Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99948 * 2 1 4 4 O 1.20827 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00069 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47307 * 180.02562 * 5 3 2 7 7 C 1.36945 * 119.99891 * 264.01293 * 6 5 3 8 8 H 1.07998 * 120.00114 * 196.23077 * 7 6 5 9 9 C 1.38810 * 119.99946 * 16.22005 * 7 6 5 10 10 N 1.31623 * 119.99810 * 22.12918 * 9 7 6 11 11 Si 1.86795 * 120.00203 * 202.11928 * 9 7 6 12 12 H 1.48510 * 109.46942 * 90.00675 * 11 9 7 13 13 H 1.48496 * 109.47505 * 210.00555 * 11 9 7 14 14 H 1.48497 * 109.47175 * 330.01161 * 11 9 7 15 15 C 1.46499 * 120.00314 * 84.00907 * 6 5 3 16 16 C 1.53005 * 109.47060 * 90.00022 * 15 6 5 17 17 N 1.46499 * 109.47060 * 180.02562 * 16 15 6 18 18 C 1.35048 * 126.03478 * 125.00007 * 17 16 15 19 19 C 1.35373 * 107.72767 * 179.97438 * 18 17 16 20 20 Cl 1.73599 * 126.04517 * 179.97438 * 19 18 17 21 21 C 1.39933 * 107.90474 * 359.97438 * 19 18 17 22 22 N 1.30842 * 108.21418 * 359.75781 * 21 19 18 23 23 H 1.09002 * 109.46797 * 60.00210 * 1 2 3 24 24 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47349 * 299.99744 * 1 2 3 26 26 H 1.09005 * 109.46739 * 60.00550 * 5 3 2 27 27 H 1.08996 * 109.47191 * 300.00665 * 5 3 2 28 28 H 0.96997 * 120.00020 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.46874 * 329.99903 * 15 6 5 30 30 H 1.08995 * 109.47122 * 210.00240 * 15 6 5 31 31 H 1.08998 * 109.46930 * 300.00425 * 16 15 6 32 32 H 1.09004 * 109.46643 * 60.00175 * 16 15 6 33 33 H 1.08001 * 126.13688 * 359.94098 * 18 17 16 34 34 H 1.08001 * 125.88659 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2949 3.3015 -1.1782 8 1 4.8432 4.2319 -1.1691 9 6 3.9079 2.7358 -2.3852 10 7 2.9058 1.8831 -2.4211 11 14 4.8090 3.1847 -3.9587 12 1 5.9407 2.2456 -4.1662 13 1 3.8734 3.0939 -5.1082 14 1 5.3297 4.5713 -3.8525 15 6 4.0620 3.4194 1.2630 16 6 5.4657 3.2701 1.8533 17 7 5.5457 4.0093 3.1156 18 6 5.9221 3.5036 4.3099 19 6 5.8632 4.5053 5.2187 20 17 6.2484 4.3772 6.9065 21 6 5.4371 5.6622 4.5568 22 7 5.2519 5.3671 3.2956 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.9564 0.7806 -0.8893 27 1 3.9557 0.7809 0.8907 28 1 2.6351 1.4881 -3.2646 29 1 3.3286 3.0217 1.9645 30 1 3.8551 4.4738 1.0799 31 1 5.6725 2.2157 2.0364 32 1 6.1990 3.6678 1.1517 33 1 6.2166 2.4831 4.5052 34 1 5.2900 6.6322 5.0084 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459337362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = -1.119275 kcal Electronic energy + Delta-G solvation = -20506.114604 eV Core-core repulsion = 17081.559872 eV Total energy + Delta-G solvation = -3424.554732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17589 -40.84902 -38.10722 -37.30175 -36.61944 -34.79355 -33.00377 -31.14866 -30.13879 -28.85990 -27.68955 -25.68322 -23.35822 -22.10922 -21.82427 -21.41690 -18.87660 -18.41949 -18.03473 -17.36180 -16.95233 -16.63918 -16.33337 -15.81488 -15.49339 -15.33104 -14.89610 -14.34094 -14.19563 -14.06391 -13.91431 -13.55001 -13.18841 -12.85251 -12.76060 -12.63445 -12.36220 -12.33676 -12.18844 -11.99310 -11.86778 -11.43590 -11.38454 -11.16512 -10.63849 -10.51348 -9.40212 -9.03867 -8.00334 -5.36476 0.84086 1.05150 1.48961 1.51083 1.58957 1.66088 1.86995 1.94635 2.29583 2.52644 3.20262 3.40854 3.72571 3.91223 4.08757 4.20460 4.36122 4.40459 4.43624 4.48643 4.55525 4.66069 4.66871 4.84927 4.89634 5.09872 5.16162 5.44506 5.59843 5.89506 5.94229 6.16811 6.62561 6.96414 7.42997 7.70048 8.07143 9.08252 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.004337 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.135593 B = 6455.095953 C = 7705.181867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.383 6.383 3 C 0.463 3.537 4 O -0.549 6.549 5 C 0.186 3.814 6 N -0.574 5.574 7 C -0.267 4.267 8 H 0.079 0.921 9 C -0.041 4.041 10 N -0.927 5.927 11 Si 0.972 3.028 12 H -0.275 1.275 13 H -0.304 1.304 14 H -0.276 1.276 15 C 0.150 3.850 16 C 0.126 3.874 17 N -0.360 5.360 18 C 0.079 3.921 19 C -0.205 4.205 20 Cl -0.040 7.040 21 C 0.055 3.945 22 N -0.323 5.323 23 H 0.033 0.967 24 H 0.128 0.872 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.251 0.749 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.215 0.785 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -2.968 13.729 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.300 6.300 3 C 0.305 3.695 4 O -0.437 6.437 5 C 0.057 3.943 6 N -0.294 5.294 7 C -0.396 4.396 8 H 0.097 0.903 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.800 3.200 12 H -0.201 1.201 13 H -0.231 1.231 14 H -0.201 1.201 15 C 0.023 3.977 16 C 0.004 3.996 17 N -0.142 5.142 18 C -0.069 4.069 19 C -0.244 4.244 20 Cl -0.012 7.012 21 C -0.131 4.131 22 N -0.144 5.144 23 H 0.052 0.948 24 H 0.146 0.854 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.232 0.768 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.164 -2.373 12.417 13.656 hybrid contribution -0.248 0.270 -0.331 0.494 sum 4.916 -2.103 12.086 13.216 Atomic orbital electron populations 1.23173 0.77515 1.04281 1.00661 1.86499 1.23201 1.35209 1.85091 1.25881 0.94338 0.80189 0.69067 1.90462 1.67762 1.38008 1.47498 1.20510 0.84601 0.86189 1.03001 1.44095 1.75084 1.07758 1.02434 1.19528 1.28834 1.07417 0.83796 0.90344 1.25527 0.97164 1.00355 1.00608 1.70027 1.26013 1.35214 1.26001 0.85205 0.77831 0.78150 0.78780 1.20063 1.23129 1.20105 1.20845 0.93646 0.95994 0.87197 1.22529 1.00194 0.96400 0.80477 1.48736 1.49988 1.06883 1.08563 1.22867 0.98812 1.01057 0.84200 1.20846 1.19934 0.95583 0.88007 1.98307 1.93439 1.98212 1.11195 1.24292 0.98373 1.00311 0.90097 1.77525 1.24101 0.93934 1.18862 0.94766 0.85374 0.93017 0.88098 0.88392 0.93922 0.94377 0.94539 0.85546 0.89681 0.76821 0.77459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.46 16 2 O -0.38 -15.76 10.57 -51.39 -0.54 -16.30 16 3 C 0.46 21.87 6.17 71.24 0.44 22.31 16 4 O -0.55 -30.29 15.88 21.96 0.35 -29.94 16 5 C 0.19 7.95 5.48 85.63 0.47 8.42 16 6 N -0.57 -26.12 2.03 -706.36 -1.44 -27.56 16 7 C -0.27 -13.65 9.66 84.03 0.81 -12.83 16 8 H 0.08 4.00 7.92 -2.91 -0.02 3.97 16 9 C -0.04 -2.14 4.86 84.86 0.41 -1.73 16 10 N -0.93 -51.49 9.31 21.65 0.20 -51.29 16 11 Si 0.97 43.06 29.61 68.60 2.03 45.10 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.15 5.90 5.83 86.38 0.50 6.40 16 16 C 0.13 3.71 6.83 86.38 0.59 4.30 16 17 N -0.36 -10.26 3.68 -347.92 -1.28 -11.54 16 18 C 0.08 1.78 11.43 83.54 0.95 2.73 16 19 C -0.20 -4.74 6.65 22.02 0.15 -4.59 16 20 Cl -0.04 -0.78 29.30 -2.72 -0.08 -0.86 16 21 C 0.06 1.42 12.02 85.25 1.02 2.44 16 22 N -0.32 -10.33 12.42 -56.98 -0.71 -11.04 16 23 H 0.03 1.27 8.13 -2.39 -0.02 1.25 16 24 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 25 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 26 H 0.10 4.69 6.35 -2.38 -0.02 4.67 16 27 H 0.10 3.22 8.11 -2.39 -0.02 3.20 16 28 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.04 1.51 8.07 -2.39 -0.02 1.49 16 30 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 31 H 0.13 2.86 8.07 -2.39 -0.02 2.84 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.21 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -68.74 317.17 6.20 -62.55 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.11 Total: 10.97 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 6.55 Total: 29.91 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.22 Total: -101.42 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.19 Total: -46.24 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -68.74 6.20 -62.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459337362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.426 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds