Wall clock time and date at job start Wed Apr 15 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99814 * 2 1 4 4 H 1.07997 * 120.00209 * 202.97942 * 3 2 1 5 5 C 1.38818 * 119.99822 * 22.98060 * 3 2 1 6 6 N 1.31615 * 119.99883 * 15.80503 * 5 3 2 7 7 Si 1.86798 * 120.00014 * 195.80489 * 5 3 2 8 8 H 1.48504 * 109.46864 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47110 * 119.99869 * 7 5 3 10 10 H 1.48501 * 109.47179 * 239.99916 * 7 5 3 11 11 S 1.65597 * 120.00401 * 180.02562 * 2 1 3 12 12 O 1.42093 * 106.40267 * 156.45770 * 11 2 1 13 13 O 1.42102 * 106.40049 * 23.53682 * 11 2 1 14 14 C 1.76200 * 107.21559 * 270.00008 * 11 2 1 15 15 C 1.39833 * 126.06775 * 90.02442 * 14 11 2 16 16 C 1.37869 * 107.08607 * 179.71965 * 15 14 11 17 17 C 1.46681 * 126.23370 * 180.24450 * 16 15 14 18 18 N 1.34770 * 120.00093 * 356.12230 * 17 16 15 19 19 O 1.21698 * 119.99567 * 176.12788 * 17 16 15 20 20 N 1.37650 * 107.53268 * 0.24077 * 16 15 14 21 21 C 1.46500 * 125.67788 * 180.02562 * 20 16 15 22 22 C 1.35448 * 126.06786 * 270.15574 * 14 11 2 23 23 H 1.09001 * 109.47436 * 274.43643 * 1 2 3 24 24 H 1.08999 * 109.47347 * 34.44115 * 1 2 3 25 25 H 1.09007 * 109.47061 * 154.43792 * 1 2 3 26 26 H 0.97006 * 119.99902 * 180.02562 * 6 5 3 27 27 H 1.07999 * 126.45847 * 359.97438 * 15 14 11 28 28 H 0.96996 * 120.00493 * 4.78856 * 18 17 16 29 29 H 0.97008 * 119.99952 * 184.79416 * 18 17 16 30 30 H 1.09008 * 109.47183 * 89.29968 * 21 20 16 31 31 H 1.08999 * 109.47044 * 209.29726 * 21 20 16 32 32 H 1.09001 * 109.47288 * 329.29878 * 21 20 16 33 33 H 1.08000 * 125.56664 * 0.04299 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1653 1.2231 -0.3651 5 6 1.5381 2.3404 0.4694 6 7 0.4411 2.2569 1.1918 7 14 2.2722 4.0124 0.0757 8 1 3.4962 3.8345 -0.7461 9 1 1.2826 4.8220 -0.6798 10 1 2.6209 4.7099 1.3395 11 16 2.2931 -1.4341 -0.0006 12 8 3.5759 -1.1564 -0.5450 13 8 1.4114 -2.4062 -0.5455 14 6 2.5538 -1.8864 1.6822 15 6 1.6971 -2.6634 2.4681 16 6 2.2814 -2.7790 3.7115 17 6 1.7387 -3.5132 4.8596 18 7 0.5242 -4.0914 4.7767 19 8 2.3852 -3.6001 5.8869 20 7 3.4668 -2.0801 3.6792 21 6 4.4080 -1.9423 4.7934 22 6 3.6186 -1.5412 2.4450 23 1 -0.3634 0.0795 1.0246 24 1 -0.3634 0.8475 -0.5812 25 1 -0.3633 -0.9271 -0.4435 26 1 0.0136 3.0636 1.5194 27 1 0.7570 -3.0953 2.1581 28 1 0.0387 -4.0820 3.9370 29 1 0.1353 -4.5169 5.5569 30 1 5.1252 -2.7627 4.7668 31 1 4.9377 -0.9937 4.7063 32 1 3.8614 -1.9680 5.7361 33 1 4.4542 -0.9384 2.1212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352866745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:25 Heat of formation + Delta-G solvation = -54.368802 kcal Electronic energy + Delta-G solvation = -21212.563320 eV Core-core repulsion = 17787.743222 eV Total energy + Delta-G solvation = -3424.820098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08368 -38.66430 -35.78097 -35.54061 -34.40401 -33.97996 -32.42846 -31.39085 -29.04853 -26.43586 -26.34012 -23.46091 -23.00874 -20.91780 -19.56451 -18.45775 -18.01437 -16.85908 -16.65146 -16.27165 -15.73042 -15.44222 -14.81437 -14.58893 -14.28988 -14.12416 -13.94088 -13.33088 -13.11308 -12.69377 -12.29687 -12.20752 -12.05677 -11.73883 -11.41394 -11.03284 -10.99206 -10.73784 -10.56982 -10.26201 -10.18189 -10.08062 -9.87116 -9.76326 -9.24449 -8.68007 -8.08267 -7.96835 -6.46659 -3.97406 1.64815 1.84327 2.67499 2.88198 3.11974 3.19432 3.26270 3.48910 3.72664 4.05691 4.61755 4.85726 4.91373 4.98822 5.17967 5.27082 5.30725 5.53742 5.64762 5.84338 5.89962 6.41814 6.48716 6.68474 6.89935 6.92904 7.13409 7.16105 7.33587 7.34194 7.42476 7.49290 8.23622 8.35786 8.77506 9.22192 10.51616 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.006071 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.446045 B = 4610.902567 C = 4979.094005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.815 5.815 3 C -0.260 4.260 4 H 0.113 0.887 5 C 0.033 3.967 6 N -0.845 5.845 7 Si 0.922 3.078 8 H -0.263 1.263 9 H -0.278 1.278 10 H -0.281 1.281 11 S 2.589 3.411 12 O -0.990 6.990 13 O -1.003 7.003 14 C -0.728 4.728 15 C -0.050 4.050 16 C -0.084 4.084 17 C 0.601 3.399 18 N -0.844 5.844 19 O -0.562 6.562 20 N -0.412 5.412 21 C 0.066 3.934 22 C 0.132 3.868 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.270 0.730 27 H 0.149 0.851 28 H 0.406 0.594 29 H 0.406 0.594 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -5.119 5.600 7.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.642 5.642 3 C -0.405 4.405 4 H 0.130 0.870 5 C -0.178 4.178 6 N -0.484 5.484 7 Si 0.748 3.252 8 H -0.187 1.187 9 H -0.203 1.203 10 H -0.207 1.207 11 S 2.684 3.316 12 O -0.980 6.980 13 O -0.993 6.993 14 C -0.813 4.813 15 C -0.077 4.077 16 C -0.195 4.195 17 C 0.389 3.611 18 N -0.408 5.408 19 O -0.442 6.442 20 N -0.084 5.084 21 C -0.075 4.075 22 C -0.009 4.009 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.236 0.764 29 H 0.237 0.763 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.133 -5.715 5.943 8.322 hybrid contribution -0.177 0.795 0.843 1.172 sum 0.955 -4.920 6.786 8.436 Atomic orbital electron populations 1.21237 0.79562 0.99721 1.01838 1.53739 1.12918 1.18564 1.78936 1.19866 1.01301 0.83466 1.35821 0.86960 1.25633 0.96743 1.00640 0.94754 1.70115 1.18493 1.29800 1.30039 0.85925 0.79565 0.81230 0.78507 1.18653 1.20339 1.20664 1.08619 0.73360 0.73876 0.75718 1.93351 1.41695 1.84917 1.78002 1.93337 1.65707 1.61700 1.78535 1.32490 1.03173 1.15812 1.29776 1.20915 0.98468 0.97708 0.90560 1.19926 0.92458 1.10144 0.96997 1.16947 0.81102 0.77378 0.85657 1.43434 1.19710 1.60463 1.17163 1.90787 1.59409 1.62121 1.31933 1.44091 1.16068 1.37335 1.10952 1.22254 0.92879 1.02889 0.89485 1.21865 0.99353 0.97228 0.82408 0.92886 0.91397 0.93716 0.91946 0.83302 0.76430 0.76295 0.90712 0.89716 0.88281 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.72 8.95 59.85 0.54 3.25 16 2 N -0.82 -19.35 3.30 -66.68 -0.22 -19.58 16 3 C -0.26 -6.40 9.41 -15.06 -0.14 -6.54 16 4 H 0.11 2.75 7.19 -52.49 -0.38 2.38 16 5 C 0.03 0.80 5.03 -17.43 -0.09 0.71 16 6 N -0.84 -20.65 10.88 55.49 0.60 -20.05 16 7 Si 0.92 18.65 29.58 -169.99 -5.03 13.62 16 8 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 9 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 S 2.59 59.19 5.80 -107.50 -0.62 58.56 16 12 O -0.99 -24.57 16.64 -57.17 -0.95 -25.52 16 13 O -1.00 -24.04 16.43 -57.17 -0.94 -24.98 16 14 C -0.73 -14.88 6.17 -39.98 -0.25 -15.12 16 15 C -0.05 -0.91 10.15 -39.12 -0.40 -1.31 16 16 C -0.08 -1.47 6.89 -81.98 -0.56 -2.03 16 17 C 0.60 9.39 8.05 -12.86 -0.10 9.28 16 18 N -0.84 -9.26 8.86 30.26 0.27 -8.99 16 19 O -0.56 -9.95 15.57 5.19 0.08 -9.87 16 20 N -0.41 -7.05 3.16 -120.23 -0.38 -7.43 16 21 C 0.07 0.88 10.52 59.85 0.63 1.51 16 22 C 0.13 2.46 11.12 -16.91 -0.19 2.27 16 23 H 0.05 1.19 7.38 -51.93 -0.38 0.80 16 24 H 0.07 1.52 7.37 -51.93 -0.38 1.14 16 25 H 0.04 0.91 6.92 -51.92 -0.36 0.55 16 26 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 27 H 0.15 2.32 7.44 -52.49 -0.39 1.93 16 28 H 0.41 3.69 7.72 -40.82 -0.32 3.38 16 29 H 0.41 3.50 8.93 -40.82 -0.36 3.13 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.38 6.45 -51.93 -0.33 1.05 16 33 H 0.18 2.98 8.06 -52.49 -0.42 2.55 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -32.71 299.88 -6.55 -39.25 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.31 Total: 8.44 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.56 Total: -7.98 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.27 Total: -56.05 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -1.81 Total: -60.37 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 59.19 SS G_CDS: -0.62 Total: 58.56 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.71 -6.55 -39.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352866745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.116 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds