Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.53713 * 2 1 4 4 C 1.51588 * 110.89452 * 237.18066 * 2 1 3 5 5 O 1.21239 * 127.15503 * 61.57293 * 4 2 1 6 6 N 1.34763 * 105.68385 * 241.64798 * 4 2 1 7 7 N 1.40107 * 124.17460 * 179.97438 * 6 4 2 8 8 C 1.34774 * 120.00005 * 254.72792 * 7 6 4 9 9 O 1.21281 * 120.00138 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99741 * 180.02562 * 8 7 6 11 11 S 1.81005 * 109.47173 * 179.97438 * 10 8 7 12 12 C 1.76189 * 100.00097 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.38805 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00034 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00277 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00228 * 16 14 12 19 19 H 1.48490 * 109.46901 * 150.00205 * 16 14 12 20 20 C 1.33789 * 111.64752 * 359.66283 * 6 4 2 21 21 O 1.21534 * 123.77216 * 180.22977 * 20 6 4 22 22 N 1.34528 * 112.45376 * 0.22423 * 20 6 4 23 23 C 1.46498 * 126.68636 * 180.02562 * 22 20 6 24 24 H 1.08998 * 109.46464 * 297.16642 * 1 2 3 25 25 H 1.09001 * 109.47124 * 57.16587 * 1 2 3 26 26 H 1.09003 * 109.47019 * 177.16529 * 1 2 3 27 27 H 0.97002 * 119.99641 * 74.73504 * 7 6 4 28 28 H 1.09005 * 109.47318 * 59.99759 * 10 8 7 29 29 H 1.09002 * 109.47150 * 299.99724 * 10 8 7 30 30 H 0.97001 * 119.99662 * 179.97438 * 15 14 12 31 31 H 1.08995 * 109.47653 * 359.97438 * 23 22 20 32 32 H 1.09006 * 109.46949 * 119.98079 * 23 22 20 33 33 H 1.09004 * 109.47029 * 239.97157 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0707 -0.7676 -1.1901 5 8 1.9021 -0.5131 -2.3635 6 7 2.7762 -1.7925 -0.6726 7 7 3.4468 -2.7534 -1.4407 8 6 2.9382 -3.9958 -1.5597 9 8 1.8997 -4.2819 -1.0023 10 6 3.6598 -5.0295 -2.3853 11 16 2.7337 -6.5843 -2.3495 12 6 3.7719 -7.5824 -3.3645 13 1 4.6735 -7.1660 -3.7891 14 6 3.4312 -8.9037 -3.6185 15 7 4.2066 -9.6492 -4.3772 16 14 1.8722 -9.6241 -2.8836 17 1 2.1786 -10.2179 -1.5574 18 1 0.8587 -8.5505 -2.7230 19 1 1.3399 -10.6763 -3.7860 20 6 2.7628 -1.7752 0.6651 21 8 3.3324 -2.5960 1.3571 22 7 2.0483 -0.7477 1.1585 23 6 1.8290 -0.4333 2.5725 24 1 -0.3632 0.4692 0.9143 25 1 -0.3633 0.5572 -0.8635 26 1 -0.3633 -1.0264 -0.0508 27 1 4.2773 -2.5245 -1.8867 28 1 4.6566 -5.1913 -1.9749 29 1 3.7430 -4.6794 -3.4142 30 1 3.9686 -10.5728 -4.5544 31 1 2.3402 -1.1701 3.1921 32 1 2.2228 0.5598 2.7892 33 1 0.7608 -0.4555 2.7882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826724911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -60.064028 kcal Electronic energy + Delta-G solvation = -20467.447929 eV Core-core repulsion = 17042.380867 eV Total energy + Delta-G solvation = -3425.067062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.67503 -40.71401 -39.95572 -37.67279 -37.10345 -34.69808 -33.90127 -32.18376 -30.86681 -28.02367 -27.76687 -25.98751 -23.40743 -22.96300 -21.73555 -20.23160 -19.65676 -18.67436 -17.94237 -17.69217 -17.28834 -17.13430 -16.55790 -16.35271 -16.07400 -15.75347 -15.64390 -15.28490 -14.90002 -14.62814 -13.96607 -13.82293 -13.39537 -13.35529 -13.25312 -13.04990 -12.85474 -12.82497 -12.31001 -12.01507 -11.93238 -11.79569 -11.21846 -11.19603 -10.77300 -10.61619 -10.10945 -9.06152 -8.53736 -6.26161 -0.13258 0.35288 0.96307 1.14899 1.29916 1.44135 1.52032 1.69109 1.73380 2.22030 2.34274 2.62769 2.78953 2.84620 3.53827 3.59380 3.82928 4.05920 4.09783 4.33576 4.64355 4.66332 4.69246 4.78061 4.87235 4.93299 5.16250 5.27609 5.68750 5.73551 5.86284 6.06582 6.10308 6.57388 6.91050 7.05381 8.58573 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.031377 B = 0.003854 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.170435 B = 7263.465705 C = 7418.287563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.116 3.884 3 H 0.183 0.817 4 C 0.518 3.482 5 O -0.480 6.480 6 N -0.386 5.386 7 N -0.501 5.501 8 C 0.543 3.457 9 O -0.539 6.539 10 C -0.100 4.100 11 S -0.167 6.167 12 C -0.530 4.530 13 H 0.068 0.932 14 C 0.049 3.951 15 N -0.914 5.914 16 Si 0.911 3.089 17 H -0.263 1.263 18 H -0.238 1.238 19 H -0.256 1.256 20 C 0.690 3.310 21 O -0.572 6.572 22 N -0.607 5.607 23 C 0.109 3.891 24 H 0.119 0.881 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.444 0.556 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.278 0.722 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 26.741 12.033 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 H 0.200 0.800 4 C 0.307 3.693 5 O -0.348 6.348 6 N -0.220 5.220 7 N -0.254 5.254 8 C 0.330 3.670 9 O -0.412 6.412 10 C -0.252 4.252 11 S 0.059 5.941 12 C -0.677 4.677 13 H 0.086 0.914 14 C -0.157 4.157 15 N -0.552 5.552 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.162 1.162 19 H -0.180 1.180 20 C 0.392 3.608 21 O -0.447 6.447 22 N -0.347 5.347 23 C -0.029 4.029 24 H 0.137 0.863 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.290 0.710 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.089 25.811 12.699 29.626 hybrid contribution 1.567 -0.759 -1.064 2.041 sum -5.522 25.052 11.634 28.168 Atomic orbital electron populations 1.22039 0.88527 1.03286 1.06834 1.22450 0.98931 0.98662 0.79022 0.79973 1.22271 0.75865 0.79555 0.91603 1.90822 1.56623 1.69539 1.17859 1.45526 1.48357 1.22514 1.05614 1.44851 1.26374 1.05047 1.49137 1.20749 0.84846 0.81458 0.79969 1.90718 1.24511 1.79117 1.46882 1.23159 1.03431 0.94657 1.03954 1.84812 1.35348 1.06578 1.67382 1.22424 1.11007 0.99356 1.34930 0.91351 1.25500 0.99716 0.96213 0.94223 1.70006 1.39049 1.08981 1.37146 0.85920 0.80819 0.80494 0.79472 1.18755 1.16222 1.18048 1.16160 0.80883 0.83199 0.80575 1.90980 1.50197 1.42480 1.61000 1.47787 1.51616 1.26670 1.08616 1.21957 1.03956 1.03364 0.73635 0.86300 0.88321 0.93957 0.70997 0.85460 0.85089 0.91253 0.90948 0.87343 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.48 71.98 0.68 -0.60 16 2 C 0.12 1.33 4.03 44.38 0.18 1.51 16 3 H 0.18 0.40 8.14 -2.39 -0.02 0.38 16 4 C 0.52 11.63 7.86 87.94 0.69 12.32 16 5 O -0.48 -13.12 18.01 -2.90 -0.05 -13.17 16 6 N -0.39 -10.66 2.93 -441.12 -1.29 -11.96 16 7 N -0.50 -14.75 6.00 -173.53 -1.04 -15.79 16 8 C 0.54 20.61 7.90 87.66 0.69 21.30 16 9 O -0.54 -25.01 16.07 -3.03 -0.05 -25.06 16 10 C -0.10 -3.84 6.16 71.24 0.44 -3.40 16 11 S -0.17 -8.57 18.55 -56.49 -1.05 -9.62 16 12 C -0.53 -30.82 10.04 67.96 0.68 -30.14 16 13 H 0.07 4.15 8.03 -2.91 -0.02 4.13 16 14 C 0.05 2.90 5.50 84.86 0.47 3.37 16 15 N -0.91 -55.67 13.97 21.65 0.30 -55.37 16 16 Si 0.91 45.22 27.74 68.60 1.90 47.13 16 17 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.69 19.28 8.23 179.44 1.48 20.75 16 21 O -0.57 -21.13 17.34 -3.82 -0.07 -21.19 16 22 N -0.61 -9.73 3.14 -842.70 -2.65 -12.38 16 23 C 0.11 0.89 11.13 127.77 1.42 2.31 16 24 H 0.12 0.22 8.03 -2.39 -0.02 0.20 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.44 9.49 8.83 -213.31 -1.88 7.61 16 28 H 0.13 4.41 8.14 -2.39 -0.02 4.39 16 29 H 0.13 4.43 8.14 -2.39 -0.02 4.41 16 30 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 32 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 33 H 0.09 0.36 8.04 -2.38 -0.02 0.34 16 Total: -1.00 -87.77 312.80 1.97 -85.79 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -0.77 Total: 4.19 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 6.73 Total: 27.43 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -4.68 Total: -95.50 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.17 Total: -59.43 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.62 kcal Total: -87.77 1.97 -85.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826724911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.730 kcal (2) G-P(sol) polarization free energy of solvation -87.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds