 68.60 2.03 46.82 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.13 5.39 6.67 86.42 0.58 5.97 16 22 C 0.07 2.64 6.21 86.41 0.54 3.18 16 23 N -0.46 -12.16 6.41 -183.94 -1.18 -13.34 16 24 C 0.12 2.28 10.92 85.18 0.93 3.21 16 25 H 0.26 -0.12 7.80 -4.42 -0.03 -0.16 16 26 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.15 3.52 7.83 -2.91 -0.02 3.50 16 28 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 29 H 0.08 3.48 7.00 -2.39 -0.02 3.47 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.09 5.09 5.59 -2.39 -0.01 5.08 16 32 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 35 H 0.15 4.83 3.92 -55.99 -0.22 4.61 16 36 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -72.05 317.28 4.81 -67.23 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.88 Total: 10.68 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 7.41 Total: 28.62 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.44 Total: -128.49 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.05 4.81 -67.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744560076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.257 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds