Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46698 * 2 1 4 4 C 1.34258 * 125.75178 * 125.00444 * 3 2 1 5 5 C 1.38042 * 107.41914 * 180.02562 * 4 3 2 6 6 C 1.47425 * 126.41775 * 179.97438 * 5 4 3 7 7 O 1.21603 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99743 * 179.97438 * 6 5 4 9 9 S 1.65602 * 119.99511 * 179.72170 * 8 6 5 10 10 O 1.42109 * 104.27511 * 181.34842 * 9 8 6 11 11 O 1.42098 * 104.28120 * 309.20840 * 9 8 6 12 12 C 1.81394 * 104.44973 * 65.28308 * 9 8 6 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 9 8 14 14 H 1.07996 * 120.00269 * 359.97438 * 13 12 9 15 15 C 1.37880 * 119.99990 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00199 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47041 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47065 * 120.00371 * 17 15 13 20 20 H 1.48497 * 109.47342 * 240.00263 * 17 15 13 21 21 C 1.41291 * 107.16396 * 0.23821 * 5 4 3 22 22 N 1.30442 * 108.02749 * 359.59410 * 21 5 4 23 23 H 1.09007 * 109.47226 * 299.99666 * 1 2 3 24 24 H 1.08994 * 109.47327 * 60.00096 * 1 2 3 25 25 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47307 * 239.99954 * 2 1 3 27 27 H 1.09004 * 109.47432 * 119.99802 * 2 1 3 28 28 H 1.07999 * 126.29316 * 0.02562 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 31 31 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 32 32 H 0.96996 * 120.00318 * 180.02562 * 16 15 13 33 33 H 1.08008 * 125.98679 * 179.74239 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0704 3.2312 0.5372 6 6 3.9312 4.2039 1.2345 7 8 4.5486 3.8677 2.2268 8 7 4.0339 5.4657 0.7723 9 16 4.9955 6.5602 1.5597 10 8 4.8334 7.7637 0.8216 11 8 4.5865 6.4729 2.9177 12 6 6.6776 5.9119 1.3585 13 6 7.6560 6.8331 2.0404 14 1 7.3014 7.7202 2.5441 15 6 9.0039 6.5435 2.0213 16 7 9.4358 5.4636 1.4075 17 14 10.2167 7.6859 2.8660 18 1 9.4824 8.8221 3.4783 19 1 10.9449 6.9401 3.9237 20 1 11.1870 8.2033 1.8679 21 6 2.2922 3.4757 -0.6165 22 7 1.6762 2.3695 -0.9298 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.3140 1.4022 1.7338 29 1 3.5411 5.7341 -0.0190 30 1 6.7404 4.9196 1.8053 31 1 6.9181 5.8483 0.2972 32 1 10.3840 5.2596 1.3943 33 1 2.2217 4.4137 -1.1474 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = -39.659689 kcal Electronic energy + Delta-G solvation = -20299.510865 eV Core-core repulsion = 16875.328602 eV Total energy + Delta-G solvation = -3424.182263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.56223 -39.16511 -36.17082 -35.10200 -34.86261 -33.91846 -33.30918 -30.77938 -29.81706 -28.99963 -24.58209 -23.58982 -23.30121 -20.93420 -20.53574 -19.06551 -18.21774 -17.21642 -16.41152 -16.26923 -15.92634 -15.56164 -14.89447 -14.70217 -14.50407 -14.37419 -14.12887 -13.91870 -13.02237 -12.84534 -12.53984 -12.49357 -12.11531 -11.91053 -11.82864 -11.41137 -11.23192 -11.17260 -11.10246 -10.90387 -10.60797 -10.39118 -9.94272 -9.80919 -9.73072 -9.11469 -8.87142 -8.67787 -6.29380 -4.40019 1.10357 1.35988 1.98373 2.10174 3.23435 3.25661 3.30623 3.36731 3.38965 4.04494 4.26689 4.49488 4.54201 4.56518 4.68471 4.77097 4.88585 5.04071 5.12202 5.19695 5.23712 5.32099 5.39406 5.60161 5.68824 6.20231 6.58693 6.66067 6.83631 7.10963 7.34046 7.46690 7.77941 7.94513 8.61489 9.26962 10.82502 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.003949 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.642963 B = 7088.985521 C = 7571.000530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.362 5.362 4 C 0.135 3.865 5 C -0.295 4.295 6 C 0.615 3.385 7 O -0.499 6.499 8 N -1.057 6.057 9 S 2.558 3.442 10 O -0.970 6.970 11 O -0.953 6.953 12 C -0.405 4.405 13 C -0.533 4.533 14 H 0.071 0.929 15 C 0.077 3.923 16 N -0.877 5.877 17 Si 0.907 3.093 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.086 3.914 22 N -0.296 5.296 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.192 0.808 29 H 0.422 0.578 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.268 0.732 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 -11.615 -5.495 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.141 5.141 4 C -0.017 4.017 5 C -0.312 4.312 6 C 0.402 3.598 7 O -0.372 6.372 8 N -0.815 5.815 9 S 2.660 3.340 10 O -0.961 6.961 11 O -0.943 6.943 12 C -0.542 4.542 13 C -0.573 4.573 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.513 5.513 17 Si 0.733 3.267 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.102 4.102 22 N -0.115 5.115 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.209 0.791 29 H 0.256 0.744 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.775 -11.942 -5.198 20.456 hybrid contribution 1.333 0.536 0.181 1.448 sum -14.442 -11.406 -5.017 19.074 Atomic orbital electron populations 1.22062 0.93409 1.03094 1.03817 1.21851 0.96405 0.76815 1.04442 1.48665 1.34317 1.10669 1.20440 1.23090 0.90936 0.93473 0.94158 1.20239 1.11754 0.95403 1.03791 1.17050 0.79599 0.80701 0.82447 1.90977 1.44417 1.77797 1.24000 1.55291 1.59865 1.24011 1.42345 1.07002 0.79225 0.73790 0.74004 1.93518 1.86886 1.42748 1.72908 1.93525 1.81478 1.85544 1.33761 1.27614 1.11071 1.08692 1.06825 1.20341 0.91433 1.08396 1.37091 0.91074 1.24923 0.98129 0.95401 0.94534 1.69966 1.15473 1.24764 1.41128 0.86284 0.80482 0.80644 0.79323 1.18956 1.20321 1.20365 1.24120 0.93744 0.97560 0.94807 1.77124 1.24037 0.96945 1.13421 0.91886 0.90925 0.90469 0.89188 0.88071 0.79082 0.74428 0.88275 0.89663 0.92260 0.79047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.09 37.16 0.37 -0.53 16 2 C 0.13 0.74 7.21 -4.04 -0.03 0.71 16 3 N -0.36 -3.62 3.65 -60.81 -0.22 -3.84 16 4 C 0.14 1.52 11.25 -16.56 -0.19 1.34 16 5 C -0.30 -3.99 6.13 -105.07 -0.64 -4.63 16 6 C 0.61 10.62 7.55 -12.52 -0.09 10.52 16 7 O -0.50 -10.52 15.00 -11.94 -0.18 -10.70 16 8 N -1.06 -17.54 5.60 30.43 0.17 -17.37 16 9 S 2.56 56.24 5.03 -107.50 -0.54 55.70 16 10 O -0.97 -22.33 18.08 -57.54 -1.04 -23.37 16 11 O -0.95 -24.03 17.03 -64.81 -1.10 -25.14 16 12 C -0.41 -10.20 5.65 36.00 0.20 -10.00 16 13 C -0.53 -15.07 9.13 -34.44 -0.31 -15.39 16 14 H 0.07 1.96 7.71 -52.49 -0.40 1.56 16 15 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 16 N -0.88 -25.26 13.29 55.43 0.74 -24.53 16 17 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.09 0.98 11.50 -16.98 -0.20 0.78 16 22 N -0.30 -3.45 12.33 30.86 0.38 -3.07 16 23 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 28 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.42 5.12 7.74 -34.47 -0.27 4.85 16 30 H 0.10 2.61 7.20 -51.92 -0.37 2.24 16 31 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.19 1.52 7.50 -52.48 -0.39 1.13 16 LS Contribution 310.12 15.07 4.67 4.67 Total: -1.00 -38.10 310.12 -6.66 -44.76 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.53 Total: 1.73 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.98 Total: -15.14 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 1.07 Total: -48.80 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -2.32 Total: -59.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 56.24 SS G_CDS: -0.54 Total: 55.70 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -38.10 -6.66 -44.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.102 kcal (2) G-P(sol) polarization free energy of solvation -38.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds