Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35715 * 117.00257 * 2 1 4 4 C 1.39180 * 119.85846 * 0.02562 * 3 2 1 5 5 C 1.36542 * 120.37750 * 179.74721 * 4 3 2 6 6 C 1.39895 * 120.07966 * 0.50905 * 5 4 3 7 7 C 1.47205 * 120.14228 * 179.74200 * 6 5 4 8 8 O 1.21653 * 120.00137 * 179.72949 * 7 6 5 9 9 N 1.34777 * 119.99637 * 359.72641 * 7 6 5 10 10 C 1.36929 * 119.99797 * 179.72303 * 9 7 6 11 11 H 1.08001 * 120.00178 * 0.27712 * 10 9 7 12 12 C 1.39004 * 120.00340 * 180.27676 * 10 9 7 13 13 N 1.31394 * 119.99651 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47327 * 60.00145 * 14 12 10 16 16 H 1.48502 * 109.47317 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47211 * 300.00278 * 14 12 10 18 18 C 1.40380 * 119.71806 * 359.47098 * 6 5 4 19 19 O 1.35657 * 120.18471 * 180.29412 * 18 6 5 20 20 C 1.42902 * 116.99982 * 180.02562 * 19 18 6 21 21 F 1.39906 * 109.46837 * 299.99581 * 20 19 18 22 22 F 1.39895 * 109.47509 * 59.99558 * 20 19 18 23 23 C 1.38458 * 119.62914 * 0.27578 * 18 6 5 24 24 H 1.08997 * 109.47024 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46686 * 300.00285 * 1 2 3 26 26 H 1.08998 * 109.47196 * 60.00179 * 1 2 3 27 27 H 1.08006 * 119.81248 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.96310 * 180.25920 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 0.96999 * 119.99875 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.47066 * 180.02562 * 20 19 18 32 32 H 1.07997 * 120.04728 * 179.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2844 2.3746 0.0005 5 6 1.8932 3.5968 0.0057 6 6 3.2894 3.6845 -0.0002 7 6 3.9473 5.0014 -0.0003 8 8 5.1616 5.0748 -0.0005 9 7 3.2042 6.1258 -0.0003 10 6 3.8161 7.3508 0.0053 11 1 4.8941 7.4160 0.0052 12 6 3.0498 8.5105 0.0111 13 7 1.7382 8.4313 0.0118 14 14 3.8845 10.1816 0.0181 15 1 4.7310 10.3171 -1.1944 16 1 2.8533 11.2501 0.0243 17 1 4.7330 10.3061 1.2305 18 6 4.0605 2.5115 -0.0002 19 8 5.4150 2.5856 0.0001 20 6 6.1324 1.3496 -0.0006 21 9 5.7959 0.6146 1.1413 22 9 5.7963 0.6159 -1.1433 23 6 3.4307 1.2784 -0.0002 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2061 2.3120 0.0014 28 1 1.2963 4.4968 0.0104 29 1 2.2359 6.0674 0.0002 30 1 1.2035 9.2405 0.0155 31 1 7.2035 1.5513 0.0002 32 1 4.0173 0.3716 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170609082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -210.107231 kcal Electronic energy + Delta-G solvation = -22728.792870 eV Core-core repulsion = 18711.086309 eV Total energy + Delta-G solvation = -4017.706561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.33481 -48.31784 -41.68204 -40.21092 -39.52926 -37.42936 -35.99216 -33.41531 -31.96259 -31.15480 -28.41901 -27.23625 -26.72859 -24.47339 -23.29148 -21.51026 -20.50932 -19.83431 -19.17915 -18.91030 -18.25829 -18.17906 -17.10699 -16.78646 -16.67403 -16.33202 -15.80551 -15.78447 -15.35434 -15.22407 -14.95431 -14.78856 -14.61515 -14.52596 -13.82120 -13.70220 -13.53773 -13.31532 -13.15343 -12.92473 -12.86138 -12.44941 -12.11279 -11.89816 -11.88971 -11.51126 -10.40400 -10.05326 -9.87900 -9.28536 -8.50362 -5.94360 -0.12509 0.17633 1.43167 1.43616 1.54485 1.62099 2.02379 2.14705 2.29727 2.52752 2.71382 3.11707 3.31695 3.50977 3.59044 3.68930 3.92389 3.99955 4.15742 4.23188 4.41502 4.44388 4.46610 4.77812 4.85361 5.07614 5.19437 5.33401 5.39335 5.82977 6.00629 6.28155 6.56891 7.08495 7.49738 8.07508 8.67254 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.005012 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.132734 B = 5585.323927 C = 6928.651639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.180 3.820 4 C -0.222 4.222 5 C -0.023 4.023 6 C -0.193 4.193 7 C 0.476 3.524 8 O -0.619 6.619 9 N -0.558 5.558 10 C -0.333 4.333 11 H 0.083 0.917 12 C -0.010 4.010 13 N -0.914 5.914 14 Si 0.997 3.003 15 H -0.271 1.271 16 H -0.268 1.268 17 H -0.271 1.271 18 C 0.178 3.822 19 O -0.305 6.305 20 C 0.400 3.600 21 F -0.206 7.206 22 F -0.206 7.206 23 C -0.245 4.245 24 H 0.126 0.874 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.173 0.827 28 H 0.145 0.855 29 H 0.397 0.603 30 H 0.281 0.719 31 H 0.228 0.772 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -16.068 -0.005 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.133 3.867 4 C -0.240 4.240 5 C -0.042 4.042 6 C -0.197 4.197 7 C 0.265 3.735 8 O -0.507 6.507 9 N -0.195 5.195 10 C -0.463 4.463 11 H 0.101 0.899 12 C -0.211 4.211 13 N -0.555 5.555 14 Si 0.820 3.180 15 H -0.196 1.196 16 H -0.192 1.192 17 H -0.196 1.196 18 C 0.131 3.869 19 O -0.221 6.221 20 C 0.310 3.690 21 F -0.188 7.188 22 F -0.187 7.187 23 C -0.265 4.265 24 H 0.144 0.856 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.191 0.809 28 H 0.163 0.837 29 H 0.232 0.768 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.385 -15.920 -0.006 16.098 hybrid contribution -0.315 0.661 0.005 0.733 sum -2.701 -15.259 -0.001 15.496 Atomic orbital electron populations 1.23527 0.75444 1.06203 1.03017 1.86024 1.24308 1.25695 1.87469 1.18813 0.90970 0.85266 0.91661 1.21148 1.02091 0.90358 1.10443 1.20916 0.91327 0.99334 0.92669 1.19533 0.94159 0.91334 1.14672 1.18065 0.87049 0.84428 0.83909 1.90580 1.14836 1.87593 1.57723 1.41815 1.09222 1.04632 1.63815 1.19719 0.93496 0.83250 1.49788 0.89945 1.26111 0.96036 1.03053 0.95873 1.69643 1.04971 1.31688 1.49155 0.84925 0.77832 0.76153 0.79052 1.19595 1.19195 1.19608 1.18615 0.81928 0.92759 0.93579 1.86978 1.16571 1.31538 1.86991 1.24307 0.99007 0.74490 0.71146 1.93063 1.94462 1.78724 1.52506 1.93060 1.94465 1.78779 1.52438 1.20614 0.94268 0.96189 1.15391 0.85608 0.91049 0.91041 0.80929 0.83714 0.76780 0.90935 0.75598 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 16 2 O -0.32 -7.65 10.48 -90.37 -0.95 -8.60 16 3 C 0.18 5.18 6.69 22.61 0.15 5.34 16 4 C -0.22 -6.00 8.96 22.10 0.20 -5.80 16 5 C -0.02 -0.80 9.48 22.27 0.21 -0.59 16 6 C -0.19 -8.27 5.89 -20.00 -0.12 -8.39 16 7 C 0.48 25.24 7.70 86.60 0.67 25.90 16 8 O -0.62 -36.81 14.73 16.74 0.25 -36.57 16 9 N -0.56 -30.14 5.23 -310.16 -1.62 -31.76 16 10 C -0.33 -19.28 9.68 84.08 0.81 -18.47 16 11 H 0.08 5.05 7.15 -2.91 -0.02 5.03 16 12 C -0.01 -0.54 5.50 84.94 0.47 -0.07 16 13 N -0.91 -48.85 13.05 21.67 0.28 -48.57 16 14 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.18 7.00 6.49 22.84 0.15 7.15 16 19 O -0.30 -11.88 8.50 -68.78 -0.58 -12.46 16 20 C 0.40 10.61 5.98 113.37 0.68 11.29 16 21 F -0.21 -5.64 15.58 44.97 0.70 -4.94 16 22 F -0.21 -5.63 15.59 44.97 0.70 -4.93 16 23 C -0.25 -8.12 8.19 22.44 0.18 -7.94 16 24 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 26 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 27 H 0.17 3.21 6.26 -2.91 -0.02 3.19 16 28 H 0.15 4.75 6.39 -2.91 -0.02 4.73 16 29 H 0.40 19.94 5.91 -92.71 -0.55 19.39 16 30 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.23 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.15 4.60 5.11 -2.91 -0.01 4.59 16 Total: -1.00 -74.54 289.10 5.97 -68.57 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.65 Total: 24.91 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 4.51 Total: 9.69 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.34 Total: -80.33 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -1.29 Total: -57.63 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 1.40 Total: -9.87 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.54 5.97 -68.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170609082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.537 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds