Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86807 * 120.00035 * 2 1 4 4 H 1.48498 * 109.47191 * 270.00034 * 3 2 1 5 5 H 1.48497 * 109.46790 * 30.00294 * 3 2 1 6 6 H 1.48499 * 109.46754 * 150.00040 * 3 2 1 7 7 C 1.38791 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00450 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.76200 * 100.00103 * 180.02562 * 9 7 2 11 11 N 1.32021 * 118.62262 * 0.02562 * 10 9 7 12 12 C 1.34034 * 120.41423 * 179.97438 * 11 10 9 13 13 C 1.40207 * 121.92165 * 179.97438 * 12 11 10 14 14 C 1.36334 * 119.58392 * 180.02562 * 13 12 11 15 15 C 1.39183 * 121.01548 * 0.04395 * 14 13 12 16 16 C 1.36451 * 120.90063 * 359.95205 * 15 14 13 17 17 C 1.39851 * 119.52799 * 0.02952 * 16 15 14 18 18 C 1.41778 * 122.00428 * 179.97438 * 17 16 15 19 19 N 1.37861 * 120.84842 * 0.03731 * 18 17 16 20 20 C 1.46503 * 120.00300 * 180.02562 * 19 18 17 21 21 C 1.52997 * 117.50216 * 223.62709 * 20 19 18 22 22 C 1.52994 * 117.49891 * 155.00194 * 20 19 18 23 23 N 1.32443 * 118.30788 * 180.02562 * 18 17 16 24 24 H 0.96999 * 120.00386 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.20926 * 0.02562 * 13 12 11 26 26 H 1.07996 * 119.49143 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.55510 * 179.97438 * 15 14 13 28 28 H 1.07998 * 120.23787 * 179.97438 * 16 15 14 29 29 H 0.97004 * 119.99922 * 0.02562 * 19 18 17 30 30 H 1.09000 * 115.54620 * 9.33408 * 20 19 18 31 31 H 1.09003 * 117.49368 * 359.97438 * 21 20 19 32 32 H 1.08997 * 117.50100 * 145.02254 * 21 20 19 33 33 H 1.09005 * 117.49877 * 214.98418 * 22 20 19 34 34 H 1.09004 * 117.50237 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4401 0.7000 7 6 2.0094 -1.2019 -0.0005 8 1 3.0895 -1.2020 -0.0001 9 16 1.1285 -2.7279 -0.0005 10 6 2.4782 -3.8605 -0.0005 11 7 3.7076 -3.3793 0.0000 12 6 4.7608 -4.2083 0.0005 13 6 6.0794 -3.7318 0.0005 14 6 7.1154 -4.6181 0.0006 15 6 6.8849 -5.9907 -0.0003 16 6 5.6142 -6.4879 -0.0003 17 6 4.5289 -5.6058 0.0000 18 6 3.1875 -6.0649 -0.0005 19 7 2.9019 -7.4136 -0.0005 20 6 1.5090 -7.8674 -0.0016 21 6 1.1408 -9.0202 0.9346 22 6 1.2188 -9.2558 -0.5752 23 7 2.2157 -5.1650 -0.0006 24 1 -0.4851 0.8400 0.0004 25 1 6.2733 -2.6693 0.0005 26 1 8.1304 -4.2494 0.0010 27 1 7.7231 -6.6716 -0.0007 28 1 5.4477 -7.5549 -0.0014 29 1 3.6233 -8.0621 0.0001 30 1 0.7616 -7.0904 -0.1618 31 1 1.9351 -9.4412 1.5510 32 1 0.1510 -9.0017 1.3906 33 1 0.2803 -9.3923 -1.1124 34 1 2.0644 -9.8318 -0.9513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009739958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = 90.172235 kcal Electronic energy + Delta-G solvation = -19220.911121 eV Core-core repulsion = 16245.500807 eV Total energy + Delta-G solvation = -2975.410314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.079 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55341 -38.01004 -36.85855 -34.55915 -32.70508 -31.44767 -30.57810 -29.21950 -25.69566 -24.16654 -23.83072 -22.47963 -21.87499 -21.10836 -19.12305 -17.71301 -17.41664 -16.88520 -15.75450 -15.18528 -14.92247 -14.77527 -14.60578 -14.30130 -13.87508 -13.56354 -13.00164 -12.71545 -12.47477 -11.97711 -11.83680 -11.68273 -11.50938 -11.14148 -11.12071 -11.06236 -10.53509 -10.46695 -10.28311 -9.70179 -9.39957 -8.94796 -8.85420 -8.69719 -8.26983 -7.59521 -6.72450 -6.47737 -4.16424 0.93838 1.32945 2.51763 2.78929 3.14632 3.18519 3.23568 3.32788 3.45386 3.85147 4.02140 4.62454 4.69931 4.80495 4.90740 4.91882 4.97395 5.00353 5.02403 5.19004 5.38377 5.39950 5.49236 5.60900 5.70283 5.76060 5.95594 5.98549 6.15401 6.36597 6.51212 6.71755 6.75207 7.06219 7.17894 7.43467 7.59071 8.03835 8.45402 9.00912 9.05455 10.59565 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.005490 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.192976 B = 5098.499955 C = 6873.453842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.074 3.926 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.112 0.888 9 S 0.182 5.818 10 C 0.310 3.690 11 N -0.554 5.554 12 C 0.214 3.786 13 C -0.122 4.122 14 C -0.078 4.078 15 C -0.170 4.170 16 C -0.058 4.058 17 C -0.229 4.229 18 C 0.474 3.526 19 N -0.679 5.679 20 C 0.099 3.901 21 C -0.199 4.199 22 C -0.196 4.196 23 N -0.579 5.579 24 H 0.275 0.725 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.406 0.594 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 -15.214 0.020 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.135 4.135 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.688 4.688 8 H 0.130 0.870 9 S 0.429 5.571 10 C -0.060 4.060 11 N -0.279 5.279 12 C 0.079 3.921 13 C -0.143 4.143 14 C -0.099 4.099 15 C -0.191 4.191 16 C -0.079 4.079 17 C -0.241 4.241 18 C 0.213 3.787 19 N -0.312 5.312 20 C -0.008 4.008 21 C -0.238 4.238 22 C -0.234 4.234 23 N -0.307 5.307 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.243 0.757 30 H 0.164 0.836 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.160 -14.289 0.020 15.192 hybrid contribution 2.836 0.076 0.018 2.838 sum 7.997 -14.213 0.038 16.308 Atomic orbital electron populations 1.69936 1.06227 1.28564 1.45915 1.25171 0.95110 0.99831 0.93399 0.85942 0.79647 0.80063 0.78669 1.19947 1.20698 1.19032 1.23624 0.98173 0.89877 1.57110 0.86976 1.83613 1.00039 0.94830 1.78592 1.25884 0.97169 0.91268 0.91658 1.69424 0.97625 1.35894 1.24988 1.18917 0.94168 0.87878 0.91118 1.20644 0.90036 1.00341 1.03306 1.20802 0.98662 0.93159 0.97268 1.20551 0.96344 0.95379 1.06799 1.20503 0.92321 0.97747 0.97285 1.18772 0.92906 0.96053 1.16388 1.18483 0.88409 0.85445 0.86381 1.43576 1.06645 1.02557 1.78390 1.21660 0.84929 0.91578 1.02625 1.23437 1.03465 1.03962 0.92913 1.23390 1.03630 0.99948 0.96475 1.67962 1.34316 1.01729 1.26718 0.91547 0.85057 0.86094 0.86496 0.86956 0.75687 0.83642 0.88871 0.88002 0.87915 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.54 13.22 55.49 0.73 -23.81 16 2 C 0.07 2.04 5.49 -17.47 -0.10 1.94 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -15.18 9.23 30.94 0.29 -14.89 16 8 H 0.11 3.21 6.48 -52.48 -0.34 2.87 16 9 S 0.18 4.78 21.82 -107.50 -2.35 2.43 16 10 C 0.31 7.61 7.83 -90.85 -0.71 6.90 16 11 N -0.55 -13.53 8.40 -11.50 -0.10 -13.62 16 12 C 0.21 4.44 6.61 -84.86 -0.56 3.88 16 13 C -0.12 -2.12 10.01 -39.53 -0.40 -2.52 16 14 C -0.08 -1.07 9.95 -39.92 -0.40 -1.46 16 15 C -0.17 -2.15 9.96 -39.88 -0.40 -2.55 16 16 C -0.06 -0.80 9.53 -39.62 -0.38 -1.17 16 17 C -0.23 -4.13 5.76 -106.64 -0.61 -4.74 16 18 C 0.47 8.66 7.55 -155.07 -1.17 7.49 16 19 N -0.68 -9.23 5.63 -53.49 -0.30 -9.53 16 20 C 0.10 1.24 6.47 -67.93 -0.44 0.80 16 21 C -0.20 -1.95 10.46 -26.73 -0.28 -2.23 16 22 C -0.20 -1.81 10.45 -26.73 -0.28 -2.09 16 23 N -0.58 -12.56 9.14 -12.39 -0.11 -12.68 16 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.11 1.15 6.57 -52.49 -0.34 0.81 16 29 H 0.41 4.28 7.07 -40.82 -0.29 3.99 16 30 H 0.15 2.16 7.36 -51.93 -0.38 1.77 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -31.48 310.92 -11.35 -42.83 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.45 Total: 4.19 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -5.43 Total: -10.65 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.22 Total: -59.64 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.35 Total: 2.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.48 -11.35 -42.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009739958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.002 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds