Wall clock time and date at job start Wed Apr 15 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39775 * 126.09217 * 2 1 4 4 N 1.30842 * 108.32012 * 179.69469 * 3 2 1 5 5 N 1.40062 * 108.38889 * 0.43612 * 4 3 2 6 6 C 1.46501 * 126.04232 * 179.81502 * 5 4 3 7 7 C 1.54032 * 113.81395 * 53.41652 * 6 5 4 8 8 O 1.44446 * 85.42371 * 223.23484 * 7 6 5 9 9 C 1.44177 * 93.38202 * 24.08826 * 8 7 6 10 10 C 1.35254 * 107.91406 * 359.56072 * 5 4 3 11 11 N 1.39214 * 126.21707 * 180.24331 * 10 5 4 12 12 S 1.65594 * 120.00202 * 63.49048 * 11 10 5 13 13 O 1.42098 * 106.40205 * 179.71739 * 12 11 10 14 14 O 1.42104 * 106.40200 * 312.63423 * 12 11 10 15 15 C 1.76199 * 107.22166 * 66.17471 * 12 11 10 16 16 H 1.08000 * 119.99909 * 359.97438 * 15 12 11 17 17 C 1.37873 * 120.00104 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00058 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00041 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46964 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47371 * 120.00174 * 19 17 15 22 22 H 1.48499 * 109.46968 * 240.00272 * 19 17 15 23 23 H 1.09000 * 109.47268 * 274.08105 * 1 2 3 24 24 H 1.09007 * 109.47176 * 34.07409 * 1 2 3 25 25 H 1.09002 * 109.47186 * 154.07614 * 1 2 3 26 26 H 1.07999 * 125.84060 * 359.94139 * 3 2 1 27 27 H 1.09005 * 113.00104 * 185.24587 * 6 5 4 28 28 H 1.08987 * 113.86661 * 337.33902 * 7 6 5 29 29 H 1.09003 * 113.86379 * 109.05207 * 7 6 5 30 30 H 1.08995 * 113.87082 * 221.76502 * 9 8 7 31 31 H 1.09002 * 113.86027 * 90.05565 * 9 8 7 32 32 H 0.96993 * 119.99429 * 243.48357 * 11 10 5 33 33 H 0.97008 * 120.00159 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3304 1.1295 0.0000 4 7 3.5764 0.7301 0.0066 5 7 3.5915 -0.6704 0.0010 6 6 4.7853 -1.5196 0.0016 7 6 5.7751 -1.2003 1.1378 8 8 6.7989 -1.3370 0.1281 9 6 5.8935 -1.0355 -0.9526 10 6 2.3091 -1.1003 0.0006 11 7 1.8862 -2.4267 0.0004 12 16 2.2441 -3.4100 1.2838 13 8 1.6768 -4.6787 0.9877 14 8 3.6251 -3.2217 1.5607 15 6 1.3674 -2.7864 2.6792 16 1 0.7431 -1.9110 2.5776 17 6 1.4783 -3.4161 3.9007 18 7 2.2388 -4.4818 4.0246 19 14 0.5482 -2.7554 5.3799 20 1 -0.2312 -1.5565 4.9794 21 1 -0.3770 -3.7992 5.8896 22 1 1.5130 -2.3856 6.4465 23 1 -0.3634 0.0731 1.0250 24 1 -0.3634 0.8513 -0.5758 25 1 -0.3634 -0.9243 -0.4493 26 1 1.9955 2.1562 -0.0009 27 1 4.5536 -2.5803 -0.0953 28 1 5.6795 -0.1898 1.5349 29 1 5.8155 -1.9636 1.9149 30 1 6.0275 -1.6682 -1.8299 31 1 5.8341 0.0256 -1.1951 32 1 1.3818 -2.7747 -0.7514 33 1 2.3172 -4.9246 4.8842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:29 Heat of formation + Delta-G solvation = -19.538028 kcal Electronic energy + Delta-G solvation = -21883.302927 eV Core-core repulsion = 18459.993204 eV Total energy + Delta-G solvation = -3423.309723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21132 -39.57497 -35.60332 -34.61073 -34.31367 -33.22628 -32.83587 -30.11591 -28.01915 -26.29471 -26.27685 -25.35424 -22.24866 -20.27856 -19.46757 -19.08082 -18.12717 -17.30547 -16.67136 -16.02032 -15.63581 -15.55604 -15.01045 -14.33116 -14.12158 -13.91419 -13.63651 -13.08855 -12.84040 -12.64817 -12.35837 -12.14025 -11.88582 -11.46535 -11.31997 -11.21643 -11.14403 -10.98744 -10.66803 -10.61174 -10.56482 -10.40263 -9.86134 -9.39738 -9.34836 -9.04818 -8.71441 -7.84516 -6.84657 -5.46864 1.74546 2.20980 2.71533 2.98743 3.06178 3.08341 3.15346 3.83005 3.94623 4.40097 4.51456 4.60006 4.83460 5.27085 5.36788 5.41754 5.48126 5.57096 5.64013 5.80676 5.87208 6.03509 6.10840 6.18059 6.29267 6.29941 6.40003 6.41676 6.52468 6.97565 7.14433 7.21983 7.62689 7.85523 8.02340 8.75869 10.09793 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.007976 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.930318 B = 3509.657779 C = 4111.504035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.243 4.243 3 C 0.055 3.945 4 N -0.289 5.289 5 N -0.359 5.359 6 C 0.101 3.899 7 C 0.047 3.953 8 O -0.379 6.379 9 C 0.029 3.971 10 C 0.330 3.670 11 N -1.055 6.055 12 S 2.698 3.302 13 O -0.991 6.991 14 O -0.994 6.994 15 C -1.008 5.008 16 H 0.107 0.893 17 C 0.134 3.866 18 N -0.844 5.844 19 Si 0.922 3.078 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.270 1.270 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.182 0.818 27 H 0.147 0.853 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.419 0.581 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 8.090 -7.191 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.258 4.258 3 C -0.130 4.130 4 N -0.112 5.112 5 N -0.147 5.147 6 C -0.001 4.001 7 C -0.030 4.030 8 O -0.297 6.297 9 C -0.049 4.049 10 C 0.108 3.892 11 N -0.806 5.806 12 S 2.799 3.201 13 O -0.981 6.981 14 O -0.983 6.983 15 C -1.142 5.142 16 H 0.125 0.875 17 C -0.084 4.084 18 N -0.474 5.474 19 Si 0.746 3.254 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.195 1.195 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.199 0.801 27 H 0.165 0.835 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.255 0.745 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.508 7.380 -7.007 10.288 hybrid contribution -2.125 0.202 0.785 2.274 sum -0.617 7.582 -6.221 9.827 Atomic orbital electron populations 1.20004 0.89216 1.01564 1.01823 1.19819 0.96876 0.91039 1.18104 1.23503 0.89885 0.99359 1.00294 1.77244 1.20949 0.87441 1.25543 1.49033 1.04534 1.04641 1.56468 1.25224 0.81599 0.96353 0.96971 1.24447 0.82483 1.02859 0.93178 1.89714 1.31572 1.90667 1.17749 1.24473 0.86234 1.01700 0.92452 1.17186 0.84661 0.85613 1.01771 1.53545 1.70332 1.18265 1.38458 1.01154 0.74459 0.71712 0.72729 1.93416 1.79870 1.39891 1.84970 1.93334 1.35075 1.85884 1.84056 1.30332 1.45756 1.26109 1.12052 0.87462 1.24736 0.91994 0.92109 0.99576 1.69882 1.32735 1.16518 1.28224 0.86091 0.79699 0.79811 0.79828 1.18388 1.19496 1.19540 0.91805 0.92274 0.92216 0.80074 0.83535 0.89613 0.86541 0.88878 0.89085 0.74489 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.32 36.01 0.37 -0.55 16 2 C -0.24 -3.96 6.13 -104.79 -0.64 -4.60 16 3 C 0.05 0.82 11.95 -17.40 -0.21 0.62 16 4 N -0.29 -4.96 12.11 30.61 0.37 -4.59 16 5 N -0.36 -6.63 3.70 -60.41 -0.22 -6.85 16 6 C 0.10 1.85 3.31 -66.85 -0.22 1.63 16 7 C 0.05 0.88 8.65 37.64 0.33 1.20 16 8 O -0.38 -6.74 12.46 -35.23 -0.44 -7.18 16 9 C 0.03 0.45 8.92 37.64 0.34 0.78 16 10 C 0.33 6.12 6.99 -153.40 -1.07 5.04 16 11 N -1.05 -19.93 5.55 31.11 0.17 -19.76 16 12 S 2.70 65.92 4.95 -107.50 -0.53 65.38 16 13 O -0.99 -27.04 18.02 -57.17 -1.03 -28.07 16 14 O -0.99 -25.25 12.96 -57.17 -0.74 -25.99 16 15 C -1.01 -26.36 9.70 30.60 0.30 -26.06 16 16 H 0.11 2.64 7.81 -52.49 -0.41 2.23 16 17 C 0.13 3.58 5.46 -17.82 -0.10 3.48 16 18 N -0.84 -23.55 13.19 55.43 0.73 -22.82 16 19 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.15 2.84 5.86 -51.93 -0.30 2.54 16 28 H 0.09 1.53 8.14 -51.94 -0.42 1.10 16 29 H 0.12 2.31 7.66 -51.93 -0.40 1.91 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.32 7.85 -51.93 -0.41 0.92 16 32 H 0.42 6.54 8.95 -34.47 -0.31 6.24 16 33 H 0.29 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -32.57 300.41 -6.59 -39.17 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.50 Total: 9.70 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.91 Total: -18.46 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 1.05 Total: -54.02 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -2.21 Total: -61.24 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 65.92 SS G_CDS: -0.53 Total: 65.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.57 -6.59 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.629 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds