Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46637 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00199 * 2 1 3 5 5 C 1.50697 * 109.47356 * 120.00089 * 2 1 3 6 6 C 1.33333 * 125.94745 * 60.02384 * 5 2 1 7 7 N 1.32093 * 114.58409 * 179.76942 * 6 5 2 8 8 C 1.29758 * 116.86040 * 0.44621 * 7 6 5 9 9 S 1.76195 * 124.95802 * 179.84431 * 8 7 6 10 10 C 1.80999 * 99.99992 * 359.69147 * 9 8 7 11 11 C 1.53002 * 109.47312 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46986 * 60.00380 * 11 10 9 13 13 O 1.42898 * 109.47113 * 300.00340 * 11 10 9 14 14 C 1.50706 * 109.46931 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 21 21 H 1.48498 * 109.47295 * 60.00420 * 18 16 14 22 22 S 1.70966 * 110.08785 * 359.57605 * 8 7 6 23 23 H 1.09001 * 109.47297 * 299.99531 * 1 2 3 24 24 H 1.09001 * 109.47150 * 60.00225 * 1 2 3 25 25 H 1.08999 * 109.46528 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46686 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47167 * 299.99764 * 3 2 1 28 28 H 1.08993 * 109.47043 * 60.00497 * 3 2 1 29 29 H 1.09001 * 109.47481 * 299.99720 * 4 2 1 30 30 H 1.09001 * 109.47531 * 59.99810 * 4 2 1 31 31 H 1.08999 * 109.47244 * 179.97438 * 4 2 1 32 32 H 1.08001 * 122.70921 * 0.02562 * 6 5 2 33 33 H 1.09004 * 109.47282 * 60.00175 * 10 9 8 34 34 H 1.09004 * 109.47228 * 300.00254 * 10 9 8 35 35 H 0.96701 * 113.99881 * 299.99463 * 13 11 10 36 36 H 0.97000 * 119.99706 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.7849 -1.9790 1.5577 7 7 2.3432 -2.3740 2.6878 8 6 3.0437 -1.4939 3.3346 9 16 3.8748 -1.7881 4.8601 10 6 3.4288 -3.5211 5.1319 11 6 4.0573 -4.0107 6.4381 12 1 3.6891 -3.4064 7.2673 13 8 5.4790 -3.8918 6.3566 14 6 3.6853 -5.4534 6.6647 15 1 3.0633 -5.9696 5.9484 16 6 4.1392 -6.1143 7.7864 17 7 4.8962 -5.4855 8.6589 18 14 3.6788 -7.9028 8.0669 19 1 4.2876 -8.3776 9.3354 20 1 2.2013 -8.0263 8.1509 21 1 4.1810 -8.7262 6.9377 22 16 3.0489 -0.0092 2.4868 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 1.1803 -2.6323 0.9459 33 1 3.7974 -4.1254 4.3030 34 1 2.3443 -3.6118 5.1936 35 1 5.8760 -4.4045 5.6393 36 1 5.1355 -4.5569 8.5130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253426548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -56.889422 kcal Electronic energy + Delta-G solvation = -17847.040508 eV Core-core repulsion = 14968.404321 eV Total energy + Delta-G solvation = -2878.636186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80309 -38.33513 -37.85895 -34.35978 -31.82443 -30.60012 -28.31420 -28.15208 -26.92547 -26.55703 -23.50444 -22.26256 -20.73240 -19.58586 -18.94950 -17.67439 -16.88509 -16.52651 -16.26170 -15.85950 -15.68743 -15.37819 -15.08016 -14.87511 -14.76325 -14.50724 -13.70274 -13.51122 -13.19726 -13.17603 -12.67784 -12.62187 -12.61769 -12.37363 -12.24348 -12.02231 -11.97447 -11.89910 -11.64184 -11.38264 -10.74460 -10.67756 -10.65710 -10.31777 -10.25452 -8.68298 -8.61205 -6.54607 -0.46387 -0.12058 0.55037 0.74251 1.12905 1.53593 1.60487 1.69496 1.80706 2.54372 3.10579 3.48540 3.69426 3.82051 3.86476 3.98527 4.00171 4.08011 4.30995 4.48627 4.73853 4.74141 4.74626 4.83936 4.96627 4.98057 4.99085 5.10339 5.21515 5.24805 5.36421 5.38343 5.70484 6.03939 6.48395 6.53105 7.02092 7.40467 8.70099 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.035407 B = 0.003446 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.612770 B = 8123.205133 C = 8644.088013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 C -0.152 4.152 4 C -0.135 4.135 5 C -0.202 4.202 6 C 0.027 3.973 7 N -0.502 5.502 8 C -0.020 4.020 9 S -0.024 6.024 10 C -0.086 4.086 11 C 0.228 3.772 12 H 0.032 0.968 13 O -0.583 6.583 14 C -0.657 4.657 15 H 0.053 0.947 16 C -0.012 4.012 17 N -0.915 5.915 18 Si 1.118 2.882 19 H -0.283 1.283 20 H -0.270 1.270 21 H -0.268 1.268 22 S 0.201 5.799 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.190 0.810 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.367 0.633 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 13.236 -20.940 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 C -0.210 4.210 4 C -0.194 4.194 5 C -0.327 4.327 6 C -0.126 4.126 7 N -0.221 5.221 8 C -0.404 4.404 9 S 0.210 5.790 10 C -0.236 4.236 11 C 0.169 3.831 12 H 0.050 0.950 13 O -0.388 6.388 14 C -0.696 4.696 15 H 0.071 0.929 16 C -0.215 4.215 17 N -0.550 5.550 18 Si 0.939 3.061 19 H -0.208 1.208 20 H -0.196 1.196 21 H -0.193 1.193 22 S 0.455 5.545 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.206 0.794 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.214 0.786 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.357 13.558 -18.204 23.572 hybrid contribution -1.296 -0.641 -2.285 2.704 sum -7.653 12.916 -20.490 25.401 Atomic orbital electron populations 1.21913 0.91873 1.02683 1.02894 1.19199 0.96470 0.94842 0.88663 1.22042 1.01350 0.93981 1.03600 1.21911 1.01025 1.00547 0.95873 1.26436 1.05420 0.98048 1.02791 1.21860 1.02124 0.95023 0.93569 1.67025 1.11594 1.34392 1.09104 1.28487 1.06627 0.98764 1.06562 1.85807 1.61086 1.16135 1.15991 1.24119 1.04072 0.92546 1.02905 1.19179 0.78815 0.95125 0.90018 0.94980 1.86447 1.22573 1.72700 1.57116 1.22680 1.37722 0.97772 1.11469 0.92854 1.27354 0.92650 1.09698 0.91801 1.70781 1.33474 1.13612 1.37151 0.82940 0.76824 0.69664 0.76691 1.20845 1.19551 1.19338 1.83490 1.46635 1.11208 1.13186 0.93078 0.89618 0.92269 0.92416 0.89185 0.92418 0.92263 0.89628 0.93066 0.79371 0.90130 0.90171 0.78626 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.35 71.98 0.60 -1.06 16 2 C 0.01 0.16 0.92 -52.93 -0.05 0.11 16 3 C -0.15 -1.86 7.59 71.98 0.55 -1.31 16 4 C -0.14 -1.65 8.34 71.98 0.60 -1.05 16 5 C -0.20 -4.44 5.14 24.58 0.13 -4.31 16 6 C 0.03 0.71 10.59 83.54 0.88 1.60 16 7 N -0.50 -17.31 9.84 -200.69 -1.97 -19.29 16 8 C -0.02 -0.70 7.46 130.55 0.97 0.28 16 9 S -0.02 -0.92 21.93 -56.49 -1.24 -2.16 16 10 C -0.09 -3.80 4.78 71.98 0.34 -3.46 16 11 C 0.23 11.80 2.47 29.85 0.07 11.87 16 12 H 0.03 1.83 8.01 -2.39 -0.02 1.81 16 13 O -0.58 -29.75 11.61 -148.98 -1.73 -31.48 16 14 C -0.66 -36.88 8.76 25.60 0.22 -36.66 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 16 C -0.01 -0.69 5.40 84.66 0.46 -0.24 16 17 N -0.92 -56.44 13.53 21.45 0.29 -56.15 16 18 Si 1.12 49.62 29.90 68.60 2.05 51.68 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 22 S 0.20 5.07 21.82 -56.49 -1.23 3.84 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.74 7.99 -2.39 -0.02 0.73 16 26 H 0.06 0.76 8.00 -2.39 -0.02 0.74 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.76 7.99 -2.39 -0.02 0.74 16 29 H 0.06 0.74 7.99 -2.39 -0.02 0.72 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.37 16.82 9.04 -74.06 -0.67 16.15 16 36 H 0.27 17.08 6.47 -92.71 -0.60 16.48 16 Total: -1.00 -67.12 328.04 1.52 -65.60 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.57 Total: 22.17 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 4.78 Total: -34.22 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.68 Total: -75.44 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.73 Total: -31.48 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.68 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.47 Total: 1.68 kcal Total: -67.12 1.52 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253426548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.711 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds