Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46660 * 2 1 4 4 C 1.35035 * 124.88316 * 125.02448 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.71338 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 S 1.65603 * 120.00013 * 180.27921 * 9 7 6 11 11 O 1.42102 * 104.27456 * 181.07043 * 10 9 7 12 12 O 1.42102 * 104.27443 * 308.92376 * 10 9 7 13 13 C 1.81397 * 104.44859 * 64.99476 * 10 9 7 14 14 C 1.50703 * 109.46754 * 179.97438 * 13 10 9 15 15 H 1.08002 * 120.00082 * 0.02562 * 14 13 10 16 16 C 1.37873 * 119.99863 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00093 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46932 * 120.00036 * 18 16 14 21 21 H 1.48504 * 109.47223 * 239.99963 * 18 16 14 22 22 N 1.28463 * 124.88731 * 304.97814 * 3 2 1 23 23 H 1.09004 * 109.46922 * 299.99164 * 1 2 3 24 24 H 1.08997 * 109.47655 * 59.99750 * 1 2 3 25 25 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46922 * 240.00836 * 2 1 3 27 27 H 1.08997 * 109.47655 * 120.00250 * 2 1 3 28 28 H 1.08008 * 126.38238 * 359.97438 * 4 3 2 29 29 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 30 30 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 31 31 H 1.08990 * 109.47315 * 299.99981 * 13 10 9 32 32 H 1.09003 * 109.47168 * 60.00409 * 13 10 9 33 33 H 0.97007 * 119.99841 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8749 1.8976 0.9071 5 6 3.0877 3.1904 0.5673 6 6 2.3009 3.4122 -0.5878 7 6 2.1870 4.6757 -1.3444 8 8 2.8043 5.6586 -0.9827 9 7 1.4029 4.7374 -2.4389 10 16 1.2806 6.1520 -3.2911 11 8 0.3686 5.8521 -4.3388 12 8 0.9699 7.1285 -2.3066 13 6 2.9461 6.4256 -3.9556 14 6 2.9626 7.6992 -4.7611 15 1 2.0613 8.2856 -4.8627 16 6 4.1284 8.1164 -5.3675 17 7 5.2260 7.4026 -5.2433 18 14 4.1490 9.6954 -6.3653 19 1 2.7965 10.3083 -6.3501 20 1 5.1278 10.6424 -5.7732 21 1 4.5394 9.3912 -7.7655 22 7 1.6935 2.2754 -0.8634 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.3125 1.3750 1.7450 29 1 3.7223 3.9033 1.0726 30 1 0.9105 3.9531 -2.7275 31 1 3.6567 6.5063 -3.1332 32 1 3.2242 5.5880 -4.5953 33 1 6.0462 7.6960 -5.6703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842794574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -33.645852 kcal Electronic energy + Delta-G solvation = -20437.024548 eV Core-core repulsion = 17013.103064 eV Total energy + Delta-G solvation = -3423.921484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.79895 -39.35811 -36.16733 -35.10171 -34.85577 -34.00067 -33.29881 -30.84755 -30.20528 -28.99731 -25.38854 -23.50440 -22.83993 -21.60235 -20.38921 -19.10596 -18.11181 -17.19989 -16.89644 -16.41069 -16.19189 -15.58088 -14.93197 -14.69683 -14.49703 -14.31767 -14.12820 -13.76818 -13.39773 -12.76674 -12.53479 -12.49806 -12.11148 -11.85309 -11.82685 -11.39969 -11.22835 -11.12844 -11.00859 -10.89045 -10.60389 -10.40341 -10.16649 -9.74607 -9.41198 -9.19403 -9.10008 -8.66511 -6.27923 -4.38817 1.09714 1.43410 2.00545 2.22606 3.23113 3.24823 3.31511 3.35148 3.38932 4.00839 4.27000 4.41837 4.47026 4.57878 4.66526 4.71734 4.93216 5.05534 5.16050 5.25708 5.33536 5.39592 5.56427 5.66339 5.69610 6.25406 6.56759 6.66644 6.83712 7.09008 7.47660 7.66329 7.79063 7.92699 8.62523 9.28148 10.83962 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.004127 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.071725 B = 6783.532911 C = 7126.954467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.281 5.281 4 C -0.022 4.022 5 C -0.172 4.172 6 C -0.018 4.018 7 C 0.627 3.373 8 O -0.479 6.479 9 N -1.051 6.051 10 S 2.555 3.445 11 O -0.967 6.967 12 O -0.952 6.952 13 C -0.405 4.405 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.077 3.923 17 N -0.877 5.877 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.278 1.278 22 N -0.253 5.253 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.183 0.817 29 H 0.167 0.833 30 H 0.429 0.571 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 -18.066 11.837 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.071 5.071 4 C -0.164 4.164 5 C -0.200 4.200 6 C -0.180 4.180 7 C 0.411 3.589 8 O -0.348 6.348 9 N -0.810 5.810 10 S 2.657 3.343 11 O -0.958 6.958 12 O -0.942 6.942 13 C -0.542 4.542 14 C -0.573 4.573 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.513 5.513 18 Si 0.733 3.267 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.204 1.204 22 N -0.090 5.090 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.200 0.800 29 H 0.184 0.816 30 H 0.263 0.737 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.545 -17.485 11.282 21.535 hybrid contribution 1.034 0.244 -0.078 1.065 sum -4.512 -17.241 11.205 21.051 Atomic orbital electron populations 1.22094 0.93037 1.03415 1.04157 1.22026 0.96776 0.76676 1.04840 1.45653 1.32371 1.10372 1.18670 1.22880 0.99326 0.95494 0.98708 1.21866 1.03935 0.96237 0.97986 1.21850 1.03203 0.93020 0.99921 1.16714 0.77406 0.86096 0.78723 1.91003 1.42628 1.34789 1.66336 1.55345 1.53810 1.34492 1.37356 1.07119 0.80885 0.72246 0.74052 1.93518 1.63075 1.82846 1.56385 1.93528 1.84577 1.57169 1.58944 1.27620 1.12321 1.06486 1.07768 1.20341 0.97981 1.05640 1.33343 0.91022 1.24928 0.94791 0.97660 0.95605 1.69977 1.00516 1.38308 1.42487 0.86274 0.78906 0.82059 0.79432 1.18947 1.20286 1.20357 1.73423 1.21937 0.98028 1.15621 0.91786 0.90546 0.90227 0.88709 0.87833 0.79984 0.81587 0.73660 0.88223 0.89588 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.02 37.15 0.37 -0.53 16 2 C 0.12 0.61 7.12 -4.04 -0.03 0.59 16 3 N -0.28 -2.76 3.41 -61.33 -0.21 -2.97 16 4 C -0.02 -0.20 11.40 -17.17 -0.20 -0.40 16 5 C -0.17 -2.18 10.81 -39.36 -0.43 -2.61 16 6 C -0.02 -0.29 7.13 -82.76 -0.59 -0.88 16 7 C 0.63 11.93 7.56 -12.39 -0.09 11.84 16 8 O -0.48 -10.68 15.02 -11.83 -0.18 -10.85 16 9 N -1.05 -19.45 5.60 30.50 0.17 -19.28 16 10 S 2.55 58.76 5.03 -107.50 -0.54 58.22 16 11 O -0.97 -23.20 18.08 -57.54 -1.04 -24.24 16 12 O -0.95 -24.70 17.04 -64.79 -1.10 -25.80 16 13 C -0.41 -10.48 5.64 36.01 0.20 -10.28 16 14 C -0.53 -15.33 9.13 -34.44 -0.31 -15.64 16 15 H 0.07 2.01 7.71 -52.49 -0.40 1.60 16 16 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 17 N -0.88 -25.56 13.29 55.43 0.74 -24.83 16 18 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 N -0.25 -3.39 11.36 33.42 0.38 -3.01 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.22 8.04 -51.93 -0.42 -0.20 16 28 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 29 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 30 H 0.43 6.52 8.51 -34.48 -0.29 6.22 16 31 H 0.10 2.68 7.19 -51.93 -0.37 2.31 16 32 H 0.09 2.15 8.14 -51.92 -0.42 1.73 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -37.90 310.48 -6.88 -44.77 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.58 Total: 2.64 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.17 Total: -15.83 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 1.08 Total: -50.09 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -2.32 Total: -60.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.54 Total: 58.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -37.90 -6.88 -44.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842794574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.128 kcal (2) G-P(sol) polarization free energy of solvation -37.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds