Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81400 * 109.47374 * 2 1 4 4 O 1.42104 * 108.57512 * 65.51631 * 3 2 1 5 5 O 1.42098 * 108.57739 * 294.48995 * 3 2 1 6 6 C 1.81402 * 101.92193 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.47099 * 180.02562 * 6 3 2 8 8 O 1.21303 * 119.99816 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27969 * 7 6 3 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40649 * 126.08553 * 359.68015 * 10 9 7 12 12 N 1.30903 * 108.38945 * 179.87998 * 11 10 9 13 13 N 1.40074 * 108.40705 * 0.38914 * 12 11 10 14 14 C 1.37320 * 126.07077 * 179.73305 * 13 12 11 15 15 H 1.07999 * 120.00028 * 180.02562 * 14 13 12 16 16 C 1.38983 * 120.00055 * 0.02562 * 14 13 12 17 17 N 1.31296 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47382 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46738 * 120.00166 * 18 16 14 21 21 H 1.48494 * 109.47440 * 239.99960 * 18 16 14 22 22 C 1.35679 * 126.07814 * 179.97438 * 10 9 7 23 23 H 1.09007 * 109.46661 * 299.99726 * 1 2 3 24 24 H 1.09002 * 109.47283 * 59.99218 * 1 2 3 25 25 H 1.08990 * 109.47575 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46661 * 240.00274 * 2 1 3 27 27 H 1.08997 * 109.47092 * 120.00372 * 2 1 3 28 28 H 1.09009 * 109.46681 * 60.00042 * 6 3 2 29 29 H 1.08998 * 109.47004 * 300.00520 * 6 3 2 30 30 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 31 31 H 1.07999 * 125.80209 * 0.02562 * 11 10 9 32 32 H 0.97004 * 120.00252 * 179.97438 * 17 16 14 33 33 H 1.07996 * 126.24944 * 359.92772 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3231 1.2259 5 8 1.7592 2.3232 -1.2258 6 6 3.9330 1.4718 -0.0008 7 6 4.6177 2.8143 -0.0002 8 8 3.9574 3.8319 0.0011 9 7 5.9636 2.8842 -0.0064 10 6 6.6024 4.1367 -0.0116 11 6 5.9662 5.3911 -0.0175 12 7 6.8872 6.3213 -0.0186 13 7 8.1428 5.7005 -0.0225 14 6 9.3595 6.3371 -0.0298 15 1 10.2716 5.7587 -0.0327 16 6 9.4172 7.7257 -0.0335 17 7 8.3084 8.4288 -0.0295 18 14 11.0723 8.5917 -0.0428 19 1 12.1600 7.5807 -0.0455 20 1 11.1811 9.4384 -1.2579 21 1 11.1916 9.4445 1.1670 22 6 7.9422 4.3503 -0.0175 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.2252 0.9148 -0.8911 29 1 4.2260 0.9145 0.8889 30 1 6.4917 2.0705 -0.0070 31 1 4.8992 5.5583 -0.0184 32 1 8.3486 9.3980 -0.0318 33 1 8.7100 3.5908 -0.0180 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139296919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -51.996212 kcal Electronic energy + Delta-G solvation = -20154.411845 eV Core-core repulsion = 16729.694630 eV Total energy + Delta-G solvation = -3424.717215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78604 -40.36541 -37.95349 -36.96162 -36.06803 -35.06732 -33.94735 -32.43411 -31.62689 -29.31064 -26.77127 -24.95168 -23.07504 -22.28402 -21.29730 -19.73624 -19.45252 -18.27145 -17.88067 -17.42145 -17.33517 -16.87133 -16.49984 -16.32779 -15.67443 -15.29450 -15.08045 -14.96866 -14.79211 -13.95116 -13.64801 -13.51241 -13.37657 -13.33350 -13.03694 -12.97438 -12.93583 -12.88524 -12.30675 -12.03957 -11.99289 -11.96487 -11.26653 -11.10259 -11.07900 -10.83846 -10.14325 -8.60503 -8.48595 -6.27304 -1.03919 1.11812 1.39684 1.42157 1.59381 1.81647 1.86366 1.95027 2.18418 2.43421 2.78262 3.02370 3.07669 3.13394 3.64916 3.80893 3.93915 4.13633 4.33880 4.40667 4.48485 4.56857 4.79589 4.89877 4.97354 5.01406 5.18287 5.25863 5.37340 5.93190 6.24337 6.55408 6.70147 7.23202 7.44108 7.63635 8.51013 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.063712 B = 0.003160 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.369975 B = 8857.532326 C = 9111.448230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.576 4.576 3 S 2.421 3.579 4 O -0.983 6.983 5 O -0.983 6.983 6 C -0.633 4.633 7 C 0.507 3.493 8 O -0.584 6.584 9 N -0.599 5.599 10 C -0.054 4.054 11 C -0.064 4.064 12 N -0.312 5.312 13 N -0.167 5.167 14 C -0.352 4.352 15 H 0.145 0.855 16 C -0.010 4.010 17 N -0.826 5.826 18 Si 1.022 2.978 19 H -0.237 1.237 20 H -0.274 1.274 21 H -0.273 1.273 22 C -0.074 4.074 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.174 0.826 27 H 0.174 0.826 28 H 0.209 0.791 29 H 0.209 0.791 30 H 0.428 0.572 31 H 0.163 0.837 32 H 0.276 0.724 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -23.546 0.031 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.710 4.710 3 S 2.606 3.394 4 O -0.980 6.980 5 O -0.980 6.980 6 C -0.761 4.761 7 C 0.294 3.706 8 O -0.466 6.466 9 N -0.244 5.244 10 C -0.160 4.160 11 C -0.239 4.239 12 N -0.144 5.144 13 N 0.064 4.936 14 C -0.483 4.483 15 H 0.163 0.837 16 C -0.221 4.221 17 N -0.453 5.453 18 Si 0.841 3.159 19 H -0.160 1.160 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.224 4.224 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.132 0.868 26 H 0.192 0.808 27 H 0.192 0.808 28 H 0.226 0.774 29 H 0.226 0.774 30 H 0.267 0.733 31 H 0.180 0.820 32 H 0.086 0.914 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.692 -20.563 0.031 21.336 hybrid contribution 0.802 -0.840 0.001 1.161 sum -4.890 -21.402 0.033 21.954 Atomic orbital electron populations 1.21738 0.90984 1.06446 1.03299 1.30019 1.06773 1.18535 1.15627 1.07921 0.77455 0.80341 0.73697 1.93513 1.81142 1.76048 1.47281 1.93512 1.81149 1.76046 1.47288 1.30692 1.25414 1.01985 1.18057 1.20174 0.82809 0.90411 0.77200 1.90764 1.65185 1.38538 1.52070 1.42217 1.05473 1.06462 1.70263 1.17360 0.90793 0.85808 1.22060 1.24179 0.99555 0.90838 1.09346 1.78177 0.88005 1.20621 1.27560 1.44919 1.05260 1.03344 1.40064 1.20718 0.82224 0.91576 1.53803 0.83728 1.26957 1.03725 0.97331 0.94099 1.70420 1.30118 1.07592 1.37218 0.84495 0.75083 0.78212 0.78123 1.15999 1.19877 1.19872 1.22039 0.95669 0.87145 1.17572 0.91677 0.91671 0.86829 0.80801 0.80802 0.77358 0.77359 0.73291 0.82048 0.91393 0.78759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.92 71.98 0.71 -0.97 16 2 C -0.58 -3.77 6.52 71.98 0.47 -3.31 16 3 S 2.42 53.54 3.96 -56.49 -0.22 53.32 16 4 O -0.98 -32.32 17.95 -125.74 -2.26 -34.57 16 5 O -0.98 -32.33 17.95 -125.77 -2.26 -34.59 16 6 C -0.63 -9.70 6.29 71.24 0.45 -9.25 16 7 C 0.51 17.02 7.82 87.66 0.69 17.71 16 8 O -0.58 -27.36 12.78 -0.23 0.00 -27.36 16 9 N -0.60 -19.53 5.47 -303.92 -1.66 -21.19 16 10 C -0.05 -2.49 6.90 37.73 0.26 -2.23 16 11 C -0.06 -3.66 10.85 85.42 0.93 -2.73 16 12 N -0.31 -19.42 10.40 -56.47 -0.59 -20.01 16 13 N -0.17 -9.37 3.74 -190.02 -0.71 -10.08 16 14 C -0.35 -18.63 10.25 84.01 0.86 -17.77 16 15 H 0.15 6.53 7.83 -2.91 -0.02 6.50 16 16 C -0.01 -0.51 5.50 84.95 0.47 -0.04 16 17 N -0.83 -48.64 11.81 21.66 0.26 -48.39 16 18 Si 1.02 38.75 29.55 68.60 2.03 40.78 16 19 H -0.24 -7.92 7.11 99.48 0.71 -7.21 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 C -0.07 -3.37 11.49 83.37 0.96 -2.41 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.17 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.17 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.21 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.21 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.43 8.72 8.83 -92.71 -0.82 7.90 16 31 H 0.16 9.55 5.92 -2.91 -0.02 9.53 16 32 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.20 6.68 8.06 -2.91 -0.02 6.65 16 Total: -1.00 -101.74 306.39 0.71 -101.04 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.33 Total: 22.05 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 5.79 Total: -21.01 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -2.70 Total: -99.66 kcal Atomic # 8 Polarization: -92.01 SS G_CDS: -4.52 Total: -96.52 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -0.22 Total: 53.32 kcal Total: -101.74 0.71 -101.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139296919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.039 kcal (2) G-P(sol) polarization free energy of solvation -101.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds