Wall clock time and date at job start Wed Apr 15 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99951 * 2 1 4 4 H 1.48500 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47453 * 300.00550 * 3 2 1 6 6 H 1.48498 * 109.47309 * 60.00201 * 3 2 1 7 7 C 1.37878 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99774 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46793 * 179.97438 * 9 7 2 11 11 C 1.30679 * 120.00214 * 114.11159 * 10 9 7 12 12 C 1.46950 * 120.08760 * 353.42326 * 11 10 9 13 13 C 1.35048 * 119.43667 * 180.02562 * 12 11 10 14 14 C 1.46550 * 119.51934 * 359.97438 * 13 12 11 15 15 N 1.31696 * 132.91375 * 180.02562 * 14 13 12 16 16 N 1.28675 * 109.39080 * 179.97438 * 15 14 13 17 17 C 1.30972 * 110.05807 * 0.02562 * 16 15 14 18 18 C 1.50702 * 126.24170 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47036 * 14.97172 * 18 17 16 20 20 F 1.39898 * 109.47424 * 134.97264 * 18 17 16 21 21 F 1.39902 * 109.47047 * 254.97191 * 18 17 16 22 22 N 1.35016 * 107.51954 * 359.97438 * 17 16 15 23 23 N 1.38158 * 120.09626 * 173.44172 * 11 10 9 24 24 H 0.97002 * 119.82670 * 359.97438 * 23 11 10 25 25 H 0.97006 * 119.99974 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47436 * 59.99987 * 9 7 2 27 27 H 1.08998 * 109.47508 * 299.99287 * 9 7 2 28 28 H 1.08000 * 120.28518 * 0.27709 * 12 11 10 29 29 H 1.07996 * 120.24285 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.2770 -4.4102 1.0308 12 6 1.5133 -4.1099 2.2498 13 6 1.5999 -4.9429 3.3093 14 6 2.4530 -6.1316 3.2254 15 7 2.7278 -7.0998 4.0748 16 7 3.5457 -7.9288 3.5275 17 6 3.8347 -7.5380 2.3113 18 6 4.7554 -8.2385 1.3456 19 9 4.9992 -9.5407 1.7949 20 9 4.1574 -8.2856 0.0818 21 9 5.9645 -7.5395 1.2636 22 7 3.1564 -6.3937 2.0801 23 7 3.0737 -5.5377 0.9795 24 1 3.5778 -5.7361 0.1749 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 0.8849 -3.2328 2.2967 29 1 1.0440 -4.7350 4.2115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342182294.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:22 Heat of formation + Delta-G solvation = 23.150314 kcal Electronic energy + Delta-G solvation = -22102.638550 eV Core-core repulsion = 18036.171992 eV Total energy + Delta-G solvation = -4066.466558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.069 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.66108 -48.20730 -48.12817 -43.71602 -38.72192 -35.49415 -33.98800 -32.88628 -31.50724 -30.51589 -27.25535 -26.99190 -24.08259 -23.70273 -22.78725 -21.57444 -19.80157 -19.11296 -18.99411 -18.19143 -17.52091 -16.89558 -16.54738 -16.22284 -15.58053 -14.99026 -14.91253 -14.63811 -14.55537 -14.26569 -14.25529 -13.75799 -13.64167 -13.26657 -12.71436 -12.61564 -12.35885 -12.02412 -11.62279 -11.18890 -11.13724 -10.94348 -10.74279 -10.35625 -9.74089 -9.32367 -8.98660 -8.50704 -7.81266 -6.30211 -4.35890 0.48229 0.61962 1.28363 1.75548 2.30255 2.82816 3.13313 3.15755 3.23388 3.26655 3.32929 3.64025 3.78845 3.96866 4.23843 4.36974 4.56998 4.89320 5.04341 5.16899 5.36426 5.70242 5.91122 6.00879 6.70920 6.98849 7.03146 7.21331 7.64616 7.91146 7.92149 8.38234 8.73245 9.30426 10.78404 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.027618 B = 0.003998 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.582056 B = 7002.330151 C = 7484.311574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.190 3.810 10 N -0.512 5.512 11 C 0.354 3.646 12 C -0.083 4.083 13 C -0.082 4.082 14 C 0.230 3.770 15 N -0.247 5.247 16 N -0.204 5.204 17 C 0.067 3.933 18 C 0.572 3.428 19 F -0.144 7.144 20 F -0.163 7.163 21 F -0.159 7.159 22 N -0.224 5.224 23 N -0.506 5.506 24 H 0.438 0.562 25 H 0.266 0.734 26 H 0.057 0.943 27 H 0.016 0.984 28 H 0.183 0.817 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -13.402 4.301 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.063 3.937 10 N -0.233 5.233 11 C 0.078 3.922 12 C -0.109 4.109 13 C -0.107 4.107 14 C -0.032 4.032 15 N -0.093 5.093 16 N -0.053 5.053 17 C -0.199 4.199 18 C 0.515 3.485 19 F -0.125 7.125 20 F -0.145 7.145 21 F -0.140 7.140 22 N 0.003 4.997 23 N -0.249 5.249 24 H 0.284 0.716 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.200 0.800 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.406 -13.898 4.617 15.611 hybrid contribution 0.424 1.600 -1.020 1.944 sum 5.831 -12.298 3.597 14.078 Atomic orbital electron populations 1.69936 1.06025 1.27421 1.49657 1.24978 0.94999 0.99495 0.94681 0.86330 0.80022 0.82656 0.77846 1.19608 1.20668 1.20713 1.21079 0.93662 0.89037 1.52059 0.91736 1.20085 0.89517 0.85994 0.98069 1.71793 1.21130 1.06473 1.23942 1.19756 0.91929 0.87337 0.93198 1.23555 0.96758 0.99771 0.90851 1.21233 0.98591 0.89386 1.01501 1.23726 0.98049 0.99573 0.81844 1.74872 1.12086 1.00631 1.21746 1.74635 1.10008 1.19906 1.00760 1.23946 1.06588 0.90626 0.98756 1.16322 0.77656 0.77112 0.77438 1.93293 1.94214 1.36067 1.88880 1.93289 1.83444 1.96257 1.41482 1.93313 1.45827 1.78799 1.96095 1.44846 1.32070 1.14567 1.08222 1.43251 1.54593 1.20267 1.06835 0.71638 0.92411 0.92562 0.96630 0.79994 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 13.29 55.43 0.74 -23.41 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -13.59 9.39 -34.44 -0.32 -13.91 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.19 4.45 5.94 -5.19 -0.03 4.42 15 10 N -0.51 -10.52 10.62 -59.82 -0.64 -11.16 15 11 C 0.35 6.07 7.88 -154.09 -1.21 4.85 15 12 C -0.08 -1.24 9.32 -37.19 -0.35 -1.59 15 13 C -0.08 -1.04 10.29 -37.37 -0.38 -1.43 15 14 C 0.23 3.35 8.17 -154.58 -1.26 2.09 15 15 N -0.25 -3.79 12.29 32.23 0.40 -3.39 15 16 N -0.20 -3.10 12.04 32.78 0.39 -2.70 15 17 C 0.07 0.93 7.52 -155.04 -1.17 -0.24 15 18 C 0.57 6.71 3.57 36.01 0.13 6.84 15 19 F -0.14 -1.63 17.18 2.25 0.04 -1.59 15 20 F -0.16 -1.84 17.08 2.25 0.04 -1.80 15 21 F -0.16 -1.84 17.30 2.25 0.04 -1.81 15 22 N -0.22 -3.27 3.99 -8.29 -0.03 -3.30 15 23 N -0.51 -7.56 6.77 32.36 0.22 -7.34 15 24 H 0.44 5.92 8.72 -182.92 -1.60 4.32 15 25 H 0.27 6.80 8.31 -40.82 -0.34 6.47 15 26 H 0.06 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.02 0.36 5.21 -51.93 -0.27 0.09 15 28 H 0.18 2.75 5.89 -52.49 -0.31 2.44 15 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 15 LS Contribution 281.10 15.07 4.24 4.24 Total: -1.00 -28.18 281.10 -6.85 -35.03 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -2.57 Total: -0.59 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -4.70 Total: 2.55 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 1.08 Total: -51.31 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.12 Total: -5.20 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.18 -6.85 -35.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342182294.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.181 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds