Wall clock time and date at job start Wed Apr 15 2020 11:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46698 * 2 1 4 4 C 1.34258 * 125.75178 * 125.00444 * 3 2 1 5 5 C 1.38042 * 107.41914 * 180.02562 * 4 3 2 6 6 C 1.47425 * 126.41775 * 179.97438 * 5 4 3 7 7 O 1.21603 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99743 * 179.97438 * 6 5 4 9 9 S 1.65602 * 119.99511 * 179.72170 * 8 6 5 10 10 O 1.42109 * 104.27511 * 181.34842 * 9 8 6 11 11 O 1.42098 * 104.28120 * 309.20840 * 9 8 6 12 12 C 1.81394 * 104.44973 * 65.28308 * 9 8 6 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 9 8 14 14 H 1.07996 * 120.00269 * 359.97438 * 13 12 9 15 15 C 1.37880 * 119.99990 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00199 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47041 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47065 * 120.00371 * 17 15 13 20 20 H 1.48497 * 109.47342 * 240.00263 * 17 15 13 21 21 C 1.41291 * 107.16396 * 0.23821 * 5 4 3 22 22 N 1.30442 * 108.02749 * 359.59410 * 21 5 4 23 23 H 1.09007 * 109.47226 * 299.99666 * 1 2 3 24 24 H 1.08994 * 109.47327 * 60.00096 * 1 2 3 25 25 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47307 * 239.99954 * 2 1 3 27 27 H 1.09004 * 109.47432 * 119.99802 * 2 1 3 28 28 H 1.07999 * 126.29316 * 0.02562 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 31 31 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 32 32 H 0.96996 * 120.00318 * 180.02562 * 16 15 13 33 33 H 1.08008 * 125.98679 * 179.74239 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0704 3.2312 0.5372 6 6 3.9312 4.2039 1.2345 7 8 4.5486 3.8677 2.2268 8 7 4.0339 5.4657 0.7723 9 16 4.9955 6.5602 1.5597 10 8 4.8334 7.7637 0.8216 11 8 4.5865 6.4729 2.9177 12 6 6.6776 5.9119 1.3585 13 6 7.6560 6.8331 2.0404 14 1 7.3014 7.7202 2.5441 15 6 9.0039 6.5435 2.0213 16 7 9.4358 5.4636 1.4075 17 14 10.2167 7.6859 2.8660 18 1 9.4824 8.8221 3.4783 19 1 10.9449 6.9401 3.9237 20 1 11.1870 8.2033 1.8679 21 6 2.2922 3.4757 -0.6165 22 7 1.6762 2.3695 -0.9298 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.3140 1.4022 1.7338 29 1 3.5411 5.7341 -0.0190 30 1 6.7404 4.9196 1.8053 31 1 6.9181 5.8483 0.2972 32 1 10.3840 5.2596 1.3943 33 1 2.2217 4.4137 -1.1474 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:12 Heat of formation + Delta-G solvation = -69.923682 kcal Electronic energy + Delta-G solvation = -20300.823210 eV Core-core repulsion = 16875.328602 eV Total energy + Delta-G solvation = -3425.494609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47589 -40.55121 -38.05205 -37.01221 -35.74480 -35.41083 -35.17018 -31.62837 -31.08064 -30.62784 -25.70967 -25.28460 -24.35765 -21.75771 -21.71163 -20.64724 -19.44685 -19.01356 -18.25011 -17.47589 -17.35609 -16.68724 -16.42451 -16.14503 -15.95581 -15.69701 -15.37382 -14.70651 -14.49214 -14.09915 -13.89352 -13.61477 -13.45702 -13.39810 -13.16641 -13.06130 -12.96412 -12.73913 -12.55584 -12.50668 -12.00716 -11.96045 -11.77691 -11.26528 -11.02629 -10.77788 -10.62608 -9.82534 -8.40751 -6.59663 -0.69809 0.33912 1.01950 1.34802 1.39163 1.40092 1.54639 1.71787 2.14574 2.32242 2.81151 2.93602 3.19872 3.44689 3.69024 3.80668 4.02463 4.08184 4.09256 4.36470 4.38877 4.62329 4.70225 4.80227 4.81748 4.89895 5.22104 5.31747 5.37226 5.70312 5.80460 5.85704 6.45316 6.50096 6.62638 7.11836 8.72523 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.003949 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.642963 B = 7088.985521 C = 7571.000530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.354 5.354 4 C 0.145 3.855 5 C -0.324 4.324 6 C 0.614 3.386 7 O -0.544 6.544 8 N -1.040 6.040 9 S 2.603 3.397 10 O -0.978 6.978 11 O -0.984 6.984 12 C -0.421 4.421 13 C -0.567 4.567 14 H 0.068 0.932 15 C 0.024 3.976 16 N -0.908 5.908 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.264 1.264 21 C 0.091 3.909 22 N -0.312 5.312 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.212 0.788 29 H 0.443 0.557 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.274 0.726 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.912 -12.320 -6.004 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.132 5.132 4 C -0.009 4.009 5 C -0.341 4.341 6 C 0.405 3.595 7 O -0.420 6.420 8 N -0.804 5.804 9 S 2.703 3.297 10 O -0.969 6.969 11 O -0.975 6.975 12 C -0.556 4.556 13 C -0.606 4.606 14 H 0.087 0.913 15 C -0.179 4.179 16 N -0.545 5.545 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.097 4.097 22 N -0.131 5.131 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.148 0.852 28 H 0.228 0.772 29 H 0.282 0.718 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -16.594 -12.656 -5.760 21.650 hybrid contribution 1.452 0.600 0.269 1.594 sum -15.142 -12.056 -5.490 20.119 Atomic orbital electron populations 1.22029 0.92983 1.04363 1.02479 1.22322 0.96764 0.74891 1.06553 1.49058 1.33167 1.11660 1.19267 1.23433 0.90214 0.92934 0.94342 1.20026 1.13143 0.95622 1.05313 1.17585 0.79246 0.80809 0.81908 1.90953 1.46516 1.78328 1.26205 1.54713 1.59142 1.23480 1.43066 1.05324 0.77703 0.73408 0.73218 1.93497 1.86703 1.43679 1.73004 1.93481 1.81516 1.86240 1.36230 1.27667 1.14129 1.07507 1.06324 1.20772 0.92864 1.09080 1.37868 0.91348 1.25886 1.00013 0.96982 0.95030 1.70046 1.16279 1.26164 1.41990 0.85339 0.78185 0.78706 0.78674 1.18504 1.19364 1.18831 1.24560 0.92546 0.98635 0.93957 1.77114 1.24457 0.97362 1.14204 0.92830 0.92559 0.87924 0.87910 0.85200 0.77156 0.71758 0.90190 0.89579 0.91675 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.09 71.98 0.73 -0.65 16 2 C 0.11 1.02 7.21 86.38 0.62 1.64 16 3 N -0.35 -6.30 3.65 -346.29 -1.26 -7.56 16 4 C 0.14 3.02 11.25 84.28 0.95 3.97 16 5 C -0.32 -8.40 6.13 -20.15 -0.12 -8.52 16 6 C 0.61 21.15 7.55 86.66 0.65 21.80 16 7 O -0.54 -23.43 15.00 12.42 0.19 -23.25 16 8 N -1.04 -34.06 5.60 -175.89 -0.98 -35.04 16 9 S 2.60 115.37 5.03 -56.49 -0.28 115.08 16 10 O -0.98 -44.56 18.08 -127.65 -2.31 -46.87 16 11 O -0.98 -50.32 17.03 -120.69 -2.05 -52.37 16 12 C -0.42 -21.85 5.65 71.24 0.40 -21.44 16 13 C -0.57 -32.72 9.13 25.60 0.23 -32.48 16 14 H 0.07 3.85 7.71 -2.91 -0.02 3.83 16 15 C 0.02 1.37 5.46 84.66 0.46 1.83 16 16 N -0.91 -53.02 13.29 21.45 0.28 -52.73 16 17 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 21 C 0.09 1.90 11.50 85.65 0.99 2.89 16 22 N -0.31 -6.67 12.33 -56.27 -0.69 -7.36 16 23 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.13 0.45 8.06 -2.39 -0.02 0.43 16 28 H 0.21 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.44 10.13 7.74 -96.74 -0.75 9.38 16 30 H 0.08 4.41 7.20 -2.39 -0.02 4.39 16 31 H 0.09 4.32 8.14 -2.39 -0.02 4.30 16 32 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.22 2.94 7.50 -2.91 -0.02 2.92 16 Total: -1.00 -82.92 310.12 0.22 -82.70 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.40 Total: 12.82 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.91 Total: -30.97 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -2.66 Total: -102.70 kcal Atomic # 8 Polarization: -118.31 SS G_CDS: -4.18 Total: -122.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 115.37 SS G_CDS: -0.28 Total: 115.08 kcal Total: -82.92 0.22 -82.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.779 kcal (2) G-P(sol) polarization free energy of solvation -82.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds