Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 C 1.53000 * 109.47176 * 239.99664 * 2 1 3 5 5 C 1.50703 * 109.46958 * 119.99607 * 2 1 3 6 6 C 1.33641 * 126.03640 * 60.01807 * 5 2 1 7 7 N 1.31774 * 114.50001 * 179.97438 * 6 5 2 8 8 C 1.29034 * 117.12480 * 0.02562 * 7 6 5 9 9 S 1.76205 * 124.91538 * 179.97438 * 8 7 6 10 10 O 1.42099 * 103.00111 * 336.17743 * 9 8 7 11 11 C 1.81407 * 102.99657 * 90.02629 * 9 8 7 12 12 C 1.53000 * 109.46955 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47196 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00004 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00047 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47401 * 89.99609 * 17 15 13 19 19 H 1.48500 * 109.47061 * 210.00091 * 17 15 13 20 20 H 1.48504 * 109.46835 * 329.99741 * 17 15 13 21 21 S 1.70974 * 110.16586 * 0.02562 * 8 7 6 22 22 H 1.08993 * 109.46940 * 300.00437 * 1 2 3 23 23 H 1.08999 * 109.46743 * 60.00032 * 1 2 3 24 24 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47033 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47382 * 299.99576 * 3 2 1 27 27 H 1.09001 * 109.47509 * 59.99731 * 3 2 1 28 28 H 1.08997 * 109.47017 * 300.00301 * 4 2 1 29 29 H 1.08999 * 109.47036 * 60.00484 * 4 2 1 30 30 H 1.08995 * 109.46881 * 179.97438 * 4 2 1 31 31 H 1.07997 * 122.74801 * 0.02562 * 6 5 2 32 32 H 1.09001 * 109.46839 * 299.99734 * 11 9 8 33 33 H 1.08999 * 109.46822 * 60.00173 * 11 9 8 34 34 H 1.08997 * 109.47021 * 300.00345 * 12 11 9 35 35 H 1.09003 * 109.46884 * 60.00051 * 12 11 9 36 36 H 0.97001 * 120.00120 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.7853 -1.9816 1.5604 7 7 2.3402 -2.3707 2.6905 8 6 3.0413 -1.4983 3.3326 9 16 3.8703 -1.7960 4.8587 10 8 3.1406 -2.8824 5.4122 11 6 5.5060 -2.3739 4.3285 12 6 6.3623 -2.6798 5.5589 13 6 7.7210 -3.1605 5.1185 14 1 7.9509 -3.2395 4.0662 15 6 8.6706 -3.4995 6.0589 16 7 9.8564 -3.9186 5.6746 17 14 8.2727 -3.3636 7.8790 18 1 7.6997 -4.6472 8.3578 19 1 9.5144 -3.0628 8.6360 20 1 7.2877 -2.2725 8.0902 21 16 3.0483 -0.0112 2.4889 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6767 -1.7489 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 1.1810 -2.6366 0.9504 32 1 5.3953 -3.2773 3.7287 33 1 5.9896 -1.5994 3.7332 34 1 6.4729 -1.7762 6.1584 35 1 5.8789 -3.4541 6.1546 36 1 10.5244 -4.1574 6.3362 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123542461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -16.436232 kcal Electronic energy + Delta-G solvation = -17890.200130 eV Core-core repulsion = 15013.318126 eV Total energy + Delta-G solvation = -2876.882004 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85236 -37.17135 -35.38012 -33.73432 -31.26761 -29.68336 -27.77904 -27.63770 -25.85399 -25.36803 -21.50254 -20.94241 -19.77210 -18.11015 -17.25296 -16.73032 -15.99603 -15.11302 -14.98092 -14.49464 -14.32866 -14.22945 -14.07948 -13.90660 -13.61168 -12.67633 -12.66741 -12.65131 -12.32442 -12.07918 -11.88535 -11.71664 -11.59179 -11.42900 -11.07933 -10.99573 -10.80581 -10.34124 -10.05419 -9.90790 -9.42691 -9.34903 -9.27765 -9.09634 -8.59590 -8.10289 -6.09399 -4.09245 0.38525 1.20288 1.60977 2.00030 2.63555 3.05204 3.29750 3.37000 3.38198 4.11621 4.18208 4.40743 4.43783 4.53821 4.78513 4.90350 5.16784 5.23252 5.23394 5.36741 5.38423 5.48014 5.53788 5.59004 5.72350 5.83756 5.89918 5.91173 5.92595 6.01273 6.54171 7.01724 7.12803 7.64537 7.66148 8.46721 8.93820 9.50885 11.03579 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.003716 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.244512 B = 7533.471675 C = 7857.754236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 C -0.152 4.152 4 C -0.138 4.138 5 C -0.196 4.196 6 C 0.019 3.981 7 N -0.403 5.403 8 C -0.314 4.314 9 S 1.337 4.663 10 O -0.824 6.824 11 C -0.413 4.413 12 C 0.003 3.997 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.262 1.262 21 S 0.191 5.809 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.171 0.829 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.029 0.971 35 H 0.019 0.981 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 15.199 -11.077 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.004 3.996 3 C -0.210 4.210 4 C -0.196 4.196 5 C -0.318 4.318 6 C -0.136 4.136 7 N -0.117 5.117 8 C -0.680 4.680 9 S 1.529 4.471 10 O -0.819 6.819 11 C -0.554 4.554 12 C -0.036 4.036 13 C -0.556 4.556 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.186 1.186 21 S 0.446 5.554 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.188 0.812 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.048 0.952 35 H 0.037 0.963 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.138 15.692 -9.656 25.163 hybrid contribution -0.661 -2.553 -1.024 2.829 sum -17.798 13.139 -10.680 24.566 Atomic orbital electron populations 1.21905 0.92814 1.02510 1.02291 1.19087 0.95859 0.94696 0.89930 1.22037 1.01789 0.94361 1.02798 1.21912 1.01706 1.00394 0.95627 1.26347 1.04990 0.98606 1.01867 1.21959 1.02781 0.93990 0.94874 1.66664 1.06026 1.33828 1.05161 1.36717 1.12279 0.98002 1.20980 1.69693 0.85335 1.11833 0.80207 1.93127 1.65873 1.57328 1.65580 1.27553 1.11435 1.08536 1.07835 1.19279 0.95780 0.97066 0.91469 1.20981 0.94819 1.44445 0.95404 0.90781 1.25013 0.94827 0.94410 0.99087 1.69899 1.04819 1.44777 1.34337 0.86845 0.78131 0.79390 0.85445 1.20092 1.21029 1.18635 1.83436 1.44513 1.14394 1.13043 0.92232 0.91679 0.92176 0.91766 0.91313 0.91881 0.92154 0.91668 0.92080 0.81232 0.89460 0.86975 0.95250 0.96319 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.35 37.16 0.31 -0.64 16 2 C 0.01 0.06 0.93 -155.65 -0.14 -0.09 16 3 C -0.15 -1.02 7.59 37.16 0.28 -0.74 16 4 C -0.14 -1.03 8.35 37.16 0.31 -0.72 16 5 C -0.20 -2.19 5.15 -35.92 -0.19 -2.38 16 6 C 0.02 0.26 10.62 -19.19 -0.20 0.05 16 7 N -0.40 -7.08 10.43 -14.93 -0.16 -7.24 16 8 C -0.31 -4.90 7.06 51.59 0.36 -4.54 16 9 S 1.34 21.83 13.84 -107.50 -1.49 20.35 16 10 O -0.82 -18.47 17.79 -35.23 -0.63 -19.09 16 11 C -0.41 -8.05 5.82 37.16 0.22 -7.83 16 12 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 13 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 14 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 17 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 21 S 0.19 2.14 21.84 -107.50 -2.35 -0.21 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.43 8.00 -51.93 -0.42 0.01 16 25 H 0.06 0.45 8.00 -51.93 -0.42 0.04 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.41 8.00 -51.93 -0.42 0.00 16 28 H 0.06 0.46 8.00 -51.93 -0.42 0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 32 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 33 H 0.11 1.90 8.14 -51.92 -0.42 1.47 16 34 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 35 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -37.33 327.24 -8.57 -45.90 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -5.40 Total: -4.48 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 0.41 Total: -30.07 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.62 Total: -34.10 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.63 Total: -19.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 23.97 SS G_CDS: -3.84 Total: 20.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.33 -8.57 -45.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123542461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.467 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds