Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47229 * 2 1 4 4 C 1.35465 * 116.99959 * 179.97438 * 3 2 1 5 5 N 1.32327 * 119.19263 * 359.97438 * 4 3 2 6 6 C 1.32283 * 120.75830 * 179.97438 * 5 4 3 7 7 C 1.38624 * 119.17257 * 0.02562 * 6 5 4 8 8 C 1.38569 * 118.52140 * 0.27632 * 7 6 5 9 9 C 1.50698 * 120.41583 * 179.72329 * 8 7 6 10 10 N 1.46499 * 109.47326 * 94.99224 * 9 8 7 11 11 S 1.65598 * 120.00367 * 165.00000 * 10 9 8 12 12 O 1.42097 * 106.40424 * 178.54385 * 11 10 9 13 13 O 1.42096 * 106.40087 * 311.46897 * 11 10 9 14 14 C 1.76200 * 107.21409 * 65.00405 * 11 10 9 15 15 H 1.08000 * 120.00397 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99918 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00031 * 180.02562 * 16 14 11 18 18 Si 1.86793 * 120.00040 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47006 * 90.00422 * 18 16 14 20 20 H 1.48504 * 109.47412 * 210.00180 * 18 16 14 21 21 H 1.48500 * 109.47220 * 330.00610 * 18 16 14 22 22 N 1.32307 * 119.19260 * 180.02562 * 4 3 2 23 23 H 1.08999 * 109.47410 * 59.99841 * 1 2 3 24 24 H 1.08999 * 109.47656 * 180.02562 * 1 2 3 25 25 H 1.09012 * 109.47099 * 300.00133 * 1 2 3 26 26 H 1.08996 * 109.46768 * 239.99988 * 2 1 3 27 27 H 1.09005 * 109.46757 * 119.99953 * 2 1 3 28 28 H 1.08001 * 120.41739 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.73663 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47599 * 214.99893 * 9 8 7 31 31 H 1.09007 * 109.46691 * 334.99873 * 9 8 7 32 32 H 0.97011 * 119.99896 * 345.00883 * 10 9 8 33 33 H 0.97000 * 120.00053 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3493 1.5247 0.0005 5 7 4.1405 0.4640 0.0015 6 6 5.4561 0.6014 0.0016 7 6 6.0025 1.8754 0.0011 8 6 5.1443 2.9633 0.0065 9 6 5.6921 4.3672 0.0124 10 7 5.7569 4.8720 -1.3613 11 16 5.9616 6.4916 -1.6396 12 8 6.0179 6.6524 -3.0503 13 8 5.0161 7.1625 -0.8180 14 6 7.5538 6.9292 -1.0250 15 1 8.1829 6.1776 -0.5713 16 6 7.9968 8.2312 -1.1231 17 7 9.1855 8.5577 -0.6648 18 14 6.9091 9.5310 -1.9084 19 1 6.0593 10.1609 -0.8661 20 1 7.7591 10.5678 -2.5471 21 1 6.0442 8.8978 -2.9361 22 7 3.8377 2.7543 0.0011 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 6.0967 -0.2682 0.0020 29 1 7.0732 2.0168 0.0015 30 1 5.0404 5.0091 0.6051 31 1 6.6922 4.3651 0.4462 32 1 5.6798 4.2575 -2.1080 33 1 9.4972 9.4736 -0.7342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -62.009101 kcal Electronic energy + Delta-G solvation = -20184.007522 eV Core-core repulsion = 16758.856116 eV Total energy + Delta-G solvation = -3425.151407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34889 -38.69142 -35.76348 -35.35309 -34.43481 -33.42191 -33.04300 -32.16943 -30.76725 -26.83751 -26.39088 -24.25296 -23.75623 -22.03628 -19.26704 -18.67198 -17.93766 -17.50339 -16.76341 -16.67849 -16.13397 -15.47429 -15.06486 -14.77686 -14.49157 -14.06386 -13.91148 -13.39889 -13.32369 -12.97350 -12.88208 -12.70527 -12.51866 -11.87456 -11.56249 -11.36892 -11.22165 -11.14155 -10.91416 -10.71498 -10.61829 -10.48754 -9.86698 -9.31499 -9.27662 -9.21719 -9.11716 -8.66767 -6.82045 -5.36744 0.80543 0.93885 2.06159 2.37408 3.08126 3.19105 3.28392 3.62349 3.86355 3.95735 4.25411 4.35231 4.46969 4.59198 4.71737 4.75941 4.94931 5.05996 5.08169 5.29573 5.38243 5.46044 5.53747 5.73052 5.77963 5.83388 6.05026 6.08459 6.43232 6.67814 7.04545 7.45183 7.60567 7.98869 8.17050 8.68847 10.29937 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.033025 B = 0.003923 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.641651 B = 7135.396115 C = 7663.822115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.072 3.928 3 O -0.289 6.289 4 C 0.499 3.501 5 N -0.572 5.572 6 C 0.183 3.817 7 C -0.252 4.252 8 C 0.214 3.786 9 C 0.174 3.826 10 N -1.117 6.117 11 S 2.677 3.323 12 O -1.005 7.005 13 O -1.006 7.006 14 C -1.016 5.016 15 H 0.123 0.877 16 C 0.154 3.846 17 N -0.823 5.823 18 Si 0.802 3.198 19 H -0.245 1.245 20 H -0.255 1.255 21 H -0.220 1.220 22 N -0.509 5.509 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.406 0.594 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -17.581 2.810 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 O -0.191 6.191 4 C 0.196 3.804 5 N -0.302 5.302 6 C 0.018 3.982 7 C -0.275 4.275 8 C 0.065 3.935 9 C 0.047 3.953 10 N -0.872 5.872 11 S 2.778 3.222 12 O -0.995 6.995 13 O -0.995 6.995 14 C -1.150 5.150 15 H 0.141 0.859 16 C -0.066 4.066 17 N -0.452 5.452 18 Si 0.622 3.378 19 H -0.169 1.169 20 H -0.179 1.179 21 H -0.142 1.142 22 N -0.235 5.235 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.191 0.809 29 H 0.176 0.824 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.846 -16.757 2.603 19.610 hybrid contribution 1.327 0.057 -0.271 1.356 sum -8.519 -16.700 2.332 18.892 Atomic orbital electron populations 1.21835 0.92528 1.02978 1.03748 1.22712 0.94976 0.79994 1.02747 1.86104 1.14846 1.31172 1.86969 1.20657 0.85491 0.85202 0.89057 1.68051 1.06915 1.33998 1.21258 1.22967 0.89494 0.97377 0.88327 1.22743 1.03367 0.93847 1.07560 1.21724 0.86848 0.97043 0.87854 1.20090 1.01392 0.88592 0.85270 1.55496 1.92298 1.28515 1.10926 1.01402 0.76817 0.70345 0.73626 1.93483 1.89452 1.83769 1.32806 1.93419 1.64726 1.71305 1.70095 1.30429 1.24165 1.04270 1.56134 0.85946 1.24413 0.94258 0.97465 0.90468 1.69982 1.16730 1.20506 1.37959 0.87858 0.82721 0.84448 0.82815 1.16907 1.17931 1.14202 1.67464 1.15671 1.22117 1.18212 0.91382 0.90017 0.91408 0.91316 0.91316 0.80909 0.82448 0.87954 0.88871 0.76238 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.07 0.69 6.01 37.16 0.22 0.92 16 3 O -0.29 -4.08 10.19 -18.09 -0.18 -4.26 16 4 C 0.50 7.49 8.49 -91.25 -0.77 6.71 16 5 N -0.57 -7.22 9.23 -14.73 -0.14 -7.35 16 6 C 0.18 1.86 11.30 -17.21 -0.19 1.66 16 7 C -0.25 -2.80 9.83 -39.32 -0.39 -3.19 16 8 C 0.21 3.14 6.22 -82.26 -0.51 2.63 16 9 C 0.17 2.84 6.57 -5.20 -0.03 2.80 16 10 N -1.12 -21.04 5.99 -11.66 -0.07 -21.11 16 11 S 2.68 65.70 4.24 -107.50 -0.46 65.25 16 12 O -1.00 -26.75 16.02 -57.17 -0.92 -27.67 16 13 O -1.01 -26.72 16.30 -57.17 -0.93 -27.65 16 14 C -1.02 -27.35 10.26 30.60 0.31 -27.03 16 15 H 0.12 3.24 8.06 -52.49 -0.42 2.82 16 16 C 0.15 4.33 5.47 -17.82 -0.10 4.23 16 17 N -0.82 -23.29 13.96 55.43 0.77 -22.51 16 18 Si 0.80 20.41 26.54 -169.99 -4.51 15.90 16 19 H -0.25 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.22 -5.73 5.61 56.52 0.32 -5.41 16 22 N -0.51 -8.47 10.40 -10.95 -0.11 -8.59 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.10 1.78 7.75 -51.93 -0.40 1.38 16 31 H 0.09 1.31 8.06 -51.92 -0.42 0.89 16 32 H 0.41 6.77 8.65 -34.47 -0.30 6.47 16 33 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -34.83 304.67 -6.75 -41.58 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.72 Total: 3.82 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.08 Total: -12.00 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.45 Total: -59.57 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -2.03 Total: -59.58 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.51 Total: 15.90 kcal Atomic # 16 Polarization: 65.70 SS G_CDS: -0.46 Total: 65.25 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.83 -6.75 -41.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.427 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds