Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47326 * 2 1 4 4 C 1.35519 * 117.00104 * 180.02562 * 3 2 1 5 5 C 1.39417 * 120.51202 * 180.02562 * 4 3 2 6 6 C 1.38188 * 118.34829 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.40918 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46949 * 95.00469 * 7 6 5 9 9 S 1.65600 * 120.00242 * 164.99842 * 8 7 6 10 10 O 1.42096 * 106.40049 * 178.53837 * 9 8 7 11 11 O 1.42102 * 106.40131 * 311.46158 * 9 8 7 12 12 C 1.76201 * 107.21434 * 65.00002 * 9 8 7 13 13 H 1.07998 * 120.00224 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99647 * 179.97438 * 12 9 8 15 15 N 1.31519 * 120.00135 * 0.02562 * 14 12 9 16 16 Si 1.86808 * 119.99923 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47086 * 90.00394 * 16 14 12 18 18 H 1.48496 * 109.47074 * 210.00322 * 16 14 12 19 19 H 1.48505 * 109.46857 * 330.00376 * 16 14 12 20 20 N 1.32517 * 119.18017 * 0.25430 * 6 5 4 21 21 C 1.31755 * 120.96260 * 359.48844 * 20 6 5 22 22 N 1.31795 * 121.81488 * 0.51854 * 21 20 6 23 23 H 1.09003 * 109.46832 * 59.99907 * 1 2 3 24 24 H 1.08995 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47130 * 300.00429 * 1 2 3 26 26 H 1.09005 * 109.47244 * 240.00303 * 2 1 3 27 27 H 1.08999 * 109.47376 * 120.00577 * 2 1 3 28 28 H 1.08004 * 120.82657 * 0.04397 * 5 4 3 29 29 H 1.09000 * 109.47318 * 214.99856 * 7 6 5 30 30 H 1.09000 * 109.47161 * 335.00486 * 7 6 5 31 31 H 0.97004 * 119.99709 * 345.00016 * 8 7 6 32 32 H 0.96997 * 119.99750 * 179.97438 * 15 14 12 33 33 H 1.08005 * 119.09573 * 180.24785 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3499 1.5248 -0.0005 5 6 3.8943 2.8083 0.0000 6 6 5.2701 2.9375 -0.0012 7 6 5.9081 4.3028 -0.0013 8 7 6.2251 4.6938 1.3746 9 16 7.2553 5.9586 1.6595 10 8 7.3290 6.1059 3.0709 11 8 8.3956 5.7398 0.8402 12 6 6.4749 7.4149 1.0473 13 1 5.4981 7.3529 0.5909 14 6 7.1109 8.6337 1.1519 15 7 8.3003 8.7093 1.7082 16 14 6.2839 10.1776 0.5022 17 1 5.4664 10.7918 1.5791 18 1 7.3196 11.1433 0.0552 19 1 5.4081 9.8250 -0.6441 20 7 6.0215 1.8460 -0.0078 21 6 5.4753 0.6470 -0.0032 22 7 4.1681 0.4790 -0.0021 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.2566 3.6800 0.0015 29 1 6.8241 4.2759 -0.5915 30 1 5.2177 5.0265 -0.4347 31 1 5.8316 4.2117 2.1186 32 1 8.7478 9.5667 1.7814 33 1 6.1164 -0.2222 -0.0048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193004987.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -114.893723 kcal Electronic energy + Delta-G solvation = -20069.962234 eV Core-core repulsion = 16642.517578 eV Total energy + Delta-G solvation = -3427.444656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31891 -39.75227 -37.43372 -36.67702 -36.12474 -35.14488 -33.96824 -33.28139 -31.73410 -28.23213 -27.83530 -25.44712 -24.49676 -23.02387 -21.07256 -19.67468 -19.42645 -18.81819 -18.10891 -17.49547 -17.13690 -16.73891 -16.48057 -16.36905 -15.89026 -15.56806 -15.31737 -15.03164 -14.43427 -14.07060 -13.93056 -13.71443 -13.42611 -13.23496 -12.97400 -12.65993 -12.54190 -12.48891 -12.41076 -12.25617 -11.99046 -11.82378 -11.30840 -11.21237 -11.00802 -10.49464 -10.28708 -10.20365 -8.72195 -7.45347 -0.28520 -0.00425 0.42305 1.39447 1.39497 1.55757 1.74923 2.24452 2.61149 2.63296 2.87815 3.04201 3.08182 3.56939 3.74348 3.94885 4.05709 4.05915 4.14884 4.41945 4.48157 4.50065 4.56642 4.64717 4.79434 4.93447 4.96806 5.15202 5.23105 5.32576 5.78806 5.93818 6.07542 6.24253 6.81900 7.00286 8.24540 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.003872 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.206432 B = 7229.641095 C = 7920.021686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.307 6.307 4 C 0.357 3.643 5 C -0.226 4.226 6 C 0.190 3.810 7 C 0.170 3.830 8 N -1.115 6.115 9 S 2.722 3.278 10 O -1.043 7.043 11 O -1.039 7.039 12 C -1.036 5.036 13 H 0.129 0.871 14 C 0.069 3.931 15 N -0.896 5.896 16 Si 0.993 3.007 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.243 1.243 20 N -0.553 5.553 21 C 0.333 3.667 22 N -0.579 5.579 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.174 0.826 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.413 0.587 32 H 0.298 0.702 33 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.524 -14.595 -6.251 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.211 6.211 4 C 0.170 3.830 5 C -0.250 4.250 6 C 0.046 3.954 7 C 0.043 3.957 8 N -0.873 5.873 9 S 2.823 3.177 10 O -1.033 7.033 11 O -1.029 7.029 12 C -1.170 5.170 13 H 0.147 0.853 14 C -0.144 4.144 15 N -0.527 5.527 16 Si 0.811 3.189 17 H -0.181 1.181 18 H -0.191 1.191 19 H -0.165 1.165 20 N -0.272 5.272 21 C 0.045 3.955 22 N -0.310 5.310 23 H 0.085 0.915 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.192 0.808 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.246 0.754 32 H 0.108 0.892 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.134 -15.109 -5.945 21.527 hybrid contribution -0.936 1.174 0.064 1.503 sum -15.071 -13.935 -5.881 21.351 Atomic orbital electron populations 1.21853 0.90809 1.04457 1.03456 1.22957 0.96469 0.79379 1.02885 1.86256 1.15520 1.32939 1.86415 1.20206 0.84991 0.90074 0.87736 1.21984 0.95935 0.97986 1.09105 1.21413 0.89711 0.94627 0.89609 1.20178 1.01581 0.90322 0.83591 1.55341 1.68050 1.51522 1.12401 0.99895 0.72441 0.73399 0.71949 1.93317 1.87379 1.87393 1.35243 1.93315 1.51685 1.86933 1.70937 1.30875 1.18021 1.12128 1.55957 0.85300 1.26048 0.93790 1.04428 0.90149 1.70004 1.14490 1.30511 1.37694 0.85091 0.78846 0.75141 0.79842 1.18127 1.19105 1.16543 1.68326 1.42001 0.99655 1.17222 1.25399 0.87521 0.95117 0.87437 1.68195 1.07127 1.34088 1.21550 0.91457 0.87952 0.91652 0.91093 0.91357 0.80813 0.89537 0.87136 0.75415 0.89155 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.06 0.89 6.06 71.98 0.44 1.33 16 3 O -0.31 -6.57 10.13 -88.22 -0.89 -7.47 16 4 C 0.36 8.61 7.53 84.83 0.64 9.25 16 5 C -0.23 -5.56 9.79 22.54 0.22 -5.34 16 6 C 0.19 5.47 6.21 42.45 0.26 5.74 16 7 C 0.17 5.57 6.57 85.63 0.56 6.13 16 8 N -1.11 -43.49 5.99 -190.78 -1.14 -44.63 16 9 S 2.72 144.16 5.02 -56.49 -0.28 143.88 16 10 O -1.04 -62.22 18.02 -128.00 -2.31 -64.53 16 11 O -1.04 -61.63 17.49 -128.00 -2.24 -63.87 16 12 C -1.04 -54.81 9.72 67.73 0.66 -54.15 16 13 H 0.13 5.91 7.81 -2.91 -0.02 5.89 16 14 C 0.07 3.73 5.46 84.65 0.46 4.19 16 15 N -0.90 -52.93 13.19 21.45 0.28 -52.65 16 16 Si 0.99 40.07 29.54 68.60 2.03 42.09 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 18 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.24 -8.93 7.11 99.48 0.71 -8.23 16 20 N -0.55 -16.08 10.37 -188.29 -1.95 -18.03 16 21 C 0.33 7.65 12.28 180.90 2.22 9.87 16 22 N -0.58 -13.48 9.39 -312.90 -2.94 -16.42 16 23 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 27 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 29 H 0.09 3.10 7.75 -2.39 -0.02 3.08 16 30 H 0.11 3.01 8.06 -2.39 -0.02 2.99 16 31 H 0.41 14.42 8.64 -96.74 -0.84 13.58 16 32 H 0.30 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -77.83 311.72 -2.93 -80.76 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.31 Total: 24.64 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 6.20 Total: -23.78 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -5.75 Total: -131.73 kcal Atomic # 8 Polarization: -130.42 SS G_CDS: -5.44 Total: -135.86 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 144.16 SS G_CDS: -0.28 Total: 143.88 kcal Total: -77.83 -2.93 -80.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193004987.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.136 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds