Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46637 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00199 * 2 1 3 5 5 C 1.50697 * 109.47356 * 120.00089 * 2 1 3 6 6 C 1.33333 * 125.94745 * 60.02384 * 5 2 1 7 7 N 1.32093 * 114.58409 * 179.76942 * 6 5 2 8 8 C 1.29758 * 116.86040 * 0.44621 * 7 6 5 9 9 S 1.76195 * 124.95802 * 179.84431 * 8 7 6 10 10 C 1.80999 * 99.99992 * 359.69147 * 9 8 7 11 11 C 1.53002 * 109.47312 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46986 * 60.00380 * 11 10 9 13 13 O 1.42898 * 109.47113 * 300.00340 * 11 10 9 14 14 C 1.50706 * 109.46931 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 21 21 H 1.48498 * 109.47295 * 60.00420 * 18 16 14 22 22 S 1.70966 * 110.08785 * 359.57605 * 8 7 6 23 23 H 1.09001 * 109.47297 * 299.99531 * 1 2 3 24 24 H 1.09001 * 109.47150 * 60.00225 * 1 2 3 25 25 H 1.08999 * 109.46528 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46686 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47167 * 299.99764 * 3 2 1 28 28 H 1.08993 * 109.47043 * 60.00497 * 3 2 1 29 29 H 1.09001 * 109.47481 * 299.99720 * 4 2 1 30 30 H 1.09001 * 109.47531 * 59.99810 * 4 2 1 31 31 H 1.08999 * 109.47244 * 179.97438 * 4 2 1 32 32 H 1.08001 * 122.70921 * 0.02562 * 6 5 2 33 33 H 1.09004 * 109.47282 * 60.00175 * 10 9 8 34 34 H 1.09004 * 109.47228 * 300.00254 * 10 9 8 35 35 H 0.96701 * 113.99881 * 299.99463 * 13 11 10 36 36 H 0.97000 * 119.99706 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.7849 -1.9790 1.5577 7 7 2.3432 -2.3740 2.6878 8 6 3.0437 -1.4939 3.3346 9 16 3.8748 -1.7881 4.8601 10 6 3.4288 -3.5211 5.1319 11 6 4.0573 -4.0107 6.4381 12 1 3.6891 -3.4064 7.2673 13 8 5.4790 -3.8918 6.3566 14 6 3.6853 -5.4534 6.6647 15 1 3.0633 -5.9696 5.9484 16 6 4.1392 -6.1143 7.7864 17 7 4.8962 -5.4855 8.6589 18 14 3.6788 -7.9028 8.0669 19 1 4.2876 -8.3776 9.3354 20 1 2.2013 -8.0263 8.1509 21 1 4.1810 -8.7262 6.9377 22 16 3.0489 -0.0092 2.4868 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 1.1803 -2.6323 0.9459 33 1 3.7974 -4.1254 4.3030 34 1 2.3443 -3.6118 5.1936 35 1 5.8760 -4.4045 5.6393 36 1 5.1355 -4.5569 8.5130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253426548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -37.172814 kcal Electronic energy + Delta-G solvation = -17846.185531 eV Core-core repulsion = 14968.404321 eV Total energy + Delta-G solvation = -2877.781210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.69193 -37.05063 -36.31618 -32.20955 -30.05640 -29.38310 -27.69773 -27.55507 -25.47556 -24.76353 -21.53506 -21.26635 -19.67031 -17.90084 -17.48540 -16.34825 -15.50958 -15.00040 -14.75056 -14.49287 -14.14796 -14.07194 -13.95618 -13.77496 -13.66349 -12.63400 -12.59637 -12.51081 -12.00915 -11.93680 -11.76428 -11.66358 -11.45281 -11.33824 -10.87800 -10.80873 -10.36043 -10.21485 -10.11105 -9.52816 -9.51117 -9.45422 -9.18184 -8.54537 -8.20876 -7.22535 -6.43636 -4.28939 0.69302 1.11317 1.73702 1.94806 2.72088 2.85259 3.40341 3.41036 3.60489 4.30997 4.46939 4.53954 4.63383 4.78890 5.02523 5.24408 5.25740 5.30428 5.44015 5.48306 5.55501 5.63223 5.68464 5.74259 5.79310 5.85319 5.96515 5.98846 5.99186 6.13035 6.55316 7.25068 7.69651 7.82658 8.25389 8.76367 8.95816 9.56299 10.96316 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.035407 B = 0.003446 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.612770 B = 8123.205133 C = 8644.088013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.229 4.229 6 C 0.053 3.947 7 N -0.479 5.479 8 C 0.021 3.979 9 S -0.016 6.016 10 C -0.103 4.103 11 C 0.226 3.774 12 H 0.059 0.941 13 O -0.576 6.576 14 C -0.646 4.646 15 H 0.054 0.946 16 C 0.037 3.963 17 N -0.888 5.888 18 Si 1.070 2.930 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.287 1.287 22 S 0.153 5.847 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.170 0.830 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.357 0.643 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 12.546 -18.265 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 C -0.208 4.208 4 C -0.195 4.195 5 C -0.354 4.354 6 C -0.101 4.101 7 N -0.198 5.198 8 C -0.364 4.364 9 S 0.219 5.781 10 C -0.253 4.253 11 C 0.166 3.834 12 H 0.077 0.923 13 O -0.381 6.381 14 C -0.685 4.685 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.522 5.522 18 Si 0.897 3.103 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.213 1.213 22 S 0.407 5.593 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.187 0.813 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.203 0.797 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.211 12.859 -15.508 20.809 hybrid contribution -1.580 -0.609 -2.890 3.349 sum -6.791 12.250 -18.398 23.123 Atomic orbital electron populations 1.21904 0.93120 1.02393 1.02065 1.18951 0.95580 0.94394 0.89955 1.22000 1.01518 0.94721 1.02516 1.21902 1.01466 1.00366 0.95746 1.25806 1.08181 0.98658 1.02761 1.21565 1.00949 0.93734 0.93850 1.67082 1.11638 1.33130 1.07968 1.28778 1.04594 0.96520 1.06473 1.86044 1.59609 1.18859 1.13563 1.24667 1.05314 0.90104 1.05214 1.19426 0.78586 0.96392 0.88975 0.92300 1.86499 1.22689 1.72467 1.56437 1.22313 1.38255 0.96381 1.11595 0.92807 1.25849 0.93474 1.05884 0.92049 1.70643 1.31306 1.14217 1.35993 0.83556 0.76123 0.74233 0.76376 1.20626 1.21321 1.21294 1.83687 1.47579 1.13905 1.14172 0.92337 0.91955 0.92219 0.92084 0.91554 0.92081 0.92218 0.91961 0.92335 0.81327 0.89639 0.89161 0.79709 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.35 37.16 0.31 -0.75 16 2 C 0.01 0.12 0.92 -155.66 -0.14 -0.02 16 3 C -0.15 -1.17 7.59 37.16 0.28 -0.89 16 4 C -0.14 -1.06 8.34 37.16 0.31 -0.75 16 5 C -0.23 -2.76 5.14 -36.02 -0.19 -2.94 16 6 C 0.05 0.74 10.59 -19.15 -0.20 0.53 16 7 N -0.48 -8.34 9.84 -14.79 -0.15 -8.48 16 8 C 0.02 0.36 7.46 51.89 0.39 0.75 16 9 S -0.02 -0.29 21.93 -107.50 -2.36 -2.65 16 10 C -0.10 -2.20 4.78 37.16 0.18 -2.02 16 11 C 0.23 5.63 2.47 -27.88 -0.07 5.57 16 12 H 0.06 1.59 8.01 -51.93 -0.42 1.17 16 13 O -0.58 -14.26 11.61 -35.23 -0.41 -14.67 16 14 C -0.65 -17.78 8.76 -34.44 -0.30 -18.08 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.04 1.04 5.40 -17.82 -0.10 0.95 16 17 N -0.89 -26.76 13.53 55.43 0.75 -26.01 16 18 Si 1.07 24.72 29.90 -169.99 -5.08 19.63 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 S 0.15 2.04 21.82 -107.50 -2.35 -0.30 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.46 7.99 -51.93 -0.41 0.05 16 26 H 0.06 0.49 8.00 -51.93 -0.42 0.08 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 7.99 -51.93 -0.42 0.08 16 29 H 0.06 0.46 7.99 -51.93 -0.41 0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.08 1.84 8.14 -51.91 -0.42 1.41 16 34 H 0.09 1.96 8.14 -51.91 -0.42 1.54 16 35 H 0.36 7.98 9.04 45.56 0.41 8.39 16 36 H 0.28 8.71 6.47 -40.82 -0.26 8.45 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -30.63 328.04 -8.69 -39.32 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.51 Total: 5.88 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 0.47 Total: -17.67 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.60 Total: -34.49 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.41 Total: -14.67 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -4.70 Total: -2.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.63 -8.69 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253426548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.150 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds