Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86803 * 119.99918 * 2 1 4 4 H 1.48492 * 109.47254 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47037 * 120.00545 * 3 2 1 6 6 H 1.48507 * 109.47151 * 239.99965 * 3 2 1 7 7 C 1.39060 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99897 * 167.81075 * 7 2 1 9 9 N 1.36811 * 119.99627 * 347.81348 * 7 2 1 10 10 C 1.34783 * 119.99911 * 148.57746 * 9 7 2 11 11 O 1.21696 * 119.99807 * 5.61268 * 10 9 7 12 12 C 1.46845 * 120.00003 * 185.61562 * 10 9 7 13 13 C 1.33829 * 124.66678 * 187.18746 * 12 10 9 14 14 C 1.40381 * 115.55418 * 179.97438 * 13 12 10 15 15 C 1.41585 * 128.83694 * 180.02562 * 14 13 12 16 16 C 1.35930 * 120.49133 * 179.97438 * 15 14 13 17 17 C 1.38966 * 120.69213 * 359.96791 * 16 15 14 18 18 C 1.37426 * 120.18872 * 0.05249 * 17 16 15 19 19 C 1.39865 * 120.18458 * 359.95164 * 18 17 16 20 20 S 1.75487 * 124.66793 * 6.88065 * 12 10 9 21 21 C 1.46501 * 120.00314 * 328.57410 * 9 7 2 22 22 C 1.53003 * 117.49533 * 315.98890 * 21 9 7 23 23 C 1.52997 * 117.49760 * 247.36574 * 21 9 7 24 24 H 0.97005 * 120.00435 * 355.04388 * 1 2 3 25 25 H 1.07998 * 122.21881 * 359.94105 * 13 12 10 26 26 H 1.08002 * 119.75930 * 359.97438 * 15 14 13 27 27 H 1.07993 * 119.65211 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.90987 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.90808 * 179.97438 * 18 17 16 30 30 H 1.09001 * 115.55005 * 101.69546 * 21 9 7 31 31 H 1.08996 * 117.50005 * 359.97438 * 22 21 9 32 32 H 1.08998 * 117.49445 * 145.02397 * 22 21 9 33 33 H 1.09003 * 117.50156 * 214.97371 * 23 21 9 34 34 H 1.09000 * 117.50055 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1014 1.6964 1.2125 6 1 3.1013 1.6965 -1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0706 -1.2147 -0.1980 9 7 1.3479 -2.3758 0.2491 10 6 1.7640 -3.5205 -0.3282 11 8 2.7860 -3.5323 -0.9888 12 6 0.9841 -4.7533 -0.1601 13 6 1.3765 -5.9646 -0.5722 14 6 0.4797 -7.0127 -0.3122 15 6 0.6080 -8.3884 -0.6214 16 6 -0.3754 -9.2652 -0.2870 17 6 -1.5231 -8.8293 0.3641 18 6 -1.6772 -7.5001 0.6774 19 6 -0.6793 -6.5786 0.3437 20 16 -0.5875 -4.8423 0.6158 21 6 0.1879 -2.3862 1.1438 22 6 0.2950 -1.5941 2.4484 23 6 0.3306 -3.1234 2.4768 24 1 -0.4851 0.8369 0.0726 25 1 2.3203 -6.1248 -1.0722 26 1 1.4939 -8.7439 -1.1267 27 1 -0.2636 -10.3115 -0.5298 28 1 -2.2964 -9.5369 0.6242 29 1 -2.5712 -7.1662 1.1830 30 1 -0.7845 -2.4184 0.6525 31 1 1.2286 -1.0656 2.6411 32 1 -0.6072 -1.1048 2.8155 33 1 -0.5481 -3.6402 2.8628 34 1 1.2874 -3.6011 2.6880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058279195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 48.807474 kcal Electronic energy + Delta-G solvation = -19961.017991 eV Core-core repulsion = 16951.521214 eV Total energy + Delta-G solvation = -3009.496776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39647 -38.84662 -36.39699 -34.62841 -33.19168 -31.32558 -30.81238 -29.12802 -25.71010 -23.68881 -22.82593 -21.87148 -21.64308 -20.65626 -18.77557 -17.67882 -17.03940 -16.27272 -15.36907 -15.30396 -15.14131 -14.46302 -14.07098 -13.97003 -13.82856 -13.38057 -13.14950 -12.93886 -12.61300 -12.08200 -11.50679 -11.40551 -11.16973 -11.01636 -10.90713 -10.87094 -10.69558 -10.47119 -10.26128 -10.03407 -9.49165 -9.28940 -8.99984 -8.64012 -8.11246 -7.82861 -7.24691 -6.45381 -4.05413 0.77646 1.46408 1.97858 2.41929 2.44734 3.14954 3.18859 3.21747 3.87809 3.99025 4.20179 4.49710 4.54242 4.90797 5.01288 5.03933 5.17066 5.46831 5.48814 5.60111 5.63645 5.80928 5.91678 5.99254 6.10076 6.17074 6.20932 6.37026 6.53469 6.57651 6.66954 6.76731 6.78370 6.95444 7.05606 7.42469 8.01129 8.32379 9.00527 9.19643 9.78632 10.58782 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.005049 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.268758 B = 5543.804460 C = 6078.525753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.045 3.955 3 Si 0.923 3.077 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.311 4.311 8 H 0.099 0.901 9 N -0.401 5.401 10 C 0.511 3.489 11 O -0.571 6.571 12 C -0.168 4.168 13 C -0.099 4.099 14 C -0.070 4.070 15 C -0.081 4.081 16 C -0.129 4.129 17 C -0.116 4.116 18 C -0.082 4.082 19 C -0.181 4.181 20 S 0.161 5.839 21 C 0.096 3.904 22 C -0.132 4.132 23 C -0.208 4.208 24 H 0.271 0.729 25 H 0.145 0.855 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -11.126 4.557 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.162 4.162 3 Si 0.748 3.252 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.438 4.438 8 H 0.117 0.883 9 N -0.117 5.117 10 C 0.299 3.701 11 O -0.457 6.457 12 C -0.287 4.287 13 C -0.131 4.131 14 C -0.079 4.079 15 C -0.101 4.101 16 C -0.149 4.149 17 C -0.138 4.138 18 C -0.104 4.104 19 C -0.296 4.296 20 S 0.433 5.567 21 C -0.012 4.012 22 C -0.170 4.170 23 C -0.248 4.248 24 H 0.082 0.918 25 H 0.163 0.837 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.992 -9.799 4.817 12.455 hybrid contribution 1.100 -0.177 -0.680 1.306 sum -4.891 -9.976 4.136 11.855 Atomic orbital electron populations 1.69889 1.06064 1.28411 1.44896 1.25377 0.95353 0.99726 0.95715 0.86056 0.79190 0.80546 0.79361 1.20749 1.19706 1.19546 1.19530 0.93797 0.82444 1.48054 0.88300 1.42896 1.25634 1.06587 1.36587 1.16936 0.87166 0.82381 0.83602 1.90659 1.25772 1.84820 1.44419 1.24218 0.99525 0.98772 1.06223 1.20047 1.00784 0.90010 1.02236 1.18235 0.94098 0.94372 1.01191 1.20785 0.99032 0.91150 0.99089 1.20556 0.94463 0.99354 1.00572 1.20962 0.97967 0.95109 0.99744 1.20416 0.97302 0.92282 1.00404 1.23852 0.98889 1.01822 1.05031 1.84954 1.16415 0.97172 1.58197 1.21209 0.91285 1.03782 0.84930 1.22748 1.02942 0.91974 0.99316 1.23555 1.02932 0.96053 1.02238 0.91837 0.83704 0.86024 0.86154 0.85949 0.86082 0.86695 0.88485 0.89221 0.88360 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.75 11.23 55.50 0.62 -21.13 16 2 C 0.05 1.14 4.64 -17.45 -0.08 1.06 16 3 Si 0.92 19.89 29.57 -169.99 -5.03 14.87 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.39 8.61 -15.03 -0.13 -8.52 16 8 H 0.10 2.80 7.53 -52.49 -0.40 2.40 16 9 N -0.40 -10.18 2.89 -109.15 -0.32 -10.50 16 10 C 0.51 13.06 7.52 -12.78 -0.10 12.97 16 11 O -0.57 -16.33 16.51 5.19 0.09 -16.24 16 12 C -0.17 -3.58 6.01 -37.65 -0.23 -3.80 16 13 C -0.10 -1.90 9.80 -40.32 -0.40 -2.30 16 14 C -0.07 -1.19 5.87 -107.13 -0.63 -1.82 16 15 C -0.08 -1.11 10.03 -39.13 -0.39 -1.51 16 16 C -0.13 -1.52 9.94 -40.14 -0.40 -1.92 16 17 C -0.12 -1.36 10.03 -39.61 -0.40 -1.75 16 18 C -0.08 -1.10 10.07 -39.27 -0.40 -1.50 16 19 C -0.18 -2.96 6.50 -38.29 -0.25 -3.21 16 20 S 0.16 2.85 16.34 -107.50 -1.76 1.10 16 21 C 0.10 2.07 2.20 -67.93 -0.15 1.92 16 22 C -0.13 -2.56 8.76 -26.73 -0.23 -2.80 16 23 C -0.21 -3.71 7.77 -26.73 -0.21 -3.92 16 24 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 25 H 0.15 2.74 7.97 -52.49 -0.42 2.32 16 26 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 2.56 7.08 -51.93 -0.37 2.20 16 31 H 0.10 2.02 7.81 -51.93 -0.41 1.61 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.10 1.49 7.43 -51.93 -0.39 1.11 16 34 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 300.27 15.07 4.52 4.52 Total: -1.00 -29.96 300.27 -9.49 -39.45 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.64 Total: 5.01 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -3.98 Total: -17.09 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.31 Total: -31.62 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.09 Total: -16.24 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.76 Total: 1.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.96 -9.49 -39.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058279195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.261 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds