Wall clock time and date at job start Wed Apr 15 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47229 * 2 1 4 4 C 1.35465 * 116.99959 * 179.97438 * 3 2 1 5 5 N 1.32327 * 119.19263 * 359.97438 * 4 3 2 6 6 C 1.32283 * 120.75830 * 179.97438 * 5 4 3 7 7 C 1.38624 * 119.17257 * 0.02562 * 6 5 4 8 8 C 1.38569 * 118.52140 * 0.27632 * 7 6 5 9 9 C 1.50698 * 120.41583 * 179.72329 * 8 7 6 10 10 N 1.46499 * 109.47326 * 94.99224 * 9 8 7 11 11 S 1.65598 * 120.00367 * 165.00000 * 10 9 8 12 12 O 1.42097 * 106.40424 * 178.54385 * 11 10 9 13 13 O 1.42096 * 106.40087 * 311.46897 * 11 10 9 14 14 C 1.76200 * 107.21409 * 65.00405 * 11 10 9 15 15 H 1.08000 * 120.00397 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99918 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00031 * 180.02562 * 16 14 11 18 18 Si 1.86793 * 120.00040 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47006 * 90.00422 * 18 16 14 20 20 H 1.48504 * 109.47412 * 210.00180 * 18 16 14 21 21 H 1.48500 * 109.47220 * 330.00610 * 18 16 14 22 22 N 1.32307 * 119.19260 * 180.02562 * 4 3 2 23 23 H 1.08999 * 109.47410 * 59.99841 * 1 2 3 24 24 H 1.08999 * 109.47656 * 180.02562 * 1 2 3 25 25 H 1.09012 * 109.47099 * 300.00133 * 1 2 3 26 26 H 1.08996 * 109.46768 * 239.99988 * 2 1 3 27 27 H 1.09005 * 109.46757 * 119.99953 * 2 1 3 28 28 H 1.08001 * 120.41739 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.73663 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47599 * 214.99893 * 9 8 7 31 31 H 1.09007 * 109.46691 * 334.99873 * 9 8 7 32 32 H 0.97011 * 119.99896 * 345.00883 * 10 9 8 33 33 H 0.97000 * 120.00053 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3493 1.5247 0.0005 5 7 4.1405 0.4640 0.0015 6 6 5.4561 0.6014 0.0016 7 6 6.0025 1.8754 0.0011 8 6 5.1443 2.9633 0.0065 9 6 5.6921 4.3672 0.0124 10 7 5.7569 4.8720 -1.3613 11 16 5.9616 6.4916 -1.6396 12 8 6.0179 6.6524 -3.0503 13 8 5.0161 7.1625 -0.8180 14 6 7.5538 6.9292 -1.0250 15 1 8.1829 6.1776 -0.5713 16 6 7.9968 8.2312 -1.1231 17 7 9.1855 8.5577 -0.6648 18 14 6.9091 9.5310 -1.9084 19 1 6.0593 10.1609 -0.8661 20 1 7.7591 10.5678 -2.5471 21 1 6.0442 8.8978 -2.9361 22 7 3.8377 2.7543 0.0011 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 6.0967 -0.2682 0.0020 29 1 7.0732 2.0168 0.0015 30 1 5.0404 5.0091 0.6051 31 1 6.6922 4.3651 0.4462 32 1 5.6798 4.2575 -2.1080 33 1 9.4972 9.4736 -0.7342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:05 Heat of formation + Delta-G solvation = -93.423298 kcal Electronic energy + Delta-G solvation = -20185.369744 eV Core-core repulsion = 16758.856116 eV Total energy + Delta-G solvation = -3426.513628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.32653 -39.63715 -37.71866 -36.72489 -36.49450 -35.16213 -34.51001 -33.06482 -31.65418 -28.56146 -27.98821 -25.16803 -24.66462 -22.98074 -21.16117 -19.71590 -19.51721 -18.92802 -18.55659 -17.68124 -17.51757 -16.94053 -16.51311 -15.85597 -15.70559 -15.47562 -15.27356 -15.01242 -14.87466 -14.56700 -14.10839 -13.51461 -13.44852 -13.42930 -13.27511 -12.88498 -12.70559 -12.55824 -12.55239 -12.14772 -12.04303 -11.86916 -11.65457 -11.31284 -11.22928 -10.38126 -10.27468 -10.05176 -8.94183 -7.49388 -0.29065 0.02324 0.24479 1.07776 1.17005 1.24783 1.47451 1.91890 2.42615 2.48421 2.78179 2.95429 3.23398 3.35554 3.56999 3.98739 4.04439 4.09036 4.18500 4.27788 4.39520 4.47840 4.51115 4.75024 4.79902 4.84373 4.91013 5.13201 5.22962 5.40984 5.72449 6.04923 6.14225 6.15400 6.56930 7.00323 8.22527 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.033025 B = 0.003923 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.641651 B = 7135.396115 C = 7663.822115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.066 3.934 3 O -0.313 6.313 4 C 0.482 3.518 5 N -0.569 5.569 6 C 0.192 3.808 7 C -0.236 4.236 8 C 0.191 3.809 9 C 0.167 3.833 10 N -1.104 6.104 11 S 2.698 3.302 12 O -1.028 7.028 13 O -1.030 7.030 14 C -1.029 5.029 15 H 0.120 0.880 16 C 0.113 3.887 17 N -0.849 5.849 18 Si 0.819 3.181 19 H -0.241 1.241 20 H -0.221 1.221 21 H -0.232 1.232 22 N -0.552 5.552 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.224 0.776 29 H 0.190 0.810 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.418 0.582 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -19.496 2.805 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.008 4.008 3 O -0.216 6.216 4 C 0.179 3.821 5 N -0.299 5.299 6 C 0.027 3.973 7 C -0.259 4.259 8 C 0.045 3.955 9 C 0.041 3.959 10 N -0.864 5.864 11 S 2.798 3.202 12 O -1.018 7.018 13 O -1.019 7.019 14 C -1.163 5.163 15 H 0.138 0.862 16 C -0.104 4.104 17 N -0.479 5.479 18 Si 0.636 3.364 19 H -0.165 1.165 20 H -0.143 1.143 21 H -0.155 1.155 22 N -0.279 5.279 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.240 0.760 29 H 0.207 0.793 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.252 0.748 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.408 -18.655 2.595 21.053 hybrid contribution 1.199 0.485 -0.221 1.311 sum -8.209 -18.170 2.374 20.080 Atomic orbital electron populations 1.21874 0.90852 1.04638 1.03233 1.22994 0.96261 0.78424 1.03164 1.86081 1.14880 1.33609 1.87007 1.20792 0.86087 0.85285 0.89911 1.68175 1.07969 1.32869 1.20915 1.23840 0.88960 0.98623 0.85844 1.23069 1.04429 0.93042 1.05333 1.21519 0.86997 0.96879 0.90116 1.20273 1.02595 0.89735 0.83314 1.54947 1.91828 1.26769 1.12829 1.00542 0.75605 0.71474 0.72575 1.93443 1.89446 1.85026 1.33872 1.93387 1.64875 1.73092 1.70561 1.30836 1.25359 1.04262 1.55804 0.86209 1.25047 0.95217 0.99103 0.91082 1.69990 1.17463 1.21657 1.38831 0.87582 0.82321 0.84056 0.82418 1.16454 1.14308 1.15461 1.67286 1.17036 1.23729 1.19846 0.91980 0.87197 0.91803 0.90933 0.90710 0.75987 0.79315 0.89789 0.86454 0.74787 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.07 1.23 6.01 71.98 0.43 1.66 16 3 O -0.31 -8.85 10.19 -87.63 -0.89 -9.74 16 4 C 0.48 14.20 8.49 180.57 1.53 15.73 16 5 N -0.57 -13.11 9.23 -313.45 -2.89 -16.00 16 6 C 0.19 3.17 11.30 84.72 0.96 4.13 16 7 C -0.24 -4.50 9.83 22.44 0.22 -4.28 16 8 C 0.19 5.40 6.22 42.56 0.26 5.67 16 9 C 0.17 5.36 6.57 85.63 0.56 5.92 16 10 N -1.10 -40.95 5.99 -190.79 -1.14 -42.10 16 11 S 2.70 132.13 4.24 -56.49 -0.24 131.89 16 12 O -1.03 -54.53 16.02 -128.00 -2.05 -56.58 16 13 O -1.03 -55.03 16.30 -128.00 -2.09 -57.12 16 14 C -1.03 -55.29 10.26 67.73 0.69 -54.60 16 15 H 0.12 6.31 8.06 -2.91 -0.02 6.29 16 16 C 0.11 6.32 5.47 84.65 0.46 6.78 16 17 N -0.85 -47.71 13.96 21.45 0.30 -47.41 16 18 Si 0.82 40.69 26.54 68.60 1.82 42.51 16 19 H -0.24 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.22 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.23 -11.96 5.61 99.48 0.56 -11.40 16 22 N -0.55 -18.34 10.40 -301.51 -3.14 -21.48 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.07 1.26 8.09 -2.38 -0.02 1.24 16 28 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.08 2.98 7.75 -2.39 -0.02 2.96 16 31 H 0.12 3.13 8.06 -2.38 -0.02 3.11 16 32 H 0.42 13.56 8.65 -96.73 -0.84 12.73 16 33 H 0.29 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -75.56 304.67 -4.29 -79.85 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.16 Total: 16.42 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.87 Total: -20.25 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.87 Total: -126.99 kcal Atomic # 8 Polarization: -118.41 SS G_CDS: -5.03 Total: -123.44 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.82 Total: 42.51 kcal Atomic # 16 Polarization: 132.13 SS G_CDS: -0.24 Total: 131.89 kcal Total: -75.56 -4.29 -79.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.569 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds