Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42099 * 108.57889 * 2 1 4 4 O 1.42094 * 108.57649 * 228.97492 * 2 1 3 5 5 C 1.81396 * 101.92179 * 114.49065 * 2 1 3 6 6 C 1.50695 * 109.47526 * 180.02562 * 5 2 1 7 7 O 1.21297 * 119.99358 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00677 * 180.02562 * 6 5 2 9 9 C 1.40154 * 120.00504 * 179.97438 * 8 6 5 10 10 C 1.40411 * 125.97106 * 0.02562 * 9 8 6 11 11 C 1.35241 * 107.86611 * 179.74212 * 10 9 8 12 12 N 1.34965 * 107.86302 * 0.38043 * 11 10 9 13 13 C 1.46495 * 125.97869 * 179.87777 * 12 11 10 14 14 C 1.50702 * 109.47571 * 124.71943 * 13 12 11 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31221 * 125.97729 * 179.97438 * 9 8 6 23 23 H 1.09002 * 109.47523 * 305.51146 * 1 2 3 24 24 H 1.09003 * 109.47328 * 65.50988 * 1 2 3 25 25 H 1.08997 * 109.47672 * 185.51027 * 1 2 3 26 26 H 1.09000 * 109.47659 * 59.99360 * 5 2 1 27 27 H 1.09009 * 109.47142 * 299.99726 * 5 2 1 28 28 H 0.97004 * 119.99445 * 359.97438 * 8 6 5 29 29 H 1.07998 * 126.06914 * 359.97438 * 10 9 8 30 30 H 1.08001 * 126.07068 * 180.26820 * 11 10 9 31 31 H 1.09000 * 109.47378 * 4.71603 * 13 12 11 32 32 H 1.09001 * 109.47153 * 244.71723 * 13 12 11 33 33 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.6826 -0.8173 1.7957 7 8 4.4218 -0.4187 0.9205 8 7 4.1973 -1.3340 2.9290 9 6 5.5867 -1.4103 3.0966 10 6 6.5536 -0.9874 2.1705 11 6 7.7727 -1.2251 2.7057 12 7 7.5897 -1.7850 3.9200 13 6 8.6476 -2.2048 4.8424 14 6 8.4457 -1.5344 6.1769 15 1 7.6129 -0.8625 6.3232 16 6 9.3248 -1.7781 7.2108 17 7 9.1517 -1.1888 8.3737 18 14 10.7656 -2.9397 6.9576 19 1 10.3567 -4.3212 7.3175 20 1 11.1867 -2.9030 5.5341 21 1 11.8987 -2.5183 7.8200 22 7 6.2113 -1.8886 4.1468 23 1 -0.3634 0.5969 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3634 -1.0229 0.0987 26 1 1.7610 -1.7370 1.6665 27 1 1.7610 -0.1171 2.4043 28 1 3.6061 -1.6531 3.6287 29 1 6.3585 -0.5466 1.2040 30 1 8.7239 -1.0075 2.2427 31 1 9.6181 -1.9202 4.4360 32 1 8.6102 -3.2866 4.9700 33 1 9.7724 -1.3571 9.0999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265528590.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = -6.974055 kcal Electronic energy + Delta-G solvation = -19950.034268 eV Core-core repulsion = 16527.269360 eV Total energy + Delta-G solvation = -3422.764908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89268 -39.51604 -37.21782 -36.22758 -35.04511 -33.39279 -31.76763 -30.70119 -29.75409 -29.45122 -27.09760 -23.05984 -21.99927 -20.43524 -19.83081 -19.08758 -17.59053 -17.28311 -16.93493 -16.63157 -16.36832 -16.04482 -15.47152 -15.28779 -14.52476 -14.17690 -13.81484 -13.68524 -13.62440 -13.13697 -13.06933 -12.60951 -12.43658 -12.26649 -12.20279 -12.13019 -11.48065 -11.25162 -11.14206 -10.93552 -10.62331 -10.33269 -10.07365 -9.92062 -9.58313 -8.79878 -8.29663 -7.64110 -6.26646 -4.29389 -0.46438 1.97922 2.37528 2.44528 2.74144 3.14092 3.19248 3.21421 3.36027 3.50889 3.68379 3.70223 4.20048 4.24401 4.26588 4.35569 4.66929 4.71545 5.01143 5.19125 5.36071 5.60943 6.03580 6.29945 6.36359 6.43346 6.59701 7.15555 7.21467 7.38852 7.74336 7.89641 8.28998 8.45833 8.82374 9.28053 10.86007 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.049797 B = 0.003050 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.146519 B = 9179.003768 C = 9414.544731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.459 3.541 3 O -0.918 6.918 4 O -0.919 6.919 5 C -0.658 4.658 6 C 0.548 3.452 7 O -0.507 6.507 8 N -0.617 5.617 9 C 0.254 3.746 10 C -0.282 4.282 11 C 0.054 3.946 12 N -0.317 5.317 13 C 0.231 3.769 14 C -0.536 4.536 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.887 5.887 18 Si 0.875 3.125 19 H -0.272 1.272 20 H -0.264 1.264 21 H -0.280 1.280 22 N -0.293 5.293 23 H 0.130 0.870 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.416 0.584 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -0.497 -14.196 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.634 3.366 3 O -0.915 6.915 4 O -0.916 6.916 5 C -0.785 4.785 6 C 0.331 3.669 7 O -0.381 6.381 8 N -0.264 5.264 9 C 0.000 4.000 10 C -0.313 4.313 11 C -0.095 4.095 12 N -0.099 5.099 13 C 0.112 3.888 14 C -0.574 4.574 15 H 0.103 0.897 16 C -0.128 4.128 17 N -0.524 5.524 18 Si 0.701 3.299 19 H -0.197 1.197 20 H -0.189 1.189 21 H -0.206 1.206 22 N -0.123 5.123 23 H 0.148 0.852 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.181 0.819 27 H 0.181 0.819 28 H 0.251 0.749 29 H 0.182 0.818 30 H 0.189 0.811 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.296 -0.475 -14.010 21.496 hybrid contribution -0.127 -0.722 0.574 0.932 sum -16.423 -1.197 -13.436 21.252 Atomic orbital electron populations 1.30399 1.26983 1.11688 1.12117 1.07136 0.77518 0.75852 0.76072 1.93615 1.78668 1.33953 1.85263 1.93607 1.78717 1.67232 1.52082 1.30910 1.01997 1.16856 1.28710 1.19019 0.87707 0.78000 0.82165 1.90816 1.59921 1.46485 1.40896 1.42185 1.04098 1.60840 1.19323 1.19069 0.83655 1.02387 0.94855 1.21590 0.89625 1.16014 1.04094 1.22582 0.99986 0.99229 0.87680 1.48657 1.03607 1.44488 1.13114 1.20089 0.82734 0.96492 0.89447 1.21100 1.14363 1.28825 0.93134 0.89651 1.24834 0.97490 0.95651 0.94778 1.69871 1.37366 1.42499 1.02704 0.86879 0.82490 0.81642 0.78868 1.19699 1.18920 1.20556 1.77384 0.88808 1.26444 1.19701 0.85172 0.84864 0.85215 0.81941 0.81875 0.74851 0.81830 0.81116 0.92748 0.94371 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.77 10.62 101.05 1.07 -0.70 16 2 S 2.46 19.72 4.60 -107.50 -0.49 19.23 16 3 O -0.92 -11.59 17.94 -59.54 -1.07 -12.66 16 4 O -0.92 -11.37 17.95 -59.52 -1.07 -12.44 16 5 C -0.66 -4.14 6.29 36.00 0.23 -3.91 16 6 C 0.55 7.29 7.82 -10.99 -0.09 7.20 16 7 O -0.51 -8.76 12.75 2.53 0.03 -8.73 16 8 N -0.62 -8.91 5.45 -11.13 -0.06 -8.97 16 9 C 0.25 4.95 8.11 -154.39 -1.25 3.70 16 10 C -0.28 -5.49 9.61 -39.83 -0.38 -5.87 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 N -0.32 -7.09 3.67 -62.56 -0.23 -7.32 16 13 C 0.23 5.41 5.33 -5.20 -0.03 5.38 16 14 C -0.54 -14.98 9.79 -34.44 -0.34 -15.32 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 18 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 N -0.29 -6.57 12.42 31.44 0.39 -6.18 16 23 H 0.13 0.09 8.14 -51.92 -0.42 -0.33 16 24 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.16 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.16 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.42 4.51 8.82 -40.82 -0.36 4.15 16 29 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16 30 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 31 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 32 H 0.04 0.88 7.57 -51.93 -0.39 0.48 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -41.03 305.99 -6.42 -47.45 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.56 Total: 1.94 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.08 Total: -6.63 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.87 Total: -48.07 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -2.10 Total: -33.82 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Atomic # 16 Polarization: 19.72 SS G_CDS: -0.49 Total: 19.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -41.03 -6.42 -47.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265528590.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.477 kcal (2) G-P(sol) polarization free energy of solvation -41.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds