Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47326 * 2 1 4 4 C 1.35519 * 117.00104 * 180.02562 * 3 2 1 5 5 C 1.39417 * 120.51202 * 180.02562 * 4 3 2 6 6 C 1.38188 * 118.34829 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.40918 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46949 * 95.00469 * 7 6 5 9 9 S 1.65600 * 120.00242 * 164.99842 * 8 7 6 10 10 O 1.42096 * 106.40049 * 178.53837 * 9 8 7 11 11 O 1.42102 * 106.40131 * 311.46158 * 9 8 7 12 12 C 1.76201 * 107.21434 * 65.00002 * 9 8 7 13 13 H 1.07998 * 120.00224 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99647 * 179.97438 * 12 9 8 15 15 N 1.31519 * 120.00135 * 0.02562 * 14 12 9 16 16 Si 1.86808 * 119.99923 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47086 * 90.00394 * 16 14 12 18 18 H 1.48496 * 109.47074 * 210.00322 * 16 14 12 19 19 H 1.48505 * 109.46857 * 330.00376 * 16 14 12 20 20 N 1.32517 * 119.18017 * 0.25430 * 6 5 4 21 21 C 1.31755 * 120.96260 * 359.48844 * 20 6 5 22 22 N 1.31795 * 121.81488 * 0.51854 * 21 20 6 23 23 H 1.09003 * 109.46832 * 59.99907 * 1 2 3 24 24 H 1.08995 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47130 * 300.00429 * 1 2 3 26 26 H 1.09005 * 109.47244 * 240.00303 * 2 1 3 27 27 H 1.08999 * 109.47376 * 120.00577 * 2 1 3 28 28 H 1.08004 * 120.82657 * 0.04397 * 5 4 3 29 29 H 1.09000 * 109.47318 * 214.99856 * 7 6 5 30 30 H 1.09000 * 109.47161 * 335.00486 * 7 6 5 31 31 H 0.97004 * 119.99709 * 345.00016 * 8 7 6 32 32 H 0.96997 * 119.99750 * 179.97438 * 15 14 12 33 33 H 1.08005 * 119.09573 * 180.24785 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3499 1.5248 -0.0005 5 6 3.8943 2.8083 0.0000 6 6 5.2701 2.9375 -0.0012 7 6 5.9081 4.3028 -0.0013 8 7 6.2251 4.6938 1.3746 9 16 7.2553 5.9586 1.6595 10 8 7.3290 6.1059 3.0709 11 8 8.3956 5.7398 0.8402 12 6 6.4749 7.4149 1.0473 13 1 5.4981 7.3529 0.5909 14 6 7.1109 8.6337 1.1519 15 7 8.3003 8.7093 1.7082 16 14 6.2839 10.1776 0.5022 17 1 5.4664 10.7918 1.5791 18 1 7.3196 11.1433 0.0552 19 1 5.4081 9.8250 -0.6441 20 7 6.0215 1.8460 -0.0078 21 6 5.4753 0.6470 -0.0032 22 7 4.1681 0.4790 -0.0021 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.2566 3.6800 0.0015 29 1 6.8241 4.2759 -0.5915 30 1 5.2177 5.0265 -0.4347 31 1 5.8316 4.2117 2.1186 32 1 8.7478 9.5667 1.7814 33 1 6.1164 -0.2222 -0.0048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193004987.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = -84.801686 kcal Electronic energy + Delta-G solvation = -20068.657345 eV Core-core repulsion = 16642.517578 eV Total energy + Delta-G solvation = -3426.139767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32062 -38.84394 -35.51569 -35.07387 -33.94887 -33.11718 -32.94722 -32.24463 -30.87656 -26.57807 -26.13615 -24.46486 -23.66606 -22.05432 -19.13698 -18.65792 -17.83881 -17.35107 -16.65624 -16.18022 -15.64204 -15.48153 -15.31301 -14.92959 -14.45805 -14.22874 -14.06046 -13.38395 -13.11516 -13.05359 -12.93446 -12.50044 -11.99533 -11.97589 -11.31757 -11.25800 -11.21380 -10.86659 -10.70307 -10.60221 -10.28525 -10.20620 -10.13744 -9.43728 -9.25008 -9.23188 -9.08309 -8.55931 -6.70481 -5.33123 0.79777 1.02630 2.32764 2.61790 3.07184 3.14183 3.19868 3.67874 3.88721 4.00183 4.07621 4.55771 4.64546 4.66406 4.73343 4.78572 4.99495 5.04103 5.12385 5.33414 5.46312 5.47888 5.67021 5.72202 5.82330 5.96065 6.15039 6.40950 6.73774 6.76469 7.00540 7.31365 7.79809 7.95425 8.01028 8.88361 10.23808 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.003872 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.206432 B = 7229.641095 C = 7920.021686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.301 6.301 4 C 0.361 3.639 5 C -0.230 4.230 6 C 0.202 3.798 7 C 0.176 3.824 8 N -1.129 6.129 9 S 2.716 3.284 10 O -1.003 7.003 11 O -1.001 7.001 12 C -1.021 5.021 13 H 0.103 0.897 14 C 0.133 3.867 15 N -0.844 5.844 16 Si 0.921 3.079 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.262 1.262 20 N -0.524 5.524 21 C 0.332 3.668 22 N -0.581 5.581 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.403 0.597 32 H 0.291 0.709 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 -14.323 -5.204 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.206 6.206 4 C 0.174 3.826 5 C -0.254 4.254 6 C 0.057 3.943 7 C 0.048 3.952 8 N -0.883 5.883 9 S 2.815 3.185 10 O -0.994 6.994 11 O -0.991 6.991 12 C -1.155 5.155 13 H 0.121 0.879 14 C -0.085 4.085 15 N -0.474 5.474 16 Si 0.745 3.255 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.186 1.186 20 N -0.243 5.243 21 C 0.044 3.956 22 N -0.312 5.312 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.233 0.767 32 H 0.102 0.898 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.699 -14.798 -4.906 19.491 hybrid contribution -1.629 1.265 -0.251 2.077 sum -13.328 -13.533 -5.157 19.682 Atomic orbital electron populations 1.21830 0.92759 1.03002 1.03522 1.22692 0.94962 0.80681 1.02769 1.86247 1.16355 1.31142 1.86816 1.20045 0.84314 0.90030 0.88189 1.21900 0.96578 0.97046 1.09834 1.21744 0.89056 0.95537 0.87949 1.19995 1.01344 0.88110 0.85723 1.56022 1.68992 1.52853 1.10437 1.00471 0.72261 0.72603 0.73126 1.93381 1.86495 1.86423 1.33054 1.93369 1.49130 1.86139 1.70461 1.30538 1.16951 1.11924 1.56043 0.87854 1.24750 0.93301 1.00224 0.90271 1.69899 1.12503 1.29052 1.35933 0.86152 0.79574 0.79983 0.79765 1.19243 1.20000 1.18629 1.68357 1.41055 0.98764 1.16106 1.24755 0.87174 0.95017 0.88691 1.68101 1.07083 1.34227 1.21739 0.91537 0.90167 0.91481 0.91370 0.91339 0.82514 0.88008 0.89688 0.76699 0.89847 0.78306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.56 6.06 37.16 0.23 0.78 16 3 O -0.30 -3.51 10.13 -18.25 -0.18 -3.70 16 4 C 0.36 4.67 7.53 -16.70 -0.13 4.54 16 5 C -0.23 -3.02 9.79 -39.16 -0.38 -3.40 16 6 C 0.20 3.00 6.21 -82.31 -0.51 2.49 16 7 C 0.18 2.94 6.57 -5.19 -0.03 2.90 16 8 N -1.13 -22.07 5.99 -11.65 -0.07 -22.14 16 9 S 2.72 70.68 5.02 -107.50 -0.54 70.14 16 10 O -1.00 -29.15 18.02 -57.17 -1.03 -30.18 16 11 O -1.00 -28.84 17.49 -57.17 -1.00 -29.84 16 12 C -1.02 -27.26 9.72 30.60 0.30 -26.96 16 13 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 14 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 15 N -0.84 -24.58 13.19 55.43 0.73 -23.84 16 16 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 20 N -0.52 -7.85 10.37 -10.86 -0.11 -7.96 16 21 C 0.33 4.08 12.28 -92.19 -1.13 2.95 16 22 N -0.58 -7.29 9.39 -14.64 -0.14 -7.43 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 28 H 0.16 1.78 8.06 -52.48 -0.42 1.35 16 29 H 0.10 1.80 7.75 -51.93 -0.40 1.39 16 30 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 31 H 0.40 7.07 8.64 -34.47 -0.30 6.77 16 32 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -35.76 311.72 -7.67 -43.42 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.62 Total: 5.42 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.38 Total: -13.74 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.41 Total: -61.38 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -2.21 Total: -63.71 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 70.68 SS G_CDS: -0.54 Total: 70.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.76 -7.67 -43.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193004987.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.379 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds