Wall clock time and date at job start Wed Apr 15 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46660 * 2 1 4 4 C 1.35035 * 124.88316 * 125.02448 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.71338 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 S 1.65603 * 120.00013 * 180.27921 * 9 7 6 11 11 O 1.42102 * 104.27456 * 181.07043 * 10 9 7 12 12 O 1.42102 * 104.27443 * 308.92376 * 10 9 7 13 13 C 1.81397 * 104.44859 * 64.99476 * 10 9 7 14 14 C 1.50703 * 109.46754 * 179.97438 * 13 10 9 15 15 H 1.08002 * 120.00082 * 0.02562 * 14 13 10 16 16 C 1.37873 * 119.99863 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00093 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46932 * 120.00036 * 18 16 14 21 21 H 1.48504 * 109.47223 * 239.99963 * 18 16 14 22 22 N 1.28463 * 124.88731 * 304.97814 * 3 2 1 23 23 H 1.09004 * 109.46922 * 299.99164 * 1 2 3 24 24 H 1.08997 * 109.47655 * 59.99750 * 1 2 3 25 25 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46922 * 240.00836 * 2 1 3 27 27 H 1.08997 * 109.47655 * 120.00250 * 2 1 3 28 28 H 1.08008 * 126.38238 * 359.97438 * 4 3 2 29 29 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 30 30 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 31 31 H 1.08990 * 109.47315 * 299.99981 * 13 10 9 32 32 H 1.09003 * 109.47168 * 60.00409 * 13 10 9 33 33 H 0.97007 * 119.99841 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8749 1.8976 0.9071 5 6 3.0877 3.1904 0.5673 6 6 2.3009 3.4122 -0.5878 7 6 2.1870 4.6757 -1.3444 8 8 2.8043 5.6586 -0.9827 9 7 1.4029 4.7374 -2.4389 10 16 1.2806 6.1520 -3.2911 11 8 0.3686 5.8521 -4.3388 12 8 0.9699 7.1285 -2.3066 13 6 2.9461 6.4256 -3.9556 14 6 2.9626 7.6992 -4.7611 15 1 2.0613 8.2856 -4.8627 16 6 4.1284 8.1164 -5.3675 17 7 5.2260 7.4026 -5.2433 18 14 4.1490 9.6954 -6.3653 19 1 2.7965 10.3083 -6.3501 20 1 5.1278 10.6424 -5.7732 21 1 4.5394 9.3912 -7.7655 22 7 1.6935 2.2754 -0.8634 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.3125 1.3750 1.7450 29 1 3.7223 3.9033 1.0726 30 1 0.9105 3.9531 -2.7275 31 1 3.6567 6.5063 -3.1332 32 1 3.2242 5.5880 -4.5953 33 1 6.0462 7.6960 -5.6703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842794574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:22 Heat of formation + Delta-G solvation = -64.161597 kcal Electronic energy + Delta-G solvation = -20438.347810 eV Core-core repulsion = 17013.103064 eV Total energy + Delta-G solvation = -3425.244746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.70177 -40.90432 -38.14513 -37.10578 -35.76505 -35.44585 -35.35573 -31.74908 -31.15015 -30.94973 -26.42895 -25.59562 -23.74257 -22.51009 -21.53947 -20.82568 -19.46061 -18.99266 -18.30547 -17.88943 -17.57008 -17.09492 -16.62559 -16.21522 -15.95112 -15.84490 -15.25855 -14.57587 -14.50488 -14.29355 -14.16673 -13.67674 -13.49146 -13.30972 -13.25308 -13.15112 -12.95385 -12.75087 -12.57711 -12.31886 -12.11946 -11.94428 -11.82464 -11.66683 -11.12185 -10.80388 -10.30543 -10.08565 -8.43227 -6.63312 -0.80313 0.20540 1.15143 1.37179 1.39363 1.42842 1.54080 1.65495 2.02294 2.30384 2.70988 2.90191 3.02780 3.28829 3.61416 3.92775 3.98048 4.08031 4.22704 4.40341 4.61132 4.69594 4.72606 4.73897 4.83266 4.90412 5.24403 5.28009 5.31246 5.60043 5.67255 5.89061 6.32069 6.46476 6.85781 7.08588 8.70275 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.004127 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.071725 B = 6783.532911 C = 7126.954467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.269 5.269 4 C 0.008 3.992 5 C -0.198 4.198 6 C -0.057 4.057 7 C 0.623 3.377 8 O -0.521 6.521 9 N -1.038 6.038 10 S 2.598 3.402 11 O -0.976 6.976 12 O -0.981 6.981 13 C -0.418 4.418 14 C -0.569 4.569 15 H 0.070 0.930 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.262 1.262 22 N -0.265 5.265 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.237 0.763 29 H 0.167 0.833 30 H 0.444 0.556 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -20.238 12.749 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.060 5.060 4 C -0.134 4.134 5 C -0.226 4.226 6 C -0.216 4.216 7 C 0.410 3.590 8 O -0.393 6.393 9 N -0.801 5.801 10 S 2.698 3.302 11 O -0.966 6.966 12 O -0.971 6.971 13 C -0.553 4.553 14 C -0.608 4.608 15 H 0.088 0.912 16 C -0.179 4.179 17 N -0.545 5.545 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.187 1.187 22 N -0.104 5.104 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.166 0.834 28 H 0.253 0.747 29 H 0.184 0.816 30 H 0.283 0.717 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.669 -19.686 12.169 23.827 hybrid contribution 1.037 0.677 -0.256 1.265 sum -4.632 -19.008 11.913 22.906 Atomic orbital electron populations 1.22093 0.93230 1.04699 1.02560 1.22580 0.96678 0.74318 1.07643 1.46240 1.31144 1.11185 1.17381 1.23574 0.97177 0.94022 0.98645 1.22107 1.04527 0.98314 0.97662 1.21446 1.06282 0.92360 1.01488 1.17284 0.76199 0.87171 0.78320 1.90967 1.44263 1.36673 1.67362 1.54849 1.54225 1.33919 1.37112 1.05564 0.78896 0.72387 0.73333 1.93495 1.62593 1.83340 1.57211 1.93484 1.84446 1.59397 1.59819 1.27646 1.14727 1.05853 1.07113 1.20770 0.98544 1.07003 1.34502 0.91182 1.25928 0.94240 1.01232 0.96517 1.70060 1.01192 1.40020 1.43183 0.85293 0.79267 0.77677 0.78371 1.18455 1.19223 1.18673 1.73358 1.22116 0.97989 1.16911 0.92450 0.93060 0.87530 0.87590 0.83389 0.74672 0.81585 0.71746 0.90123 0.89580 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.02 71.98 0.72 -0.60 16 2 C 0.11 0.67 7.12 86.38 0.61 1.29 16 3 N -0.27 -4.47 3.41 -347.94 -1.19 -5.65 16 4 C 0.01 0.12 11.40 83.54 0.95 1.08 16 5 C -0.20 -4.83 10.81 22.41 0.24 -4.58 16 6 C -0.06 -1.78 7.13 42.46 0.30 -1.48 16 7 C 0.62 24.69 7.56 86.75 0.66 25.35 16 8 O -0.52 -24.53 15.02 12.43 0.19 -24.34 16 9 N -1.04 -39.61 5.60 -175.69 -0.98 -40.59 16 10 S 2.60 123.23 5.03 -56.49 -0.28 122.94 16 11 O -0.98 -47.31 18.08 -127.65 -2.31 -49.62 16 12 O -0.98 -52.56 17.04 -120.72 -2.06 -54.62 16 13 C -0.42 -22.62 5.64 71.24 0.40 -22.22 16 14 C -0.57 -33.67 9.13 25.60 0.23 -33.43 16 15 H 0.07 4.03 7.71 -2.91 -0.02 4.01 16 16 C 0.02 1.39 5.46 84.65 0.46 1.86 16 17 N -0.91 -53.95 13.29 21.45 0.28 -53.67 16 18 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 22 N -0.26 -6.80 11.36 -48.17 -0.55 -7.35 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 25 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 26 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.15 -0.28 8.04 -2.39 -0.02 -0.30 16 28 H 0.24 0.75 8.06 -2.91 -0.02 0.73 16 29 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.44 13.75 8.51 -96.74 -0.82 12.92 16 31 H 0.08 4.62 7.19 -2.40 -0.02 4.60 16 32 H 0.09 4.52 8.14 -2.39 -0.02 4.50 16 33 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -85.20 310.48 0.04 -85.16 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.32 Total: 14.28 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.59 Total: -32.74 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -2.43 Total: -107.26 kcal Atomic # 8 Polarization: -124.40 SS G_CDS: -4.18 Total: -128.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 123.23 SS G_CDS: -0.28 Total: 122.94 kcal Total: -85.20 0.04 -85.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842794574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.997 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds