Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99733 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47341 * 299.99360 * 3 2 1 6 6 H 1.48493 * 109.47644 * 59.99467 * 3 2 1 7 7 C 1.38794 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00208 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.81008 * 100.00018 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46849 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00301 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99581 * 179.97438 * 11 10 9 14 14 C 1.39882 * 119.99671 * 185.27548 * 13 11 10 15 15 C 1.39999 * 119.66021 * 33.86085 * 14 13 11 16 16 C 1.35912 * 120.92271 * 180.30510 * 15 14 13 17 17 C 1.40598 * 119.89882 * 359.68063 * 16 15 14 18 18 C 1.40536 * 121.13827 * 180.02562 * 17 16 15 19 19 C 1.36105 * 119.69044 * 180.02562 * 18 17 16 20 20 C 1.39370 * 120.99815 * 359.94862 * 19 18 17 21 21 C 1.36088 * 120.97200 * 0.02972 * 20 19 18 22 22 C 1.40598 * 119.65761 * 359.97438 * 21 20 19 23 23 C 1.37696 * 119.65622 * 213.53956 * 14 13 11 24 24 H 0.97000 * 120.00221 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46722 * 60.00293 * 10 9 7 26 26 H 1.09000 * 109.46658 * 299.99772 * 10 9 7 27 27 H 0.97001 * 120.00453 * 5.27642 * 13 11 10 28 28 H 1.08001 * 119.53780 * 359.97438 * 15 14 13 29 29 H 1.08003 * 120.05049 * 179.70162 * 16 15 14 30 30 H 1.07996 * 120.15467 * 0.02562 * 18 17 16 31 31 H 1.07999 * 119.49997 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.51627 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.17351 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.24944 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8444 -6.3430 0.0022 14 6 2.3579 -7.6497 -0.1096 15 6 1.2211 -7.9016 -0.8869 16 6 0.7229 -9.1603 -1.0082 17 6 1.3560 -10.2309 -0.3526 18 6 0.8634 -11.5427 -0.4606 19 6 1.4992 -12.5570 0.1871 20 6 2.6353 -12.3160 0.9576 21 6 3.1414 -11.0592 1.0851 22 6 2.5116 -9.9859 0.4307 23 6 3.0060 -8.6759 0.5407 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7309 0.8925 26 1 3.1252 -3.7316 -0.8875 27 1 3.7984 -6.1856 0.0801 28 1 0.7301 -7.0835 -1.3929 29 1 -0.1578 -9.3379 -1.6077 30 1 -0.0154 -11.7450 -1.0547 31 1 1.1178 -13.5638 0.1023 32 1 3.1211 -13.1387 1.4610 33 1 4.0227 -10.8872 1.6851 34 1 3.8852 -8.4744 1.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003184321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = 5.872847 kcal Electronic energy + Delta-G solvation = -18481.275512 eV Core-core repulsion = 15469.916951 eV Total energy + Delta-G solvation = -3011.358561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71814 -39.40151 -36.57805 -34.20867 -32.60232 -32.48131 -30.36550 -29.48208 -28.07551 -25.54658 -23.51974 -23.06910 -22.08749 -20.56791 -18.23126 -17.88863 -17.10829 -16.89800 -16.10063 -15.30876 -14.96972 -14.85154 -14.72160 -14.22957 -13.78826 -13.65948 -13.46796 -13.39122 -13.15420 -12.66281 -12.30600 -12.11164 -11.61330 -11.35893 -11.10647 -11.07807 -10.96294 -10.80779 -10.27107 -9.87888 -9.73514 -9.54794 -9.12396 -8.32977 -8.32134 -7.74643 -6.57540 -6.27146 -3.98727 0.43839 0.93361 1.95155 2.66532 2.86098 3.12884 3.18603 3.24202 3.28631 3.56149 4.06018 4.14548 4.49958 4.72655 4.83078 4.85507 5.02083 5.07004 5.08491 5.21721 5.26555 5.31742 5.54273 5.61159 5.75065 5.77742 5.87595 6.01525 6.04650 6.14947 6.29346 6.37656 6.44738 6.54611 6.77132 6.99757 7.43896 7.54986 8.29985 8.33894 9.18482 10.80344 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.056292 B = 0.002769 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.282960 B =10110.209222 C =10469.201589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.494 6.494 13 N -0.682 5.682 14 C 0.174 3.826 15 C -0.111 4.111 16 C -0.090 4.090 17 C -0.069 4.069 18 C -0.097 4.097 19 C -0.131 4.131 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.028 4.028 23 C -0.156 4.156 24 H 0.269 0.731 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.410 0.590 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -22.087 -0.288 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.366 6.366 13 N -0.329 5.329 14 C 0.079 3.921 15 C -0.131 4.131 16 C -0.108 4.108 17 C -0.069 4.069 18 C -0.115 4.115 19 C -0.149 4.149 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.029 4.029 23 C -0.177 4.177 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.246 0.754 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.301 -22.197 -0.306 22.824 hybrid contribution 2.451 1.401 0.114 2.825 sum 7.752 -20.797 -0.192 22.195 Atomic orbital electron populations 1.70020 1.05968 1.27468 1.46756 1.25002 0.95050 0.99107 0.94443 0.86094 0.79562 0.81762 0.77946 1.19595 1.20521 1.20529 1.22891 0.94955 0.91471 1.59102 0.90768 1.85428 1.04474 0.96413 1.96758 1.23553 1.07003 0.94544 1.05386 1.20562 0.86506 0.86304 0.74709 1.90724 1.15201 1.85266 1.45397 1.43772 1.11051 1.03932 1.74109 1.17780 0.95198 0.84085 0.95027 1.20997 0.96090 0.97887 0.98077 1.20918 0.99361 0.91575 0.98970 1.18108 0.95764 0.94022 0.99047 1.21024 0.99515 0.91758 0.99216 1.20782 0.96490 0.99134 0.98469 1.20801 0.96615 0.96907 0.99092 1.20966 0.99927 0.92263 0.99822 1.17793 0.94794 0.93119 0.97201 1.20878 1.03010 0.91508 1.02302 0.92154 0.88790 0.88679 0.75363 0.84204 0.85146 0.85707 0.86266 0.86247 0.85772 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.74 16 11 C 0.53 9.58 7.57 -10.99 -0.08 9.49 16 12 O -0.49 -10.72 13.55 5.56 0.08 -10.64 16 13 N -0.68 -9.28 5.32 -9.88 -0.05 -9.34 16 14 C 0.17 2.42 6.25 -83.72 -0.52 1.90 16 15 C -0.11 -1.62 8.55 -39.76 -0.34 -1.96 16 16 C -0.09 -1.13 9.75 -39.53 -0.39 -1.51 16 17 C -0.07 -0.84 5.74 -106.80 -0.61 -1.45 16 18 C -0.10 -0.97 9.76 -39.48 -0.39 -1.36 16 19 C -0.13 -1.16 9.95 -39.93 -0.40 -1.56 16 20 C -0.12 -1.02 9.95 -39.93 -0.40 -1.42 16 21 C -0.11 -1.10 9.77 -39.46 -0.39 -1.48 16 22 C -0.03 -0.34 5.74 -106.84 -0.61 -0.95 16 23 C -0.16 -1.85 9.70 -38.95 -0.38 -2.23 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 26 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.41 4.09 8.81 -40.82 -0.36 3.73 16 28 H 0.14 2.28 6.40 -52.49 -0.34 1.94 16 29 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -33.69 313.38 -9.46 -43.15 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.62 Total: 2.77 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -4.08 Total: -17.96 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.68 Total: -34.39 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.69 -9.46 -43.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003184321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.021 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds