Wall clock time and date at job start Wed Apr 15 2020 11:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29947 * 126.28980 * 2 1 4 4 O 1.21293 * 110.25357 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81329 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.54982 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.32269 * 195.75913 * 6 5 4 8 8 C 1.54913 * 110.36818 * 73.52429 * 6 5 4 9 9 C 1.55152 * 101.58038 * 204.14745 * 8 6 5 10 10 C 1.54325 * 102.94307 * 35.50343 * 9 8 6 11 11 N 1.47014 * 107.27025 * 337.80669 * 10 9 8 12 12 S 1.65606 * 125.64800 * 178.98090 * 11 10 9 13 13 O 1.42101 * 106.40181 * 23.49193 * 12 11 10 14 14 O 1.42097 * 106.40209 * 156.41408 * 12 11 10 15 15 C 1.76206 * 107.21393 * 269.95330 * 12 11 10 16 16 H 1.08001 * 120.00092 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99998 * 179.97438 * 15 12 11 18 18 N 1.31522 * 119.99866 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00166 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47058 * 89.99916 * 19 17 15 21 21 H 1.48504 * 109.46994 * 210.00246 * 19 17 15 22 22 H 1.48505 * 109.46999 * 329.99695 * 19 17 15 23 23 N 1.31131 * 106.89535 * 0.02562 * 5 4 3 24 24 H 1.09001 * 109.47343 * 270.00060 * 1 2 3 25 25 H 1.09000 * 109.47482 * 30.00453 * 1 2 3 26 26 H 1.09009 * 109.47369 * 149.99898 * 1 2 3 27 27 H 1.09000 * 111.00010 * 322.22750 * 8 6 5 28 28 H 1.09007 * 111.00009 * 86.03750 * 8 6 5 29 29 H 1.09008 * 110.71765 * 153.86404 * 9 8 6 30 30 H 1.08998 * 110.72160 * 276.95811 * 9 8 6 31 31 H 1.09005 * 109.88085 * 97.22170 * 10 9 8 32 32 H 1.09001 * 109.88045 * 218.38271 * 10 9 8 33 33 H 0.96999 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4369 -0.0003 7 1 4.5827 -2.4691 -0.2777 8 6 5.4733 -1.3823 1.3923 9 6 6.9511 -1.6890 1.0331 10 6 7.1248 -0.9974 -0.3356 11 7 5.7853 -0.8497 -0.9231 12 16 5.4434 -0.1419 -2.3807 13 8 6.6323 -0.2228 -3.1548 14 8 4.2001 -0.6818 -2.8071 15 6 5.1638 1.5709 -2.0759 16 1 5.2346 1.9591 -1.0705 17 6 4.8555 2.4158 -3.1209 18 7 4.7697 1.9431 -4.3453 19 14 4.5597 4.2317 -2.7979 20 1 5.8438 4.9694 -2.9068 21 1 3.5978 4.7620 -3.7973 22 1 4.0022 4.4073 -1.4327 23 7 2.3029 -1.0841 -0.0002 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 5.3763 -0.3910 1.8351 28 1 5.0652 -2.1455 2.0550 29 1 7.6255 -1.2562 1.7722 30 1 7.1124 -2.7636 0.9484 31 1 7.5804 -0.0164 -0.2000 32 1 7.7488 -1.6116 -0.9847 33 1 4.5524 2.5374 -5.0805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:31 Heat of formation + Delta-G solvation = -14.573889 kcal Electronic energy + Delta-G solvation = -22194.814652 eV Core-core repulsion = 18771.720190 eV Total energy + Delta-G solvation = -3423.094461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.99097 -38.36342 -35.51127 -35.36132 -34.04709 -33.08163 -32.67308 -30.53816 -29.22548 -28.38295 -26.11303 -23.56057 -22.79930 -21.32239 -20.70033 -18.79735 -17.79358 -17.43477 -16.79573 -16.19592 -16.01618 -15.02514 -14.42868 -13.98511 -13.89625 -13.68303 -13.37818 -13.28751 -13.07906 -12.60281 -12.41420 -11.98788 -11.80847 -11.75113 -11.23241 -11.18041 -11.13666 -10.91835 -10.70419 -10.59456 -10.49254 -10.47677 -10.37250 -10.28174 -9.38694 -9.21756 -8.99926 -8.39701 -6.68902 -5.29677 1.65733 2.08577 2.71104 3.09616 3.15734 3.25694 3.26284 3.92897 4.11892 4.39241 4.55046 4.58483 4.71219 4.92451 5.01585 5.31613 5.44848 5.54209 5.57719 5.71280 5.75691 5.78189 5.84500 5.89325 6.00947 6.08511 6.17622 6.30740 6.31361 6.45936 6.66678 7.26252 7.35436 8.02503 8.71046 8.92143 10.25046 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.010770 C = 0.007326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.163786 B = 2599.282613 C = 3820.922065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.153 3.847 3 N -0.376 5.376 4 O 0.114 5.886 5 C 0.168 3.832 6 C 0.252 3.748 7 H 0.116 0.884 8 C -0.124 4.124 9 C -0.126 4.126 10 C 0.121 3.879 11 N -1.017 6.017 12 S 2.711 3.289 13 O -0.995 6.995 14 O -0.994 6.994 15 C -1.007 5.007 16 H 0.108 0.892 17 C 0.137 3.863 18 N -0.848 5.848 19 Si 0.917 3.083 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.258 1.258 23 N -0.471 5.471 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -5.032 12.519 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 N -0.080 5.080 4 O 0.052 5.948 5 C -0.054 4.054 6 C 0.142 3.858 7 H 0.133 0.867 8 C -0.164 4.164 9 C -0.164 4.164 10 C -0.005 4.005 11 N -0.852 5.852 12 S 2.813 3.187 13 O -0.985 6.985 14 O -0.985 6.985 15 C -1.141 5.141 16 H 0.126 0.874 17 C -0.081 4.081 18 N -0.478 5.478 19 Si 0.740 3.260 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.182 1.182 23 N -0.206 5.206 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.333 -4.953 11.394 12.496 hybrid contribution -0.127 1.486 0.207 1.506 sum -1.460 -3.467 11.602 12.196 Atomic orbital electron populations 1.20034 0.83486 1.04495 1.03453 1.25727 1.00295 0.83770 1.02146 1.74544 0.89653 1.24024 1.19808 1.85428 1.21756 1.23669 1.63905 1.28762 0.96824 0.82941 0.96901 1.19880 0.80161 0.93976 0.91774 0.86683 1.22905 0.95535 1.03620 0.94296 1.22638 0.95742 1.01304 0.96755 1.21626 0.84066 1.00987 0.93775 1.59576 1.11633 1.75901 1.38094 1.00729 0.72945 0.75911 0.69072 1.93367 1.50248 1.88975 1.65929 1.93394 1.45130 1.81614 1.78332 1.30481 1.63294 1.17788 1.02574 0.87394 1.24699 0.88831 1.01398 0.93156 1.69899 1.39340 1.38487 1.00090 0.86205 0.78870 0.81252 0.79643 1.19140 1.20132 1.18169 1.71669 0.99368 1.29633 1.19884 0.89929 0.89793 0.89326 0.89823 0.89284 0.89772 0.90349 0.91142 0.91047 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.51 36.00 0.38 -0.40 16 2 C 0.15 2.98 8.22 -156.37 -1.28 1.70 16 3 N -0.38 -8.22 12.16 30.90 0.38 -7.85 16 4 O 0.11 2.54 8.82 18.10 0.16 2.70 16 5 C 0.17 3.39 5.71 -13.06 -0.07 3.32 16 6 C 0.25 4.28 3.62 -67.57 -0.24 4.03 16 7 H 0.12 1.78 8.14 -51.93 -0.42 1.35 16 8 C -0.12 -1.46 6.49 -24.58 -0.16 -1.62 16 9 C -0.13 -1.31 6.95 -24.90 -0.17 -1.48 16 10 C 0.12 1.85 6.99 -3.07 -0.02 1.83 16 11 N -1.02 -20.34 3.58 -105.66 -0.38 -20.72 16 12 S 2.71 73.21 4.58 -107.50 -0.49 72.72 16 13 O -0.99 -29.28 17.60 -57.17 -1.01 -30.28 16 14 O -0.99 -29.59 16.64 -57.17 -0.95 -30.54 16 15 C -1.01 -28.00 8.19 30.60 0.25 -27.75 16 16 H 0.11 2.79 7.11 -52.49 -0.37 2.42 16 17 C 0.14 3.90 5.46 -17.82 -0.10 3.80 16 18 N -0.85 -25.41 13.19 55.43 0.73 -24.68 16 19 Si 0.92 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 23 N -0.47 -9.47 11.55 -9.87 -0.11 -9.58 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 27 H 0.08 0.99 8.05 -51.93 -0.42 0.58 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.29 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 297.86 15.07 4.49 4.49 Total: -1.00 -37.58 297.86 -7.37 -44.95 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.73 Total: -1.07 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.43 Total: -16.57 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.61 Total: -62.82 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -1.80 Total: -58.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 73.21 SS G_CDS: -0.49 Total: 72.72 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -37.58 -7.37 -44.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.372 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds