Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42099 * 108.57889 * 2 1 4 4 O 1.42094 * 108.57649 * 228.97492 * 2 1 3 5 5 C 1.81396 * 101.92179 * 114.49065 * 2 1 3 6 6 C 1.50695 * 109.47526 * 180.02562 * 5 2 1 7 7 O 1.21297 * 119.99358 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00677 * 180.02562 * 6 5 2 9 9 C 1.40154 * 120.00504 * 179.97438 * 8 6 5 10 10 C 1.40411 * 125.97106 * 0.02562 * 9 8 6 11 11 C 1.35241 * 107.86611 * 179.74212 * 10 9 8 12 12 N 1.34965 * 107.86302 * 0.38043 * 11 10 9 13 13 C 1.46495 * 125.97869 * 179.87777 * 12 11 10 14 14 C 1.50702 * 109.47571 * 124.71943 * 13 12 11 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31221 * 125.97729 * 179.97438 * 9 8 6 23 23 H 1.09002 * 109.47523 * 305.51146 * 1 2 3 24 24 H 1.09003 * 109.47328 * 65.50988 * 1 2 3 25 25 H 1.08997 * 109.47672 * 185.51027 * 1 2 3 26 26 H 1.09000 * 109.47659 * 59.99360 * 5 2 1 27 27 H 1.09009 * 109.47142 * 299.99726 * 5 2 1 28 28 H 0.97004 * 119.99445 * 359.97438 * 8 6 5 29 29 H 1.07998 * 126.06914 * 359.97438 * 10 9 8 30 30 H 1.08001 * 126.07068 * 180.26820 * 11 10 9 31 31 H 1.09000 * 109.47378 * 4.71603 * 13 12 11 32 32 H 1.09001 * 109.47153 * 244.71723 * 13 12 11 33 33 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.6826 -0.8173 1.7957 7 8 4.4218 -0.4187 0.9205 8 7 4.1973 -1.3340 2.9290 9 6 5.5867 -1.4103 3.0966 10 6 6.5536 -0.9874 2.1705 11 6 7.7727 -1.2251 2.7057 12 7 7.5897 -1.7850 3.9200 13 6 8.6476 -2.2048 4.8424 14 6 8.4457 -1.5344 6.1769 15 1 7.6129 -0.8625 6.3232 16 6 9.3248 -1.7781 7.2108 17 7 9.1517 -1.1888 8.3737 18 14 10.7656 -2.9397 6.9576 19 1 10.3567 -4.3212 7.3175 20 1 11.1867 -2.9030 5.5341 21 1 11.8987 -2.5183 7.8200 22 7 6.2113 -1.8886 4.1468 23 1 -0.3634 0.5969 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3634 -1.0229 0.0987 26 1 1.7610 -1.7370 1.6665 27 1 1.7610 -0.1171 2.4043 28 1 3.6061 -1.6531 3.6287 29 1 6.3585 -0.5466 1.2040 30 1 8.7239 -1.0075 2.2427 31 1 9.6181 -1.9202 4.4360 32 1 8.6102 -3.2866 4.9700 33 1 9.7724 -1.3571 9.0999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265528590.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = -42.723678 kcal Electronic energy + Delta-G solvation = -19951.584488 eV Core-core repulsion = 16527.269360 eV Total energy + Delta-G solvation = -3424.315128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32904 -40.76999 -37.95320 -36.96636 -36.40397 -35.27189 -33.35093 -31.65608 -30.99953 -30.13286 -28.84948 -24.77107 -23.34426 -21.98009 -21.18008 -19.74994 -19.13097 -18.62909 -18.25521 -17.57873 -17.36023 -16.85263 -16.69127 -16.50522 -16.12018 -15.45804 -15.15748 -14.82284 -14.45772 -14.00756 -13.90994 -13.89952 -13.82462 -13.61278 -13.03298 -13.01206 -12.96035 -12.67524 -12.24405 -12.11233 -11.84263 -11.76710 -11.63292 -11.54931 -11.25309 -10.88739 -9.85216 -9.20493 -8.38747 -6.49369 -1.01284 0.76901 1.21419 1.31859 1.37598 1.39707 1.48828 1.86550 2.09707 2.17547 2.28075 2.90296 2.94078 3.15847 3.38698 3.87980 3.99071 4.16444 4.19265 4.32520 4.37579 4.56926 4.67835 4.82460 4.84297 5.05197 5.06584 5.22454 5.79035 5.96174 6.04807 6.36309 6.55843 6.76117 6.98155 7.13668 8.78249 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.049797 B = 0.003050 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.146519 B = 9179.003768 C = 9414.544731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.440 3.560 3 O -0.982 6.982 4 O -0.980 6.980 5 C -0.641 4.641 6 C 0.535 3.465 7 O -0.552 6.552 8 N -0.613 5.613 9 C 0.259 3.741 10 C -0.299 4.299 11 C 0.063 3.937 12 N -0.342 5.342 13 C 0.238 3.762 14 C -0.548 4.548 15 H 0.027 0.973 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.955 3.045 19 H -0.264 1.264 20 H -0.230 1.230 21 H -0.278 1.278 22 N -0.340 5.340 23 H 0.163 0.837 24 H 0.141 0.859 25 H 0.164 0.836 26 H 0.213 0.787 27 H 0.210 0.790 28 H 0.432 0.568 29 H 0.166 0.834 30 H 0.211 0.789 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.801 -1.903 -15.045 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.624 3.376 3 O -0.979 6.979 4 O -0.977 6.977 5 C -0.768 4.768 6 C 0.322 3.678 7 O -0.429 6.429 8 N -0.262 5.262 9 C 0.004 3.996 10 C -0.330 4.330 11 C -0.085 4.085 12 N -0.124 5.124 13 C 0.119 3.881 14 C -0.586 4.586 15 H 0.045 0.955 16 C -0.184 4.184 17 N -0.580 5.580 18 Si 0.776 3.224 19 H -0.189 1.189 20 H -0.153 1.153 21 H -0.204 1.204 22 N -0.170 5.170 23 H 0.181 0.819 24 H 0.160 0.840 25 H 0.183 0.817 26 H 0.230 0.770 27 H 0.227 0.773 28 H 0.271 0.729 29 H 0.183 0.817 30 H 0.228 0.772 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.646 -1.871 -14.898 23.170 hybrid contribution 0.041 -0.200 0.831 0.856 sum -17.606 -2.071 -14.067 22.631 Atomic orbital electron populations 1.30080 1.18665 1.14869 1.14138 1.07168 0.80495 0.74000 0.75947 1.93542 1.81673 1.36551 1.86165 1.93536 1.81650 1.67833 1.54682 1.30894 0.96561 1.20647 1.28707 1.20266 0.90597 0.76171 0.80733 1.90797 1.61980 1.47935 1.42196 1.42396 1.02248 1.61067 1.20535 1.19500 0.86051 1.00330 0.93755 1.21800 0.90141 1.16687 1.04395 1.23240 1.01631 0.97179 0.86424 1.48559 1.03525 1.46315 1.14035 1.19936 0.84319 0.96385 0.87495 1.21224 1.12839 1.28451 0.96109 0.95467 1.25913 1.01024 0.97524 0.93918 1.70044 1.39168 1.44729 1.04106 0.85618 0.77550 0.78517 0.80696 1.18929 1.15308 1.20373 1.77298 0.89397 1.28852 1.21491 0.81914 0.84019 0.81745 0.76981 0.77318 0.72913 0.81664 0.77214 0.89896 0.93532 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.26 10.62 113.37 1.20 0.95 16 2 S 2.44 35.94 4.60 -56.49 -0.26 35.68 16 3 O -0.98 -25.39 17.94 -125.74 -2.26 -27.65 16 4 O -0.98 -24.58 17.95 -125.75 -2.26 -26.84 16 5 C -0.64 -5.98 6.29 71.23 0.45 -5.53 16 6 C 0.54 13.80 7.82 87.66 0.69 14.49 16 7 O -0.55 -19.58 12.75 -0.20 0.00 -19.58 16 8 N -0.61 -17.30 5.45 -307.52 -1.68 -18.98 16 9 C 0.26 10.23 8.11 133.33 1.08 11.31 16 10 C -0.30 -11.76 9.61 22.11 0.21 -11.55 16 11 C 0.06 2.39 11.44 83.52 0.96 3.34 16 12 N -0.34 -15.37 3.67 -351.85 -1.29 -16.66 16 13 C 0.24 10.97 5.33 85.63 0.46 11.43 16 14 C -0.55 -31.48 9.79 25.60 0.25 -31.23 16 15 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 16 C 0.02 0.85 5.47 84.65 0.46 1.32 16 17 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 18 Si 0.96 40.45 27.47 68.60 1.88 42.33 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 22 N -0.34 -15.59 12.42 -54.45 -0.68 -16.27 16 23 H 0.16 -0.82 8.14 -2.39 -0.02 -0.83 16 24 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.16 -0.90 8.14 -2.39 -0.02 -0.92 16 26 H 0.21 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.21 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.43 8.79 8.82 -92.71 -0.82 7.97 16 29 H 0.17 6.44 5.92 -2.91 -0.02 6.42 16 30 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 31 H 0.08 3.33 7.12 -2.39 -0.02 3.31 16 32 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -99.43 305.99 -0.20 -99.63 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.28 Total: 11.28 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.76 Total: -5.48 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.34 Total: -109.36 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -4.52 Total: -74.07 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Atomic # 16 Polarization: 35.94 SS G_CDS: -0.26 Total: 35.68 kcal Total: -99.43 -0.20 -99.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265528590.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.904 kcal (2) G-P(sol) polarization free energy of solvation -99.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds