Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99814 * 2 1 4 4 H 1.07997 * 120.00209 * 202.97942 * 3 2 1 5 5 C 1.38818 * 119.99822 * 22.98060 * 3 2 1 6 6 N 1.31615 * 119.99883 * 15.80503 * 5 3 2 7 7 Si 1.86798 * 120.00014 * 195.80489 * 5 3 2 8 8 H 1.48504 * 109.46864 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47110 * 119.99869 * 7 5 3 10 10 H 1.48501 * 109.47179 * 239.99916 * 7 5 3 11 11 S 1.65597 * 120.00401 * 180.02562 * 2 1 3 12 12 O 1.42093 * 106.40267 * 156.45770 * 11 2 1 13 13 O 1.42102 * 106.40049 * 23.53682 * 11 2 1 14 14 C 1.76200 * 107.21559 * 270.00008 * 11 2 1 15 15 C 1.39833 * 126.06775 * 90.02442 * 14 11 2 16 16 C 1.37869 * 107.08607 * 179.71965 * 15 14 11 17 17 C 1.46681 * 126.23370 * 180.24450 * 16 15 14 18 18 N 1.34770 * 120.00093 * 356.12230 * 17 16 15 19 19 O 1.21698 * 119.99567 * 176.12788 * 17 16 15 20 20 N 1.37650 * 107.53268 * 0.24077 * 16 15 14 21 21 C 1.46500 * 125.67788 * 180.02562 * 20 16 15 22 22 C 1.35448 * 126.06786 * 270.15574 * 14 11 2 23 23 H 1.09001 * 109.47436 * 274.43643 * 1 2 3 24 24 H 1.08999 * 109.47347 * 34.44115 * 1 2 3 25 25 H 1.09007 * 109.47061 * 154.43792 * 1 2 3 26 26 H 0.97006 * 119.99902 * 180.02562 * 6 5 3 27 27 H 1.07999 * 126.45847 * 359.97438 * 15 14 11 28 28 H 0.96996 * 120.00493 * 4.78856 * 18 17 16 29 29 H 0.97008 * 119.99952 * 184.79416 * 18 17 16 30 30 H 1.09008 * 109.47183 * 89.29968 * 21 20 16 31 31 H 1.08999 * 109.47044 * 209.29726 * 21 20 16 32 32 H 1.09001 * 109.47288 * 329.29878 * 21 20 16 33 33 H 1.08000 * 125.56664 * 0.04299 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1653 1.2231 -0.3651 5 6 1.5381 2.3404 0.4694 6 7 0.4411 2.2569 1.1918 7 14 2.2722 4.0124 0.0757 8 1 3.4962 3.8345 -0.7461 9 1 1.2826 4.8220 -0.6798 10 1 2.6209 4.7099 1.3395 11 16 2.2931 -1.4341 -0.0006 12 8 3.5759 -1.1564 -0.5450 13 8 1.4114 -2.4062 -0.5455 14 6 2.5538 -1.8864 1.6822 15 6 1.6971 -2.6634 2.4681 16 6 2.2814 -2.7790 3.7115 17 6 1.7387 -3.5132 4.8596 18 7 0.5242 -4.0914 4.7767 19 8 2.3852 -3.6001 5.8869 20 7 3.4668 -2.0801 3.6792 21 6 4.4080 -1.9423 4.7934 22 6 3.6186 -1.5412 2.4450 23 1 -0.3634 0.0795 1.0246 24 1 -0.3634 0.8475 -0.5812 25 1 -0.3633 -0.9271 -0.4435 26 1 0.0136 3.0636 1.5194 27 1 0.7570 -3.0953 2.1581 28 1 0.0387 -4.0820 3.9370 29 1 0.1353 -4.5169 5.5569 30 1 5.1252 -2.7627 4.7668 31 1 4.9377 -0.9937 4.7063 32 1 3.8614 -1.9680 5.7361 33 1 4.4542 -0.9384 2.1212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352866745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = -80.441880 kcal Electronic energy + Delta-G solvation = -21213.693934 eV Core-core repulsion = 17787.743222 eV Total energy + Delta-G solvation = -3425.950712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.44414 -39.90511 -37.72361 -37.32249 -36.35721 -35.12372 -33.70364 -33.18651 -30.41973 -28.14855 -27.66120 -25.28211 -24.29934 -22.42120 -20.84799 -20.08194 -19.46354 -18.67761 -18.08430 -17.75598 -17.08324 -16.72745 -16.38575 -16.34650 -16.01409 -15.32138 -15.22051 -15.02121 -14.48542 -14.40507 -13.64815 -13.60760 -13.38699 -13.35125 -13.14085 -12.92180 -12.70078 -12.65072 -12.27738 -12.03705 -11.91992 -11.75295 -11.31323 -11.01891 -10.81632 -10.13050 -9.79800 -9.45068 -8.22643 -5.84188 0.05311 0.33629 1.14137 1.51345 1.55413 1.63250 1.67974 2.19729 2.38172 2.62514 2.85868 3.05626 3.38433 3.63843 3.87100 3.93856 4.09823 4.31045 4.38504 4.47035 4.61986 4.68169 4.96355 5.12432 5.35615 5.46438 5.52230 5.71429 5.74005 5.82042 6.08481 6.28935 6.54348 6.98920 7.16893 7.41117 8.76900 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.006071 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.446045 B = 4610.902567 C = 4979.094005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.836 5.836 3 C -0.297 4.297 4 H 0.104 0.896 5 C 0.001 3.999 6 N -0.875 5.875 7 Si 0.979 3.021 8 H -0.262 1.262 9 H -0.275 1.275 10 H -0.278 1.278 11 S 2.629 3.371 12 O -1.011 7.011 13 O -1.015 7.015 14 C -0.757 4.757 15 C -0.060 4.060 16 C -0.086 4.086 17 C 0.599 3.401 18 N -0.819 5.819 19 O -0.585 6.585 20 N -0.410 5.410 21 C 0.060 3.940 22 C 0.129 3.871 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.272 0.728 27 H 0.170 0.830 28 H 0.418 0.582 29 H 0.421 0.579 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -5.754 6.620 8.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.664 5.664 3 C -0.437 4.437 4 H 0.121 0.879 5 C -0.206 4.206 6 N -0.515 5.515 7 Si 0.803 3.197 8 H -0.185 1.185 9 H -0.201 1.201 10 H -0.204 1.204 11 S 2.727 3.273 12 O -1.001 7.001 13 O -1.005 7.005 14 C -0.847 4.847 15 C -0.086 4.086 16 C -0.198 4.198 17 C 0.386 3.614 18 N -0.384 5.384 19 O -0.467 6.467 20 N -0.081 5.081 21 C -0.080 4.080 22 C -0.014 4.014 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.188 0.812 28 H 0.249 0.751 29 H 0.254 0.746 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.334 -6.304 6.933 9.465 hybrid contribution -0.224 0.738 0.609 0.982 sum 1.110 -5.566 7.542 9.439 Atomic orbital electron populations 1.21144 0.79105 0.99931 1.01338 1.53474 1.13315 1.18467 1.81125 1.19845 1.01221 0.84552 1.38128 0.87861 1.26219 0.97036 1.03019 0.94373 1.70182 1.19657 1.30429 1.31195 0.85078 0.78832 0.77617 0.78212 1.18545 1.20060 1.20388 1.06097 0.72476 0.73030 0.75682 1.93333 1.42550 1.85329 1.78934 1.93329 1.66148 1.61771 1.79224 1.31919 1.05550 1.18727 1.28547 1.21206 0.99185 0.97617 0.90638 1.20327 0.92454 1.09689 0.97292 1.16847 0.82153 0.77661 0.84745 1.43261 1.18090 1.58645 1.18398 1.90783 1.60376 1.63157 1.32405 1.44369 1.16399 1.36191 1.11173 1.22531 0.92529 1.05098 0.87811 1.22098 0.99297 0.97046 0.82944 0.93558 0.92376 0.92365 0.91856 0.81215 0.75071 0.74563 0.89006 0.87159 0.88829 0.78594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.85 8.95 127.77 1.14 6.99 16 2 N -0.84 -40.02 3.30 -364.89 -1.21 -41.23 16 3 C -0.30 -14.81 9.41 84.03 0.79 -14.02 16 4 H 0.10 5.18 7.19 -2.91 -0.02 5.16 16 5 C 0.00 0.05 5.03 84.86 0.43 0.48 16 6 N -0.88 -43.25 10.88 21.65 0.24 -43.01 16 7 Si 0.98 38.40 29.58 68.60 2.03 40.43 16 8 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 9 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 11 S 2.63 119.34 5.80 -56.49 -0.33 119.01 16 12 O -1.01 -50.08 16.64 -128.00 -2.13 -52.21 16 13 O -1.01 -47.80 16.43 -128.00 -2.10 -49.90 16 14 C -0.76 -30.19 6.17 22.01 0.14 -30.05 16 15 C -0.06 -2.10 10.15 22.57 0.23 -1.87 16 16 C -0.09 -2.81 6.89 40.35 0.28 -2.53 16 17 C 0.60 17.30 8.05 86.45 0.70 18.00 16 18 N -0.82 -15.66 8.86 -176.39 -1.56 -17.23 16 19 O -0.58 -19.46 15.57 -4.34 -0.07 -19.53 16 20 N -0.41 -13.21 3.16 -534.31 -1.69 -14.90 16 21 C 0.06 1.45 10.52 127.77 1.34 2.79 16 22 C 0.13 4.61 11.12 83.48 0.93 5.54 16 23 H 0.05 2.09 7.38 -2.39 -0.02 2.08 16 24 H 0.06 2.65 7.37 -2.39 -0.02 2.63 16 25 H 0.06 2.36 6.92 -2.38 -0.02 2.35 16 26 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16 27 H 0.17 4.94 7.44 -2.91 -0.02 4.92 16 28 H 0.42 6.35 7.72 -92.71 -0.72 5.64 16 29 H 0.42 5.98 8.93 -92.70 -0.83 5.15 16 30 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.42 6.45 -2.39 -0.02 2.41 16 33 H 0.20 6.21 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -68.92 299.88 -1.21 -70.13 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.37 Total: 23.10 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.97 Total: -14.67 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.22 Total: -116.37 kcal Atomic # 8 Polarization: -117.34 SS G_CDS: -4.30 Total: -121.64 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 119.34 SS G_CDS: -0.33 Total: 119.01 kcal Total: -68.92 -1.21 -70.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352866745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.311 kcal (2) G-P(sol) polarization free energy of solvation -68.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds