Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.53713 * 2 1 4 4 C 1.51588 * 110.89452 * 237.18066 * 2 1 3 5 5 O 1.21239 * 127.15503 * 61.57293 * 4 2 1 6 6 N 1.34763 * 105.68385 * 241.64798 * 4 2 1 7 7 N 1.40107 * 124.17460 * 179.97438 * 6 4 2 8 8 C 1.34774 * 120.00005 * 254.72792 * 7 6 4 9 9 O 1.21281 * 120.00138 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99741 * 180.02562 * 8 7 6 11 11 S 1.81005 * 109.47173 * 179.97438 * 10 8 7 12 12 C 1.76189 * 100.00097 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.38805 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00034 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00277 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00228 * 16 14 12 19 19 H 1.48490 * 109.46901 * 150.00205 * 16 14 12 20 20 C 1.33789 * 111.64752 * 359.66283 * 6 4 2 21 21 O 1.21534 * 123.77216 * 180.22977 * 20 6 4 22 22 N 1.34528 * 112.45376 * 0.22423 * 20 6 4 23 23 C 1.46498 * 126.68636 * 180.02562 * 22 20 6 24 24 H 1.08998 * 109.46464 * 297.16642 * 1 2 3 25 25 H 1.09001 * 109.47124 * 57.16587 * 1 2 3 26 26 H 1.09003 * 109.47019 * 177.16529 * 1 2 3 27 27 H 0.97002 * 119.99641 * 74.73504 * 7 6 4 28 28 H 1.09005 * 109.47318 * 59.99759 * 10 8 7 29 29 H 1.09002 * 109.47150 * 299.99724 * 10 8 7 30 30 H 0.97001 * 119.99662 * 179.97438 * 15 14 12 31 31 H 1.08995 * 109.47653 * 359.97438 * 23 22 20 32 32 H 1.09006 * 109.46949 * 119.98079 * 23 22 20 33 33 H 1.09004 * 109.47029 * 239.97157 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0707 -0.7676 -1.1901 5 8 1.9021 -0.5131 -2.3635 6 7 2.7762 -1.7925 -0.6726 7 7 3.4468 -2.7534 -1.4407 8 6 2.9382 -3.9958 -1.5597 9 8 1.8997 -4.2819 -1.0023 10 6 3.6598 -5.0295 -2.3853 11 16 2.7337 -6.5843 -2.3495 12 6 3.7719 -7.5824 -3.3645 13 1 4.6735 -7.1660 -3.7891 14 6 3.4312 -8.9037 -3.6185 15 7 4.2066 -9.6492 -4.3772 16 14 1.8722 -9.6241 -2.8836 17 1 2.1786 -10.2179 -1.5574 18 1 0.8587 -8.5505 -2.7230 19 1 1.3399 -10.6763 -3.7860 20 6 2.7628 -1.7752 0.6651 21 8 3.3324 -2.5960 1.3571 22 7 2.0483 -0.7477 1.1585 23 6 1.8290 -0.4333 2.5725 24 1 -0.3632 0.4692 0.9143 25 1 -0.3633 0.5572 -0.8635 26 1 -0.3633 -1.0264 -0.0508 27 1 4.2773 -2.5245 -1.8867 28 1 4.6566 -5.1913 -1.9749 29 1 3.7430 -4.6794 -3.4142 30 1 3.9686 -10.5728 -4.5544 31 1 2.3402 -1.1701 3.1921 32 1 2.2228 0.5598 2.7892 33 1 0.7608 -0.4555 2.7882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826724911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = -29.586587 kcal Electronic energy + Delta-G solvation = -20466.126328 eV Core-core repulsion = 17042.380867 eV Total energy + Delta-G solvation = -3423.745461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.69076 -39.27643 -38.90817 -36.67069 -35.90372 -32.70349 -32.46215 -31.53124 -29.46977 -27.13469 -25.64758 -25.14909 -22.24460 -22.09629 -20.55709 -18.81889 -18.05633 -17.32257 -16.96136 -16.47583 -16.21386 -15.57719 -15.05603 -15.02558 -14.87001 -14.71083 -14.18521 -13.86950 -13.67583 -13.27381 -12.87451 -12.82528 -12.73776 -12.37865 -12.26896 -11.35250 -11.26357 -11.02671 -10.85330 -10.73496 -10.54777 -9.90220 -9.76688 -9.55009 -9.38188 -9.02601 -8.57192 -6.97381 -6.31304 -4.04412 0.95774 1.30247 2.34522 2.64949 2.78512 2.80515 3.31759 3.36503 3.48675 3.51829 3.77291 4.21795 4.30670 4.36798 4.59188 4.61324 5.00254 5.05920 5.07734 5.10427 5.12908 5.28260 5.45291 5.60724 5.63223 5.88064 6.01829 6.05794 6.70751 7.06348 7.06785 7.74882 7.91621 8.30229 8.39459 9.14312 10.77796 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.031377 B = 0.003854 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.170435 B = 7263.465705 C = 7418.287563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 H 0.132 0.868 4 C 0.525 3.475 5 O -0.454 6.454 6 N -0.376 5.376 7 N -0.511 5.511 8 C 0.538 3.462 9 O -0.494 6.494 10 C -0.113 4.113 11 S -0.131 6.131 12 C -0.524 4.524 13 H 0.091 0.909 14 C 0.098 3.902 15 N -0.878 5.878 16 Si 0.855 3.145 17 H -0.266 1.266 18 H -0.236 1.236 19 H -0.273 1.273 20 C 0.703 3.297 21 O -0.520 6.520 22 N -0.623 5.623 23 C 0.119 3.881 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.426 0.574 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.272 0.728 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 23.924 10.862 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 H 0.149 0.851 4 C 0.312 3.688 5 O -0.320 6.320 6 N -0.209 5.209 7 N -0.265 5.265 8 C 0.325 3.675 9 O -0.363 6.363 10 C -0.265 4.265 11 S 0.095 5.905 12 C -0.671 4.671 13 H 0.109 0.891 14 C -0.111 4.111 15 N -0.514 5.514 16 Si 0.680 3.320 17 H -0.191 1.191 18 H -0.160 1.160 19 H -0.198 1.198 20 C 0.404 3.596 21 O -0.391 6.391 22 N -0.364 5.364 23 C -0.021 4.021 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.269 0.731 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.948 22.912 11.535 26.332 hybrid contribution 1.156 -0.092 -0.722 1.366 sum -4.792 22.821 10.813 25.703 Atomic orbital electron populations 1.21970 0.90162 1.04559 1.04368 1.22088 0.98095 0.97792 0.82428 0.85081 1.21345 0.76800 0.80091 0.90595 1.90834 1.55846 1.68927 1.16418 1.45095 1.47797 1.22802 1.05229 1.45273 1.26008 1.05416 1.49753 1.21004 0.85567 0.80378 0.80575 1.90740 1.22625 1.77975 1.44925 1.23223 1.03703 0.97538 1.02042 1.84882 1.34304 1.03254 1.68104 1.22293 1.11331 0.98626 1.34855 0.89105 1.24684 0.96894 0.95727 0.93822 1.69934 1.37324 1.08295 1.35885 0.86756 0.84301 0.81042 0.79891 1.19101 1.15971 1.19804 1.15803 0.80415 0.82479 0.80865 1.91021 1.47713 1.40268 1.60086 1.47498 1.53649 1.28440 1.06852 1.21570 1.02336 1.02043 0.76187 0.89919 0.89513 0.90967 0.73112 0.87414 0.87403 0.91850 0.88969 0.91196 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.48 37.16 0.35 -0.58 16 2 C 0.10 0.79 4.03 -68.20 -0.27 0.52 16 3 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.53 6.36 7.86 -10.55 -0.08 6.28 16 5 O -0.45 -6.51 18.01 5.59 0.10 -6.41 16 6 N -0.38 -5.35 2.93 -15.79 -0.05 -5.40 16 7 N -0.51 -7.65 6.00 31.22 0.19 -7.46 16 8 C 0.54 10.22 7.90 -10.99 -0.09 10.14 16 9 O -0.49 -11.29 16.07 5.56 0.09 -11.20 16 10 C -0.11 -2.19 6.16 36.01 0.22 -1.97 16 11 S -0.13 -3.34 18.55 -107.50 -1.99 -5.33 16 12 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 13 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 14 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 15 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 16 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.70 10.09 8.23 -88.02 -0.72 9.37 16 21 O -0.52 -9.49 17.34 5.34 0.09 -9.39 16 22 N -0.62 -5.84 3.14 -180.28 -0.57 -6.40 16 23 C 0.12 0.68 11.13 59.85 0.67 1.35 16 24 H 0.08 0.30 8.03 -51.93 -0.42 -0.12 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.43 4.75 8.83 -182.59 -1.61 3.13 16 28 H 0.11 1.90 8.14 -51.91 -0.42 1.48 16 29 H 0.11 1.87 8.14 -51.92 -0.42 1.45 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.28 8.04 -51.93 -0.42 -0.14 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -38.74 312.80 -6.03 -44.78 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.96 Total: -2.47 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 0.29 Total: 13.16 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.35 Total: -44.92 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.28 Total: -27.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -38.74 -6.03 -44.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826724911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.189 kcal (2) G-P(sol) polarization free energy of solvation -38.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds