Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30095 * 126.16832 * 2 1 4 4 O 1.21287 * 110.50163 * 180.02562 * 3 2 1 5 5 C 1.34282 * 109.67021 * 359.97438 * 4 3 2 6 6 C 1.47550 * 126.68983 * 179.97438 * 5 4 3 7 7 C 1.46402 * 120.61308 * 180.02562 * 6 5 4 8 8 C 1.34380 * 119.71644 * 179.97438 * 7 6 5 9 9 N 1.37472 * 121.09971 * 0.02562 * 8 7 6 10 10 C 1.37992 * 120.87050 * 359.97438 * 9 8 7 11 11 C 1.38505 * 120.61532 * 0.02562 * 6 5 4 12 12 N 1.32228 * 108.34492 * 180.02562 * 10 9 8 13 13 N 1.40117 * 107.74326 * 0.02562 * 12 10 9 14 14 C 1.36795 * 126.20177 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00435 * 180.02562 * 14 13 12 16 16 C 1.38668 * 119.99730 * 0.02842 * 14 13 12 17 17 N 1.31524 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47383 * 89.99704 * 18 16 14 20 20 H 1.48497 * 109.46908 * 209.99671 * 18 16 14 21 21 H 1.48498 * 109.46873 * 329.99754 * 18 16 14 22 22 C 1.34735 * 107.60779 * 0.02562 * 13 12 10 23 23 O 1.21698 * 125.95688 * 179.73990 * 22 13 12 24 24 N 1.32248 * 106.62163 * 0.23941 * 5 4 3 25 25 H 1.08995 * 109.47224 * 89.97643 * 1 2 3 26 26 H 1.08998 * 109.46945 * 209.98405 * 1 2 3 27 27 H 1.09003 * 109.47197 * 329.97612 * 1 2 3 28 28 H 1.08003 * 120.14191 * 359.96120 * 7 6 5 29 29 H 1.08009 * 119.45126 * 180.02562 * 8 7 6 30 30 H 1.08007 * 120.40550 * 359.97438 * 11 6 5 31 31 H 0.96999 * 119.99633 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0502 0.0000 4 8 3.4426 0.7227 -0.0005 5 6 3.5363 -0.6168 -0.0003 6 6 4.7782 -1.4136 -0.0013 7 6 4.7252 -2.8767 -0.0015 8 6 5.8674 -3.5846 -0.0030 9 7 7.0911 -2.9582 -0.0037 10 6 7.1816 -1.5812 -0.0035 11 6 6.0156 -0.7914 -0.0021 12 7 8.4613 -1.2482 -0.0049 13 7 9.2106 -2.4322 -0.0066 14 6 10.5754 -2.5246 -0.0089 15 1 11.0510 -3.4942 -0.0105 16 6 11.3482 -1.3733 -0.0091 17 7 10.7689 -0.1925 -0.0076 18 14 13.2119 -1.4993 -0.0129 19 1 13.7031 -1.5312 -1.4139 20 1 13.7889 -0.3238 0.6873 21 1 13.6253 -2.7433 0.6850 22 6 8.3434 -3.4634 -0.0068 23 8 8.6373 -4.6443 -0.0125 24 7 2.2986 -1.0827 -0.0050 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8901 0.5136 27 1 -0.3634 0.8898 0.5142 28 1 3.7722 -3.3849 -0.0004 29 1 5.8234 -4.6638 -0.0036 30 1 6.0854 0.2865 -0.0023 31 1 11.3096 0.6129 -0.0074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085470812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = 137.137028 kcal Electronic energy + Delta-G solvation = -21403.312033 eV Core-core repulsion = 17883.645051 eV Total energy + Delta-G solvation = -3519.666983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.080 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.54545 -43.63511 -39.20348 -37.80902 -37.12335 -35.89199 -34.71805 -33.10784 -32.58622 -30.27077 -29.67834 -28.23005 -26.00800 -24.87282 -23.62970 -23.03769 -22.38103 -20.14450 -19.34895 -19.18099 -18.51429 -18.09656 -17.73331 -17.09982 -16.69750 -16.04463 -15.91930 -15.55339 -14.85269 -14.44868 -14.37322 -14.34156 -13.86092 -13.71800 -13.54540 -13.28451 -13.09507 -12.88300 -12.84900 -12.66200 -12.31915 -12.12046 -12.07284 -11.80424 -11.42370 -11.05364 -10.61004 -10.38600 -8.67223 -8.58836 -6.31014 -0.98368 0.26729 0.66352 1.05244 1.23140 1.39198 1.45007 1.53297 1.60471 1.82919 2.17741 2.33720 2.42135 2.71602 2.96939 3.03395 3.39714 3.71160 3.79392 3.99000 4.23761 4.30110 4.50587 4.64630 4.66937 4.79492 4.89033 4.94016 5.02521 5.11257 5.15102 5.37541 5.61269 5.92944 6.25464 6.69700 7.04916 7.06836 7.47485 8.41871 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.003872 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.287425 B = 7230.400861 C = 8085.541632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.173 3.827 3 N -0.408 5.408 4 O 0.071 5.929 5 C 0.247 3.753 6 C -0.013 4.013 7 C -0.120 4.120 8 C 0.095 3.905 9 N -0.457 5.457 10 C 0.165 3.835 11 C -0.012 4.012 12 N -0.234 5.234 13 N -0.228 5.228 14 C -0.332 4.332 15 H 0.122 0.878 16 C 0.003 3.997 17 N -0.816 5.816 18 Si 1.019 2.981 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.258 1.258 22 C 0.529 3.471 23 O -0.626 6.626 24 N -0.480 5.480 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.190 0.810 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 2.256 0.028 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 N -0.120 5.120 4 O 0.016 5.984 5 C 0.031 3.969 6 C -0.023 4.023 7 C -0.143 4.143 8 C -0.023 4.023 9 N -0.173 5.173 10 C -0.091 4.091 11 C -0.037 4.037 12 N -0.069 5.069 13 N -0.030 5.030 14 C -0.461 4.461 15 H 0.140 0.860 16 C -0.208 4.208 17 N -0.445 5.445 18 Si 0.837 3.163 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.182 1.182 22 C 0.234 3.766 23 O -0.511 6.511 24 N -0.215 5.215 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.207 0.793 29 H 0.201 0.799 30 H 0.193 0.807 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.240 2.963 0.025 15.525 hybrid contribution 0.735 -0.550 -0.014 0.918 sum -14.505 2.413 0.011 14.704 Atomic orbital electron populations 1.20403 0.79764 1.06035 1.05779 1.26653 1.02226 0.82712 0.98428 1.74648 0.89261 1.24665 1.23445 1.85420 1.22574 1.24104 1.66290 1.25836 0.93964 0.81417 0.95688 1.17938 0.85300 0.92075 1.06953 1.21553 0.98076 0.89586 1.05101 1.21831 0.80288 1.00224 0.99929 1.43298 1.07089 1.08287 1.58601 1.21611 0.95250 0.81996 1.10228 1.20554 0.85896 1.00518 0.96700 1.78924 0.97286 1.05771 1.24876 1.44966 1.06292 1.01948 1.49768 1.20168 0.75410 0.96961 1.53608 0.86048 1.26645 1.06749 0.93344 0.94070 1.70294 1.38867 0.98461 1.36899 0.84587 0.72878 0.79265 0.79527 1.18583 1.18686 1.18183 1.16573 0.81081 0.86140 0.92824 1.90807 1.79848 1.14092 1.66332 1.72145 0.98765 1.29210 1.21355 0.87624 0.87493 0.88235 0.79250 0.79869 0.80674 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.17 3.83 8.20 138.54 1.14 4.97 16 3 N -0.41 -10.69 12.15 -58.36 -0.71 -11.40 16 4 O 0.07 1.94 11.17 68.87 0.77 2.70 16 5 C 0.25 6.46 8.04 87.20 0.70 7.16 16 6 C -0.01 -0.36 6.05 -18.63 -0.11 -0.47 16 7 C -0.12 -3.05 9.90 23.51 0.23 -2.81 16 8 C 0.09 3.00 10.83 82.93 0.90 3.90 16 9 N -0.46 -19.81 2.92 -482.78 -1.41 -21.22 16 10 C 0.16 7.08 7.82 133.88 1.05 8.13 16 11 C -0.01 -0.38 9.85 22.97 0.23 -0.15 16 12 N -0.23 -12.23 10.49 -55.02 -0.58 -12.81 16 13 N -0.23 -12.83 3.68 -320.92 -1.18 -14.01 16 14 C -0.33 -18.41 10.08 84.02 0.85 -17.57 16 15 H 0.12 6.64 7.80 -2.91 -0.02 6.61 16 16 C 0.00 0.17 5.49 84.84 0.47 0.64 16 17 N -0.82 -42.86 11.81 21.61 0.26 -42.60 16 18 Si 1.02 38.36 29.55 68.60 2.03 40.39 16 19 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 22 C 0.53 28.26 8.59 178.99 1.54 29.80 16 23 O -0.63 -35.96 17.79 -4.34 -0.08 -36.04 16 24 N -0.48 -11.80 11.42 -302.49 -3.45 -15.25 16 25 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.19 3.54 8.03 -2.91 -0.02 3.51 16 29 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.18 4.93 7.98 -2.91 -0.02 4.91 16 31 H 0.29 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -71.70 292.25 4.57 -67.13 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.20 Total: 9.51 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 7.73 Total: 33.59 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -7.07 Total: -117.29 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: 0.69 Total: -33.33 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -71.70 4.57 -67.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085470812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.266 kcal (2) G-P(sol) polarization free energy of solvation -71.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds