Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 C 1.53000 * 109.47176 * 239.99664 * 2 1 3 5 5 C 1.50703 * 109.46958 * 119.99607 * 2 1 3 6 6 C 1.33641 * 126.03640 * 60.01807 * 5 2 1 7 7 N 1.31774 * 114.50001 * 179.97438 * 6 5 2 8 8 C 1.29034 * 117.12480 * 0.02562 * 7 6 5 9 9 S 1.76205 * 124.91538 * 179.97438 * 8 7 6 10 10 O 1.42099 * 103.00111 * 336.17743 * 9 8 7 11 11 C 1.81407 * 102.99657 * 90.02629 * 9 8 7 12 12 C 1.53000 * 109.46955 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47196 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00004 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00047 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47401 * 89.99609 * 17 15 13 19 19 H 1.48500 * 109.47061 * 210.00091 * 17 15 13 20 20 H 1.48504 * 109.46835 * 329.99741 * 17 15 13 21 21 S 1.70974 * 110.16586 * 0.02562 * 8 7 6 22 22 H 1.08993 * 109.46940 * 300.00437 * 1 2 3 23 23 H 1.08999 * 109.46743 * 60.00032 * 1 2 3 24 24 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47033 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47382 * 299.99576 * 3 2 1 27 27 H 1.09001 * 109.47509 * 59.99731 * 3 2 1 28 28 H 1.08997 * 109.47017 * 300.00301 * 4 2 1 29 29 H 1.08999 * 109.47036 * 60.00484 * 4 2 1 30 30 H 1.08995 * 109.46881 * 179.97438 * 4 2 1 31 31 H 1.07997 * 122.74801 * 0.02562 * 6 5 2 32 32 H 1.09001 * 109.46839 * 299.99734 * 11 9 8 33 33 H 1.08999 * 109.46822 * 60.00173 * 11 9 8 34 34 H 1.08997 * 109.47021 * 300.00345 * 12 11 9 35 35 H 1.09003 * 109.46884 * 60.00051 * 12 11 9 36 36 H 0.97001 * 120.00120 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.7853 -1.9816 1.5604 7 7 2.3402 -2.3707 2.6905 8 6 3.0413 -1.4983 3.3326 9 16 3.8703 -1.7960 4.8587 10 8 3.1406 -2.8824 5.4122 11 6 5.5060 -2.3739 4.3285 12 6 6.3623 -2.6798 5.5589 13 6 7.7210 -3.1605 5.1185 14 1 7.9509 -3.2395 4.0662 15 6 8.6706 -3.4995 6.0589 16 7 9.8564 -3.9186 5.6746 17 14 8.2727 -3.3636 7.8790 18 1 7.6997 -4.6472 8.3578 19 1 9.5144 -3.0628 8.6360 20 1 7.2877 -2.2725 8.0902 21 16 3.0483 -0.0112 2.4889 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6767 -1.7489 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 1.1810 -2.6366 0.9504 32 1 5.3953 -3.2773 3.7287 33 1 5.9896 -1.5994 3.7332 34 1 6.4729 -1.7762 6.1584 35 1 5.8789 -3.4541 6.1546 36 1 10.5244 -4.1574 6.3362 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123542461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -43.706058 kcal Electronic energy + Delta-G solvation = -17891.382638 eV Core-core repulsion = 15013.318126 eV Total energy + Delta-G solvation = -2878.064513 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88466 -37.90696 -36.97124 -35.74674 -33.29454 -30.67442 -28.31349 -28.18369 -27.66546 -26.61730 -23.00939 -22.21732 -20.82343 -19.24145 -19.04256 -18.14441 -17.08822 -16.39664 -16.30981 -15.85932 -15.80790 -15.43392 -15.07602 -14.78974 -14.75265 -14.65449 -13.86607 -13.52019 -13.20416 -13.18532 -12.97001 -12.72105 -12.66518 -12.61969 -12.35104 -12.06469 -12.01894 -11.77613 -11.68059 -11.65487 -11.45494 -10.80477 -10.56091 -10.33612 -10.16460 -9.56931 -8.31893 -6.37983 -0.70824 0.17332 0.55959 0.76261 1.36957 1.39183 1.41703 1.50118 1.81404 2.35151 2.75768 3.02936 3.43659 3.74397 3.83364 3.96248 4.15906 4.26188 4.27266 4.43250 4.73074 4.74906 4.75419 4.83637 4.92505 4.96887 4.97837 5.07748 5.23589 5.24447 5.28479 5.35317 5.36847 5.55947 6.23133 6.57856 6.68288 7.26240 8.84591 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.003716 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.244512 B = 7533.471675 C = 7857.754236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 C -0.155 4.155 4 C -0.139 4.139 5 C -0.179 4.179 6 C -0.007 4.007 7 N -0.448 5.448 8 C -0.368 4.368 9 S 1.426 4.574 10 O -0.889 6.889 11 C -0.424 4.424 12 C -0.001 4.001 13 C -0.532 4.532 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.949 5.949 17 Si 0.939 3.061 18 H -0.279 1.279 19 H -0.275 1.275 20 H -0.224 1.224 21 S 0.281 5.719 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.182 0.818 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.065 0.935 35 H 0.005 0.995 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.153 18.357 -11.420 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.002 3.998 3 C -0.213 4.213 4 C -0.197 4.197 5 C -0.302 4.302 6 C -0.162 4.162 7 N -0.164 5.164 8 C -0.733 4.733 9 S 1.619 4.381 10 O -0.885 6.885 11 C -0.563 4.563 12 C -0.039 4.039 13 C -0.571 4.571 14 H 0.050 0.950 15 C -0.192 4.192 16 N -0.589 5.589 17 Si 0.761 3.239 18 H -0.205 1.205 19 H -0.200 1.200 20 H -0.147 1.147 21 S 0.537 5.463 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.199 0.801 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.950 18.856 -9.966 28.530 hybrid contribution -0.176 -3.432 -1.232 3.651 sum -19.126 15.423 -11.198 27.002 Atomic orbital electron populations 1.21917 0.91582 1.02597 1.03323 1.19319 0.96769 0.95310 0.88409 1.22098 1.01698 0.93307 1.04202 1.21935 1.01124 1.00445 0.96181 1.26990 1.02788 0.97974 1.02421 1.22140 1.04027 0.95477 0.94540 1.66615 1.07007 1.35918 1.06844 1.36042 1.14330 1.00978 1.21970 1.68778 0.81964 1.08283 0.79061 1.92984 1.67413 1.59180 1.68890 1.27612 1.14531 1.07957 1.06162 1.19245 0.93510 0.97836 0.93354 1.21335 0.97468 1.44558 0.93706 0.94977 1.26030 0.94458 0.93912 1.04760 1.70054 1.06220 1.46331 1.36322 0.85821 0.79141 0.80352 0.78545 1.20529 1.19983 1.14682 1.83037 1.42337 1.10194 1.10781 0.92411 0.89466 0.92657 0.91983 0.89165 0.91409 0.92664 0.89376 0.93014 0.80105 0.92857 0.84639 0.91735 0.97657 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.35 71.98 0.60 -0.84 16 2 C 0.00 0.06 0.93 -52.92 -0.05 0.02 16 3 C -0.16 -1.47 7.59 71.98 0.55 -0.92 16 4 C -0.14 -1.69 8.35 71.98 0.60 -1.08 16 5 C -0.18 -3.61 5.15 24.64 0.13 -3.48 16 6 C -0.01 -0.19 10.62 83.66 0.89 0.70 16 7 N -0.45 -15.79 10.43 -201.14 -2.10 -17.89 16 8 C -0.37 -11.22 7.06 130.65 0.92 -10.30 16 9 S 1.43 45.92 13.84 -56.49 -0.78 45.13 16 10 O -0.89 -40.46 17.79 -148.98 -2.65 -43.11 16 11 C -0.42 -16.76 5.82 71.98 0.42 -16.34 16 12 C 0.00 -0.03 4.05 29.85 0.12 0.09 16 13 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 14 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 15 C 0.01 0.34 5.47 84.65 0.46 0.80 16 16 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 17 Si 0.94 43.75 27.47 68.60 1.88 45.64 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.22 -9.05 6.54 99.48 0.65 -8.40 16 21 S 0.28 5.57 21.84 -56.49 -1.23 4.33 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.05 0.65 8.00 -2.39 -0.02 0.63 16 25 H 0.06 0.63 8.00 -2.39 -0.02 0.61 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.60 8.00 -2.39 -0.02 0.58 16 28 H 0.05 0.73 8.00 -2.39 -0.02 0.72 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 34 H 0.06 2.58 7.20 -2.39 -0.02 2.57 16 35 H 0.01 0.25 7.57 -2.39 -0.02 0.24 16 36 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -85.20 327.24 1.31 -83.90 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.00 Total: 4.09 kcal Atomic # 6 Polarization: -67.19 SS G_CDS: 4.89 Total: -62.30 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.80 Total: -77.68 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -2.65 Total: -43.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Atomic # 16 Polarization: 51.48 SS G_CDS: -2.02 Total: 49.46 kcal Total: -85.20 1.31 -83.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123542461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.189 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds