Wall clock time and date at job start Wed Apr 15 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 S 1.65605 * 119.99928 * 264.99900 * 12 2 1 14 14 O 1.42102 * 104.27620 * 181.07094 * 13 12 2 15 15 O 1.42098 * 104.27771 * 308.93307 * 13 12 2 16 16 C 1.81399 * 104.44709 * 65.00571 * 13 12 2 17 17 C 1.50703 * 109.47262 * 179.97438 * 16 13 12 18 18 C 1.38238 * 119.97307 * 269.72578 * 17 16 13 19 19 C 1.38204 * 120.02370 * 179.72035 * 18 17 16 20 20 C 1.38457 * 119.97434 * 0.57219 * 19 18 17 21 21 F 1.35099 * 120.02703 * 179.67895 * 20 19 18 22 22 C 1.38466 * 119.94570 * 359.70389 * 20 19 18 23 23 C 1.38194 * 119.97382 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00201 * 85.00286 * 12 2 1 29 29 H 1.09007 * 109.47102 * 299.99848 * 16 13 12 30 30 H 1.08999 * 109.47595 * 59.99606 * 16 13 12 31 31 H 1.07998 * 119.98859 * 359.97438 * 18 17 16 32 32 H 1.08000 * 120.01078 * 180.25244 * 19 18 17 33 33 H 1.07998 * 120.00931 * 179.97438 * 22 20 19 34 34 H 1.08009 * 119.98421 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1961 13 16 2.4122 0.1771 2.5505 14 8 2.8606 -0.8030 3.4766 15 8 3.2874 1.1906 2.0751 16 6 0.8407 0.8987 3.0985 17 6 1.0715 1.7212 4.3400 18 6 0.9649 1.1343 5.5871 19 6 1.1819 1.8862 6.7261 20 6 1.4946 3.2307 6.6183 21 9 1.7006 3.9683 7.7313 22 6 1.5955 3.8188 5.3688 23 6 1.3846 3.0633 4.2311 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1620 -3.4843 28 1 2.1110 -1.6562 1.1948 29 1 0.4386 1.5351 2.3102 30 1 0.1315 0.1007 3.3184 31 1 0.7159 0.0867 5.6711 32 1 1.1026 1.4265 7.7002 33 1 1.8390 4.8675 5.2835 34 1 1.4636 3.5218 3.2563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058268642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:19 Heat of formation + Delta-G solvation = -100.259067 kcal Electronic energy + Delta-G solvation = -20434.671493 eV Core-core repulsion = 16987.941482 eV Total energy + Delta-G solvation = -3446.730011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.078 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.06398 -39.31915 -36.64111 -35.58413 -35.40156 -32.80548 -32.23753 -31.34027 -28.38748 -27.13563 -25.27704 -23.26879 -21.92355 -20.99287 -18.85986 -17.83286 -17.57304 -16.62045 -16.50860 -16.16193 -15.74754 -15.40757 -15.26728 -14.74937 -14.21745 -13.85642 -13.68664 -13.58025 -12.82779 -12.71073 -12.43036 -12.24362 -12.11556 -11.80668 -11.62566 -11.51986 -11.20534 -11.14985 -11.00887 -10.80446 -10.65796 -10.42491 -10.12641 -9.31390 -9.28964 -8.81516 -8.58935 -8.31682 -6.18028 -4.24765 0.49036 1.03412 1.11005 3.25656 3.30221 3.30807 3.35762 3.40857 4.04894 4.12708 4.32650 4.38696 4.50304 4.66345 4.70448 5.07647 5.10714 5.15548 5.34311 5.49237 5.72653 5.83876 5.91595 6.01497 6.22596 6.25686 6.62694 6.66098 6.68092 6.88551 7.48281 7.58696 7.80823 7.93679 8.20230 8.77633 9.41438 10.88391 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.036886 B = 0.003931 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.914302 B = 7120.636402 C = 7368.686590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.101 6.101 13 S 2.607 3.393 14 O -0.975 6.975 15 O -0.951 6.951 16 C -0.596 4.596 17 C -0.092 4.092 18 C -0.079 4.079 19 C -0.152 4.152 20 C 0.098 3.902 21 F -0.140 7.140 22 C -0.150 4.150 23 C -0.077 4.077 24 H 0.037 0.963 25 H 0.012 0.988 26 H 0.096 0.904 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 2.755 14.052 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.861 5.861 13 S 2.698 3.302 14 O -0.965 6.965 15 O -0.941 6.941 16 C -0.721 4.721 17 C -0.094 4.094 18 C -0.098 4.098 19 C -0.171 4.171 20 C 0.079 3.921 21 F -0.119 7.119 22 C -0.169 4.169 23 C -0.096 4.096 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.243 0.757 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.569 3.194 14.305 14.880 hybrid contribution -0.513 -0.603 -0.798 1.124 sum -3.082 2.592 13.507 14.094 Atomic orbital electron populations 1.22418 0.98705 1.00316 1.00955 1.18659 0.90572 0.93335 0.81577 0.93025 1.21164 1.31928 1.13196 0.89752 0.91742 1.24910 0.94831 0.95016 0.99115 1.69832 1.36266 1.22588 1.24130 0.86483 0.79362 0.79553 0.81599 1.20165 1.21154 1.20064 1.55602 1.83847 1.19200 1.27445 1.05016 0.76559 0.74899 0.73770 1.93531 1.79581 1.58735 1.64660 1.93591 1.59948 1.61340 1.79211 1.29955 1.25982 1.11493 1.04691 1.19170 1.02830 0.94319 0.93108 1.21061 0.97458 1.00542 0.90779 1.21132 1.03245 0.92433 1.00283 1.17779 1.01893 0.89843 0.82621 1.91498 1.92490 1.76871 1.50996 1.21168 1.03411 1.01532 0.90769 1.21148 0.96302 0.92779 0.99326 0.94368 0.96926 0.88546 0.92478 0.75723 0.83370 0.84056 0.84127 0.84247 0.84126 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.26 37.16 0.34 -3.08 16 2 C 0.26 6.01 2.79 -69.08 -0.19 5.82 16 3 H 0.05 1.29 7.48 -51.93 -0.39 0.90 16 4 C -0.52 -13.40 8.76 -34.44 -0.30 -13.71 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.66 11.32 55.43 0.63 -23.03 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -1.10 -21.16 5.35 -5.88 -0.03 -21.20 16 13 S 2.61 46.16 5.42 -107.50 -0.58 45.58 16 14 O -0.97 -18.53 18.08 -57.54 -1.04 -19.57 16 15 O -0.95 -20.29 17.39 -57.54 -1.00 -21.29 16 16 C -0.60 -8.03 5.35 36.01 0.19 -7.84 16 17 C -0.09 -1.21 5.14 -104.62 -0.54 -1.75 16 18 C -0.08 -0.94 9.70 -39.59 -0.38 -1.32 16 19 C -0.15 -1.67 10.03 -39.51 -0.40 -2.07 16 20 C 0.10 1.15 7.30 -39.42 -0.29 0.87 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 23 C -0.08 -0.96 9.70 -39.60 -0.38 -1.35 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.01 0.20 5.78 -51.93 -0.30 -0.10 16 26 H 0.10 2.25 6.07 -51.93 -0.32 1.94 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.41 7.27 8.79 -34.47 -0.30 6.96 16 29 H 0.15 1.92 6.72 -51.92 -0.35 1.58 16 30 H 0.14 1.54 8.08 -51.92 -0.42 1.12 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -30.96 308.46 -8.53 -39.49 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.73 Total: 6.65 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.44 Total: -24.97 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.60 Total: -44.22 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.04 Total: -40.86 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 46.16 SS G_CDS: -0.58 Total: 45.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.96 -8.53 -39.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058268642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.768 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds