Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86803 * 119.99918 * 2 1 4 4 H 1.48492 * 109.47254 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47037 * 120.00545 * 3 2 1 6 6 H 1.48507 * 109.47151 * 239.99965 * 3 2 1 7 7 C 1.39060 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99897 * 167.81075 * 7 2 1 9 9 N 1.36811 * 119.99627 * 347.81348 * 7 2 1 10 10 C 1.34783 * 119.99911 * 148.57746 * 9 7 2 11 11 O 1.21696 * 119.99807 * 5.61268 * 10 9 7 12 12 C 1.46845 * 120.00003 * 185.61562 * 10 9 7 13 13 C 1.33829 * 124.66678 * 187.18746 * 12 10 9 14 14 C 1.40381 * 115.55418 * 179.97438 * 13 12 10 15 15 C 1.41585 * 128.83694 * 180.02562 * 14 13 12 16 16 C 1.35930 * 120.49133 * 179.97438 * 15 14 13 17 17 C 1.38966 * 120.69213 * 359.96791 * 16 15 14 18 18 C 1.37426 * 120.18872 * 0.05249 * 17 16 15 19 19 C 1.39865 * 120.18458 * 359.95164 * 18 17 16 20 20 S 1.75487 * 124.66793 * 6.88065 * 12 10 9 21 21 C 1.46501 * 120.00314 * 328.57410 * 9 7 2 22 22 C 1.53003 * 117.49533 * 315.98890 * 21 9 7 23 23 C 1.52997 * 117.49760 * 247.36574 * 21 9 7 24 24 H 0.97005 * 120.00435 * 355.04388 * 1 2 3 25 25 H 1.07998 * 122.21881 * 359.94105 * 13 12 10 26 26 H 1.08002 * 119.75930 * 359.97438 * 15 14 13 27 27 H 1.07993 * 119.65211 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.90987 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.90808 * 179.97438 * 18 17 16 30 30 H 1.09001 * 115.55005 * 101.69546 * 21 9 7 31 31 H 1.08996 * 117.50005 * 359.97438 * 22 21 9 32 32 H 1.08998 * 117.49445 * 145.02397 * 22 21 9 33 33 H 1.09003 * 117.50156 * 214.97371 * 23 21 9 34 34 H 1.09000 * 117.50055 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1014 1.6964 1.2125 6 1 3.1013 1.6965 -1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0706 -1.2147 -0.1980 9 7 1.3479 -2.3758 0.2491 10 6 1.7640 -3.5205 -0.3282 11 8 2.7860 -3.5323 -0.9888 12 6 0.9841 -4.7533 -0.1601 13 6 1.3765 -5.9646 -0.5722 14 6 0.4797 -7.0127 -0.3122 15 6 0.6080 -8.3884 -0.6214 16 6 -0.3754 -9.2652 -0.2870 17 6 -1.5231 -8.8293 0.3641 18 6 -1.6772 -7.5001 0.6774 19 6 -0.6793 -6.5786 0.3437 20 16 -0.5875 -4.8423 0.6158 21 6 0.1879 -2.3862 1.1438 22 6 0.2950 -1.5941 2.4484 23 6 0.3306 -3.1234 2.4768 24 1 -0.4851 0.8369 0.0726 25 1 2.3203 -6.1248 -1.0722 26 1 1.4939 -8.7439 -1.1267 27 1 -0.2636 -10.3115 -0.5298 28 1 -2.2964 -9.5369 0.6242 29 1 -2.5712 -7.1662 1.1830 30 1 -0.7845 -2.4184 0.6525 31 1 1.2286 -1.0656 2.6411 32 1 -0.6072 -1.1048 2.8155 33 1 -0.5481 -3.6402 2.8628 34 1 1.2874 -3.6011 2.6880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058279195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 32.271376 kcal Electronic energy + Delta-G solvation = -19961.735050 eV Core-core repulsion = 16951.521214 eV Total energy + Delta-G solvation = -3010.213835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89238 -40.34050 -38.13574 -35.99790 -35.03851 -33.23852 -31.86705 -30.49230 -27.50744 -25.13766 -24.07795 -23.41619 -23.25274 -22.04413 -20.29347 -19.19485 -18.81775 -17.71229 -17.17961 -16.70182 -16.52181 -15.99097 -15.62876 -15.48297 -15.36917 -14.77324 -14.46513 -14.38968 -14.04701 -13.70669 -13.18363 -12.93339 -12.74003 -12.61074 -12.44463 -12.17398 -12.13921 -12.08267 -11.71641 -11.68852 -11.03696 -10.83373 -10.50865 -10.50355 -9.75969 -9.38633 -8.56312 -8.36638 -6.09437 -0.54844 0.40264 0.59373 1.07341 1.09165 1.39817 1.42376 1.49339 2.21196 2.28109 2.77072 2.84784 2.89422 3.15793 3.67891 3.90498 4.02791 4.12687 4.19102 4.23978 4.37579 4.41303 4.51394 4.75431 4.82184 4.84190 4.96824 5.04749 5.14366 5.22100 5.34017 5.39084 5.44307 5.51440 5.60723 6.03627 6.04757 6.40540 7.03664 7.27155 7.85882 8.64906 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.005049 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.268758 B = 5543.804460 C = 6078.525753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.021 3.979 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.280 1.280 7 C -0.353 4.353 8 H 0.068 0.932 9 N -0.411 5.411 10 C 0.496 3.504 11 O -0.625 6.625 12 C -0.219 4.219 13 C -0.081 4.081 14 C -0.104 4.104 15 C -0.086 4.086 16 C -0.121 4.121 17 C -0.092 4.092 18 C -0.096 4.096 19 C -0.183 4.183 20 S 0.179 5.821 21 C 0.073 3.927 22 C -0.130 4.130 23 C -0.172 4.172 24 H 0.278 0.722 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.057 -13.752 5.879 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.480 4.480 8 H 0.086 0.914 9 N -0.126 5.126 10 C 0.287 3.713 11 O -0.515 6.515 12 C -0.338 4.338 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.106 4.106 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.298 4.298 20 S 0.450 5.550 21 C -0.034 4.034 22 C -0.168 4.168 23 C -0.212 4.212 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.156 0.844 27 H 0.178 0.822 28 H 0.183 0.817 29 H 0.164 0.836 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.688 -12.414 6.171 16.361 hybrid contribution 1.833 0.300 -1.144 2.181 sum -6.856 -12.114 5.027 14.799 Atomic orbital electron populations 1.69942 1.06739 1.29444 1.44333 1.26009 0.96176 1.01771 0.94517 0.85186 0.78248 0.77072 0.79013 1.18959 1.18888 1.20568 1.19441 0.93094 0.84254 1.51229 0.91408 1.43042 1.26317 1.06030 1.37205 1.17619 0.86953 0.83954 0.82800 1.90576 1.28121 1.86166 1.46598 1.23800 1.02026 0.97450 1.10533 1.20242 1.00625 0.90501 1.00074 1.18314 0.94165 0.95298 1.03343 1.21105 1.00577 0.89913 0.98995 1.21078 0.93389 1.00890 0.98719 1.21558 0.98346 0.94867 0.96602 1.20824 0.97420 0.92664 1.00910 1.24042 0.99619 1.01120 1.05064 1.84471 1.13729 0.98812 1.58005 1.21233 0.89580 1.07222 0.85399 1.22780 1.02932 0.93145 0.97910 1.23551 1.03851 0.95152 0.98640 0.91191 0.84781 0.84415 0.82217 0.81654 0.83625 0.87530 0.90402 0.87088 0.84887 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.91 11.23 21.68 0.24 -44.66 16 2 C 0.02 1.10 4.64 84.96 0.39 1.50 16 3 Si 0.98 41.82 29.57 68.60 2.03 43.85 16 4 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.35 -20.35 8.61 84.11 0.72 -19.62 16 8 H 0.07 4.20 7.53 -2.91 -0.02 4.18 16 9 N -0.41 -22.22 2.89 -617.44 -1.78 -24.00 16 10 C 0.50 27.39 7.52 86.49 0.65 28.04 16 11 O -0.63 -39.00 16.51 -4.34 -0.07 -39.08 16 12 C -0.22 -9.84 6.01 23.52 0.14 -9.70 16 13 C -0.08 -3.25 9.80 21.79 0.21 -3.04 16 14 C -0.10 -3.39 5.87 -21.49 -0.13 -3.52 16 15 C -0.09 -2.12 10.03 22.56 0.23 -1.89 16 16 C -0.12 -2.20 9.94 21.91 0.22 -1.98 16 17 C -0.09 -1.60 10.03 22.25 0.22 -1.37 16 18 C -0.10 -2.17 10.07 22.47 0.23 -1.94 16 19 C -0.18 -5.63 6.50 23.11 0.15 -5.48 16 20 S 0.18 6.28 16.34 -56.49 -0.92 5.35 16 21 C 0.07 3.23 2.20 44.99 0.10 3.33 16 22 C -0.13 -5.07 8.76 30.60 0.27 -4.81 16 23 C -0.17 -6.11 7.77 30.59 0.24 -5.88 16 24 H 0.28 13.32 8.31 -92.70 -0.77 12.55 16 25 H 0.13 5.45 7.97 -2.91 -0.02 5.43 16 26 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.11 4.87 7.08 -2.39 -0.02 4.86 16 31 H 0.08 3.34 7.81 -2.39 -0.02 3.32 16 32 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.13 3.75 7.43 -2.39 -0.02 3.74 16 34 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -71.20 300.27 4.26 -66.94 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.12 Total: 17.95 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.65 Total: -26.36 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.54 Total: -68.66 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.07 Total: -39.08 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -0.92 Total: 5.35 kcal Total: -71.20 4.26 -66.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058279195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.215 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds