Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81400 * 109.47374 * 2 1 4 4 O 1.42104 * 108.57512 * 65.51631 * 3 2 1 5 5 O 1.42098 * 108.57739 * 294.48995 * 3 2 1 6 6 C 1.81402 * 101.92193 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.47099 * 180.02562 * 6 3 2 8 8 O 1.21303 * 119.99816 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27969 * 7 6 3 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40649 * 126.08553 * 359.68015 * 10 9 7 12 12 N 1.30903 * 108.38945 * 179.87998 * 11 10 9 13 13 N 1.40074 * 108.40705 * 0.38914 * 12 11 10 14 14 C 1.37320 * 126.07077 * 179.73305 * 13 12 11 15 15 H 1.07999 * 120.00028 * 180.02562 * 14 13 12 16 16 C 1.38983 * 120.00055 * 0.02562 * 14 13 12 17 17 N 1.31296 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47382 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46738 * 120.00166 * 18 16 14 21 21 H 1.48494 * 109.47440 * 239.99960 * 18 16 14 22 22 C 1.35679 * 126.07814 * 179.97438 * 10 9 7 23 23 H 1.09007 * 109.46661 * 299.99726 * 1 2 3 24 24 H 1.09002 * 109.47283 * 59.99218 * 1 2 3 25 25 H 1.08990 * 109.47575 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46661 * 240.00274 * 2 1 3 27 27 H 1.08997 * 109.47092 * 120.00372 * 2 1 3 28 28 H 1.09009 * 109.46681 * 60.00042 * 6 3 2 29 29 H 1.08998 * 109.47004 * 300.00520 * 6 3 2 30 30 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 31 31 H 1.07999 * 125.80209 * 0.02562 * 11 10 9 32 32 H 0.97004 * 120.00252 * 179.97438 * 17 16 14 33 33 H 1.07996 * 126.24944 * 359.92772 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3231 1.2259 5 8 1.7592 2.3232 -1.2258 6 6 3.9330 1.4718 -0.0008 7 6 4.6177 2.8143 -0.0002 8 8 3.9574 3.8319 0.0011 9 7 5.9636 2.8842 -0.0064 10 6 6.6024 4.1367 -0.0116 11 6 5.9662 5.3911 -0.0175 12 7 6.8872 6.3213 -0.0186 13 7 8.1428 5.7005 -0.0225 14 6 9.3595 6.3371 -0.0298 15 1 10.2716 5.7587 -0.0327 16 6 9.4172 7.7257 -0.0335 17 7 8.3084 8.4288 -0.0295 18 14 11.0723 8.5917 -0.0428 19 1 12.1600 7.5807 -0.0455 20 1 11.1811 9.4384 -1.2579 21 1 11.1916 9.4445 1.1670 22 6 7.9422 4.3503 -0.0175 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.2252 0.9148 -0.8911 29 1 4.2260 0.9145 0.8889 30 1 6.4917 2.0705 -0.0070 31 1 4.8992 5.5583 -0.0184 32 1 8.3486 9.3980 -0.0318 33 1 8.7100 3.5908 -0.0180 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139296919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -16.799249 kcal Electronic energy + Delta-G solvation = -20152.885590 eV Core-core repulsion = 16729.694630 eV Total energy + Delta-G solvation = -3423.190960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02357 -38.71431 -36.95759 -35.97743 -34.39828 -33.44796 -33.22817 -30.85735 -30.08613 -27.55812 -24.91188 -24.28813 -21.37844 -20.59002 -19.51047 -18.84312 -17.76369 -16.98559 -16.76329 -16.46323 -15.72779 -15.47624 -15.21735 -15.05538 -14.44511 -14.04586 -13.61664 -13.41628 -13.32708 -12.92837 -12.79446 -12.62881 -12.00281 -11.95958 -11.85882 -11.71800 -11.49627 -11.29217 -11.11655 -10.98460 -10.61080 -10.51633 -10.29887 -9.57051 -9.22063 -8.84395 -8.09210 -6.78145 -6.57674 -4.25827 -0.22525 2.58848 2.66060 2.97719 3.03553 3.10436 3.19731 3.61213 3.75479 3.86993 3.87984 4.31126 4.33237 4.43516 4.53352 4.81730 4.86716 4.87161 5.00244 5.10305 5.28860 5.31045 5.61778 6.19254 6.38099 6.80008 6.91468 6.99655 7.19152 7.81940 8.00721 8.21853 8.48462 8.71596 9.34349 9.63340 10.38196 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.063712 B = 0.003160 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.369975 B = 8857.532326 C = 9111.448230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.625 4.625 3 S 2.454 3.546 4 O -0.918 6.918 5 O -0.918 6.918 6 C -0.654 4.654 7 C 0.522 3.478 8 O -0.526 6.526 9 N -0.608 5.608 10 C -0.069 4.069 11 C -0.029 4.029 12 N -0.259 5.259 13 N -0.141 5.141 14 C -0.323 4.323 15 H 0.117 0.883 16 C 0.045 3.955 17 N -0.767 5.767 18 Si 0.936 3.064 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.400 0.600 31 H 0.178 0.822 32 H 0.275 0.725 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 -18.802 0.033 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.753 4.753 3 S 2.630 3.370 4 O -0.915 6.915 5 O -0.915 6.915 6 C -0.782 4.782 7 C 0.305 3.695 8 O -0.404 6.404 9 N -0.250 5.250 10 C -0.175 4.175 11 C -0.204 4.204 12 N -0.090 5.090 13 N 0.092 4.908 14 C -0.455 4.455 15 H 0.135 0.865 16 C -0.172 4.172 17 N -0.393 5.393 18 Si 0.760 3.240 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.232 4.232 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.234 0.766 31 H 0.195 0.805 32 H 0.086 0.914 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.692 -15.795 0.033 17.568 hybrid contribution 1.568 -2.064 -0.001 2.592 sum -6.124 -17.858 0.032 18.879 Atomic orbital electron populations 1.21505 0.90274 1.04702 1.04020 1.30378 1.07737 1.25801 1.11369 1.07437 0.76499 0.77162 0.75895 1.93587 1.79910 1.72222 1.45808 1.93586 1.79916 1.72218 1.45814 1.30807 1.28525 1.06055 1.12822 1.18830 0.83080 0.88020 0.79554 1.90763 1.63939 1.35300 1.50393 1.42274 1.04964 1.07561 1.70162 1.17264 0.90801 0.84545 1.24859 1.24179 1.00187 0.88716 1.07347 1.78289 0.86422 1.18573 1.25711 1.44603 1.05604 1.01850 1.38737 1.19933 0.81652 0.90537 1.53397 0.86501 1.25667 0.99393 0.96684 0.95463 1.70227 1.26893 1.07272 1.34930 0.85743 0.80231 0.79513 0.78515 1.18702 1.19878 1.19875 1.21228 0.94527 0.87578 1.19907 0.90683 0.90675 0.90177 0.85045 0.85047 0.82715 0.82725 0.76648 0.80482 0.91396 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.62 -3.68 6.52 37.16 0.24 -3.43 16 3 S 2.45 28.55 3.96 -107.50 -0.43 28.12 16 4 O -0.92 -14.57 17.95 -59.54 -1.07 -15.63 16 5 O -0.92 -14.57 17.95 -59.51 -1.07 -15.64 16 6 C -0.65 -6.37 6.29 36.01 0.23 -6.15 16 7 C 0.52 9.04 7.82 -10.98 -0.09 8.96 16 8 O -0.53 -11.73 12.78 2.54 0.03 -11.70 16 9 N -0.61 -10.57 5.47 -10.00 -0.05 -10.62 16 10 C -0.07 -1.60 6.90 -83.84 -0.58 -2.18 16 11 C -0.03 -0.77 10.85 -17.04 -0.18 -0.96 16 12 N -0.26 -7.65 10.40 30.80 0.32 -7.33 16 13 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 14 C -0.32 -8.53 10.25 -14.82 -0.15 -8.68 16 15 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 16 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 17 N -0.77 -21.56 11.81 55.49 0.66 -20.90 16 18 Si 0.94 18.90 29.55 -169.99 -5.02 13.87 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.15 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.15 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.40 4.95 8.83 -40.82 -0.36 4.59 16 31 H 0.18 4.78 5.92 -52.49 -0.31 4.47 16 32 H 0.28 7.05 8.31 -40.82 -0.34 6.72 16 33 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -40.37 306.39 -6.10 -46.47 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.60 Total: 6.73 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.45 Total: -14.06 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.88 Total: -42.78 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -2.10 Total: -42.97 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 28.55 SS G_CDS: -0.43 Total: 28.12 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -40.37 -6.10 -46.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139296919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.672 kcal (2) G-P(sol) polarization free energy of solvation -40.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds