Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99733 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47341 * 299.99360 * 3 2 1 6 6 H 1.48493 * 109.47644 * 59.99467 * 3 2 1 7 7 C 1.38794 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00208 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.81008 * 100.00018 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46849 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00301 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99581 * 179.97438 * 11 10 9 14 14 C 1.39882 * 119.99671 * 185.27548 * 13 11 10 15 15 C 1.39999 * 119.66021 * 33.86085 * 14 13 11 16 16 C 1.35912 * 120.92271 * 180.30510 * 15 14 13 17 17 C 1.40598 * 119.89882 * 359.68063 * 16 15 14 18 18 C 1.40536 * 121.13827 * 180.02562 * 17 16 15 19 19 C 1.36105 * 119.69044 * 180.02562 * 18 17 16 20 20 C 1.39370 * 120.99815 * 359.94862 * 19 18 17 21 21 C 1.36088 * 120.97200 * 0.02972 * 20 19 18 22 22 C 1.40598 * 119.65761 * 359.97438 * 21 20 19 23 23 C 1.37696 * 119.65622 * 213.53956 * 14 13 11 24 24 H 0.97000 * 120.00221 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46722 * 60.00293 * 10 9 7 26 26 H 1.09000 * 109.46658 * 299.99772 * 10 9 7 27 27 H 0.97001 * 120.00453 * 5.27642 * 13 11 10 28 28 H 1.08001 * 119.53780 * 359.97438 * 15 14 13 29 29 H 1.08003 * 120.05049 * 179.70162 * 16 15 14 30 30 H 1.07996 * 120.15467 * 0.02562 * 18 17 16 31 31 H 1.07999 * 119.49997 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.51627 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.17351 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.24944 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8444 -6.3430 0.0022 14 6 2.3579 -7.6497 -0.1096 15 6 1.2211 -7.9016 -0.8869 16 6 0.7229 -9.1603 -1.0082 17 6 1.3560 -10.2309 -0.3526 18 6 0.8634 -11.5427 -0.4606 19 6 1.4992 -12.5570 0.1871 20 6 2.6353 -12.3160 0.9576 21 6 3.1414 -11.0592 1.0851 22 6 2.5116 -9.9859 0.4307 23 6 3.0060 -8.6759 0.5407 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7309 0.8925 26 1 3.1252 -3.7316 -0.8875 27 1 3.7984 -6.1856 0.0801 28 1 0.7301 -7.0835 -1.3929 29 1 -0.1578 -9.3379 -1.6077 30 1 -0.0154 -11.7450 -1.0547 31 1 1.1178 -13.5638 0.1023 32 1 3.1211 -13.1387 1.4610 33 1 4.0227 -10.8872 1.6851 34 1 3.8852 -8.4744 1.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003184321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -14.606836 kcal Electronic energy + Delta-G solvation = -18482.163578 eV Core-core repulsion = 15469.916951 eV Total energy + Delta-G solvation = -3012.246627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75979 -40.52608 -37.61117 -35.32765 -34.59885 -33.47405 -31.60149 -30.44789 -29.17323 -27.67169 -24.41085 -24.06838 -22.92916 -21.80850 -19.93840 -19.09090 -18.24005 -17.97877 -17.24003 -16.89396 -16.54149 -16.16769 -15.82480 -15.53547 -14.95367 -14.77413 -14.63732 -14.42194 -14.25259 -14.06832 -13.63390 -13.18103 -13.02830 -12.92608 -12.63060 -12.56800 -12.18231 -11.76195 -11.73413 -11.31607 -11.17024 -10.92985 -10.65277 -10.30646 -9.26284 -8.70999 -8.62586 -8.36363 -6.14683 -0.41593 0.02578 1.08247 1.22410 1.41076 1.43556 1.44441 1.56526 2.06366 2.19597 2.25327 2.98336 3.19460 3.26400 3.66474 3.80470 3.94467 4.07794 4.16609 4.24675 4.28653 4.36661 4.44895 4.47072 4.50661 4.79301 4.94121 5.04405 5.15115 5.29027 5.37164 5.41381 5.47623 5.63983 5.67814 5.91643 6.12378 6.18850 6.32844 7.05003 7.05871 8.73096 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.056292 B = 0.002769 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.282960 B =10110.209222 C =10469.201589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.148 6.148 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.540 6.540 13 N -0.658 5.658 14 C 0.143 3.857 15 C -0.138 4.138 16 C -0.092 4.092 17 C -0.084 4.084 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.050 4.050 23 C -0.138 4.138 24 H 0.271 0.729 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.429 0.571 28 H 0.111 0.889 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -24.129 0.493 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.416 6.416 13 N -0.306 5.306 14 C 0.049 3.951 15 C -0.158 4.158 16 C -0.111 4.111 17 C -0.085 4.085 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.051 4.051 23 C -0.159 4.159 24 H 0.080 0.920 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.268 0.732 28 H 0.129 0.871 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.022 -24.284 0.474 25.579 hybrid contribution 1.658 1.701 -0.109 2.378 sum 9.679 -22.583 0.365 24.572 Atomic orbital electron populations 1.70185 1.07991 1.28591 1.48056 1.26138 0.95973 1.03380 0.93749 0.84889 0.78642 0.76284 0.78035 1.17934 1.19992 1.19994 1.23234 0.95414 0.91818 1.58769 0.89700 1.85616 1.10168 0.99252 1.97080 1.23364 1.03903 0.93240 1.07444 1.20309 0.86216 0.86676 0.74581 1.90716 1.17166 1.85755 1.47934 1.43348 1.11387 1.03112 1.72725 1.17867 0.96116 0.84210 0.96949 1.20899 0.97287 0.97940 0.99637 1.21099 0.99729 0.91207 0.99033 1.18376 0.96160 0.94768 0.99157 1.21285 1.00508 0.91134 1.00091 1.21216 0.95945 1.00133 0.96929 1.21245 0.96231 0.97448 0.98274 1.21273 1.00612 0.92005 0.99704 1.18128 0.95209 0.93857 0.97870 1.21159 1.02947 0.90925 1.00892 0.91981 0.86503 0.86569 0.73162 0.87069 0.83862 0.84051 0.83437 0.83212 0.83426 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.65 9.50 67.95 0.65 -30.00 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 10 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 11 C 0.53 19.65 7.57 87.66 0.66 20.32 16 12 O -0.54 -24.77 13.55 -3.04 -0.04 -24.81 16 13 N -0.66 -17.64 5.32 -303.56 -1.62 -19.25 16 14 C 0.14 3.97 6.25 38.15 0.24 4.21 16 15 C -0.14 -4.27 8.55 22.16 0.19 -4.08 16 16 C -0.09 -2.39 9.75 22.31 0.22 -2.18 16 17 C -0.08 -1.97 5.74 -21.28 -0.12 -2.09 16 18 C -0.11 -2.02 9.76 22.33 0.22 -1.80 16 19 C -0.12 -1.77 9.95 22.05 0.22 -1.55 16 20 C -0.11 -1.56 9.95 22.04 0.22 -1.34 16 21 C -0.12 -1.93 9.77 22.35 0.22 -1.71 16 22 C -0.05 -1.11 5.74 -21.30 -0.12 -1.23 16 23 C -0.14 -3.08 9.70 22.68 0.22 -2.86 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16 26 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 27 H 0.43 7.81 8.81 -92.71 -0.82 6.99 16 28 H 0.11 4.01 6.40 -2.91 -0.02 3.99 16 29 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -76.70 313.38 3.52 -73.19 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.31 Total: 17.96 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.71 Total: -27.63 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -1.33 Total: -74.70 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -76.70 3.52 -73.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003184321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.579 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds