Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30095 * 126.16832 * 2 1 4 4 O 1.21287 * 110.50163 * 180.02562 * 3 2 1 5 5 C 1.34282 * 109.67021 * 359.97438 * 4 3 2 6 6 C 1.47550 * 126.68983 * 179.97438 * 5 4 3 7 7 C 1.46402 * 120.61308 * 180.02562 * 6 5 4 8 8 C 1.34380 * 119.71644 * 179.97438 * 7 6 5 9 9 N 1.37472 * 121.09971 * 0.02562 * 8 7 6 10 10 C 1.37992 * 120.87050 * 359.97438 * 9 8 7 11 11 C 1.38505 * 120.61532 * 0.02562 * 6 5 4 12 12 N 1.32228 * 108.34492 * 180.02562 * 10 9 8 13 13 N 1.40117 * 107.74326 * 0.02562 * 12 10 9 14 14 C 1.36795 * 126.20177 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00435 * 180.02562 * 14 13 12 16 16 C 1.38668 * 119.99730 * 0.02842 * 14 13 12 17 17 N 1.31524 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47383 * 89.99704 * 18 16 14 20 20 H 1.48497 * 109.46908 * 209.99671 * 18 16 14 21 21 H 1.48498 * 109.46873 * 329.99754 * 18 16 14 22 22 C 1.34735 * 107.60779 * 0.02562 * 13 12 10 23 23 O 1.21698 * 125.95688 * 179.73990 * 22 13 12 24 24 N 1.32248 * 106.62163 * 0.23941 * 5 4 3 25 25 H 1.08995 * 109.47224 * 89.97643 * 1 2 3 26 26 H 1.08998 * 109.46945 * 209.98405 * 1 2 3 27 27 H 1.09003 * 109.47197 * 329.97612 * 1 2 3 28 28 H 1.08003 * 120.14191 * 359.96120 * 7 6 5 29 29 H 1.08009 * 119.45126 * 180.02562 * 8 7 6 30 30 H 1.08007 * 120.40550 * 359.97438 * 11 6 5 31 31 H 0.96999 * 119.99633 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0502 0.0000 4 8 3.4426 0.7227 -0.0005 5 6 3.5363 -0.6168 -0.0003 6 6 4.7782 -1.4136 -0.0013 7 6 4.7252 -2.8767 -0.0015 8 6 5.8674 -3.5846 -0.0030 9 7 7.0911 -2.9582 -0.0037 10 6 7.1816 -1.5812 -0.0035 11 6 6.0156 -0.7914 -0.0021 12 7 8.4613 -1.2482 -0.0049 13 7 9.2106 -2.4322 -0.0066 14 6 10.5754 -2.5246 -0.0089 15 1 11.0510 -3.4942 -0.0105 16 6 11.3482 -1.3733 -0.0091 17 7 10.7689 -0.1925 -0.0076 18 14 13.2119 -1.4993 -0.0129 19 1 13.7031 -1.5312 -1.4139 20 1 13.7889 -0.3238 0.6873 21 1 13.6253 -2.7433 0.6850 22 6 8.3434 -3.4634 -0.0068 23 8 8.6373 -4.6443 -0.0125 24 7 2.2986 -1.0827 -0.0050 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8901 0.5136 27 1 -0.3634 0.8898 0.5142 28 1 3.7722 -3.3849 -0.0004 29 1 5.8234 -4.6638 -0.0036 30 1 6.0854 0.2865 -0.0023 31 1 11.3096 0.6129 -0.0074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085470812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = 157.120253 kcal Electronic energy + Delta-G solvation = -21402.445496 eV Core-core repulsion = 17883.645051 eV Total energy + Delta-G solvation = -3518.800445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.080 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.32562 -41.89155 -37.56688 -36.01859 -35.89342 -34.35678 -33.14799 -31.72716 -30.95571 -29.22774 -28.19033 -26.58970 -24.46629 -23.55071 -22.13790 -21.43509 -20.94549 -18.47959 -17.96494 -17.79601 -17.13383 -16.53258 -15.94721 -15.54400 -15.12991 -14.45586 -14.35590 -14.10400 -13.71134 -13.69429 -13.15245 -12.71964 -12.65717 -12.35468 -12.08628 -11.81025 -11.59586 -11.54860 -11.20155 -11.15108 -10.90579 -10.71688 -10.57390 -10.50950 -9.79578 -9.22005 -9.19680 -8.71516 -7.00339 -6.90181 -4.41216 0.39731 1.58291 2.05648 2.53558 2.68716 2.85821 2.89962 2.99447 3.07377 3.55769 3.63738 3.75049 3.99058 4.03702 4.27719 4.73384 4.85937 5.00451 5.22045 5.23211 5.31838 5.41080 5.49164 5.73069 5.79816 5.95688 6.04505 6.32435 6.37622 6.55840 6.81068 6.93198 7.25954 7.63047 7.98437 8.26479 8.43904 8.82209 9.26896 10.06838 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.003872 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.287425 B = 7230.400861 C = 8085.541632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.169 3.831 3 N -0.397 5.397 4 O 0.073 5.927 5 C 0.258 3.742 6 C -0.068 4.068 7 C -0.141 4.141 8 C 0.106 3.894 9 N -0.458 5.458 10 C 0.132 3.868 11 C 0.014 3.986 12 N -0.189 5.189 13 N -0.205 5.205 14 C -0.266 4.266 15 H 0.134 0.866 16 C 0.034 3.966 17 N -0.769 5.769 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.260 1.260 22 C 0.553 3.447 23 O -0.587 6.587 24 N -0.488 5.488 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.532 1.632 0.040 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 N -0.109 5.109 4 O 0.017 5.983 5 C 0.044 3.956 6 C -0.078 4.078 7 C -0.165 4.165 8 C -0.013 4.013 9 N -0.175 5.175 10 C -0.117 4.117 11 C -0.012 4.012 12 N -0.026 5.026 13 N -0.006 5.006 14 C -0.399 4.399 15 H 0.151 0.849 16 C -0.182 4.182 17 N -0.398 5.398 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.184 1.184 22 C 0.259 3.741 23 O -0.468 6.468 24 N -0.223 5.223 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.168 0.832 29 H 0.178 0.822 30 H 0.171 0.829 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.138 2.308 0.036 11.375 hybrid contribution 0.365 -0.459 -0.015 0.587 sum -10.773 1.849 0.022 10.930 Atomic orbital electron populations 1.20092 0.83242 1.04411 1.04063 1.25761 1.00391 0.83850 1.00425 1.74597 0.89295 1.23933 1.23032 1.85401 1.22066 1.24278 1.66579 1.26033 0.94085 0.81128 0.94330 1.17662 0.85431 0.91410 1.13317 1.21094 0.97393 0.90282 1.07742 1.21150 0.81503 0.98588 1.00021 1.43110 1.06688 1.08110 1.59601 1.20894 0.94893 0.81564 1.14362 1.20342 0.86958 0.99575 0.94339 1.79028 0.95981 1.05104 1.22504 1.44943 1.05984 1.01880 1.47791 1.20098 0.74799 0.96599 1.48440 0.84862 1.25736 1.02461 0.94259 0.95786 1.70209 1.37299 0.97913 1.34403 0.85578 0.78792 0.79187 0.79375 1.19211 1.19750 1.18365 1.16385 0.80082 0.86341 0.91283 1.90887 1.79088 1.13031 1.63836 1.72116 0.99005 1.28545 1.22677 0.89535 0.89172 0.89743 0.83150 0.82208 0.82871 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 36.01 0.38 -0.14 16 2 C 0.17 2.28 8.20 -156.58 -1.28 1.00 16 3 N -0.40 -5.99 12.15 31.23 0.38 -5.61 16 4 O 0.07 1.13 11.17 16.43 0.18 1.32 16 5 C 0.26 3.96 8.04 -13.90 -0.11 3.84 16 6 C -0.07 -1.08 6.05 -102.72 -0.62 -1.70 16 7 C -0.14 -2.11 9.90 -37.66 -0.37 -2.48 16 8 C 0.11 1.81 10.83 -16.38 -0.18 1.63 16 9 N -0.46 -9.87 2.92 -66.63 -0.19 -10.06 16 10 C 0.13 2.83 7.82 -155.49 -1.22 1.61 16 11 C 0.01 0.24 9.85 -38.50 -0.38 -0.14 16 12 N -0.19 -4.70 10.49 31.26 0.33 -4.37 16 13 N -0.20 -5.37 3.68 -15.41 -0.06 -5.43 16 14 C -0.27 -6.78 10.08 -15.18 -0.15 -6.94 16 15 H 0.13 3.27 7.80 -52.49 -0.41 2.86 16 16 C 0.03 0.80 5.49 -17.52 -0.10 0.70 16 17 N -0.77 -19.03 11.81 55.48 0.66 -18.37 16 18 Si 0.95 17.69 29.55 -169.99 -5.02 12.67 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 22 C 0.55 14.03 8.59 -86.72 -0.75 13.28 16 23 O -0.59 -15.93 17.79 5.19 0.09 -15.83 16 24 N -0.49 -7.28 11.42 -10.15 -0.12 -7.40 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.15 1.89 8.03 -52.48 -0.42 1.47 16 29 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.15 2.31 7.98 -52.48 -0.42 1.89 16 31 H 0.28 6.34 8.31 -40.82 -0.34 6.01 16 LS Contribution 292.25 15.07 4.40 4.40 Total: -1.00 -30.44 292.25 -6.20 -36.65 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -2.08 Total: 1.37 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -4.78 Total: 10.67 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 1.00 Total: -51.24 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.28 Total: -14.52 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.44 -6.20 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085470812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.765 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds