Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99890 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00410 * 3 2 1 6 6 H 1.48498 * 109.47011 * 150.00031 * 3 2 1 7 7 C 1.38678 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99659 * 180.27690 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72324 * 9 7 2 11 11 N 1.31431 * 126.50709 * 359.68535 * 10 9 7 12 12 N 1.28521 * 109.85246 * 179.82266 * 11 10 9 13 13 C 1.30500 * 110.12769 * 0.45645 * 12 11 10 14 14 C 1.50699 * 126.32310 * 179.75158 * 13 12 11 15 15 C 1.53008 * 117.49918 * 8.59045 * 14 13 12 16 16 C 1.53002 * 59.99893 * 252.51163 * 15 14 13 17 17 N 1.36697 * 107.35294 * 359.72408 * 13 12 11 18 18 C 1.40199 * 127.16240 * 179.97438 * 17 13 12 19 19 C 1.38827 * 120.06510 * 64.74070 * 18 17 13 20 20 C 1.38130 * 119.93187 * 179.68154 * 19 18 17 21 21 C 1.38284 * 120.06296 * 0.62246 * 20 19 18 22 22 C 1.38281 * 120.12994 * 359.67318 * 21 20 19 23 23 C 1.38112 * 120.06866 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99788 * 359.97438 * 1 2 3 25 25 H 1.09002 * 115.55434 * 154.30239 * 14 13 12 26 26 H 1.08991 * 117.49870 * 0.02562 * 15 14 13 27 27 H 1.09000 * 117.49585 * 145.02743 * 15 14 13 28 28 H 1.09004 * 117.50243 * 252.50612 * 16 15 14 29 29 H 1.09004 * 117.51898 * 107.48518 * 16 15 14 30 30 H 1.08001 * 120.03615 * 359.97438 * 19 18 17 31 31 H 1.08000 * 119.96873 * 180.34243 * 20 19 18 32 32 H 1.07995 * 119.93155 * 179.70245 * 21 20 19 33 33 H 1.08001 * 119.96363 * 180.02562 * 22 21 20 34 34 H 1.08004 * 120.03455 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0098 -1.2010 -0.0005 8 1 1.4697 -2.1363 -0.0005 9 16 3.7717 -1.2010 0.0068 10 6 4.0777 -2.9362 0.0115 11 7 3.1731 -3.8897 0.0154 12 7 3.7497 -5.0383 0.0143 13 6 5.0463 -4.8900 0.0195 14 6 6.0711 -5.9948 0.0254 15 6 5.5686 -7.4257 -0.1772 16 6 6.0496 -6.9720 1.2025 17 7 5.3030 -3.5473 0.0179 18 6 6.5595 -2.9253 0.0224 19 6 7.4153 -3.0785 -1.0599 20 6 8.6499 -2.4591 -1.0554 21 6 9.0389 -1.6976 0.0313 22 6 8.1910 -1.5483 1.1134 23 6 6.9529 -2.1601 1.1120 24 1 -0.4850 0.8400 0.0004 25 1 7.0423 -5.7375 -0.3974 26 1 4.4968 -7.5679 -0.3152 27 1 6.2091 -8.1100 -0.7335 28 1 7.0066 -7.3579 1.5539 29 1 5.2945 -6.8155 1.9729 30 1 7.1141 -3.6775 -1.9067 31 1 9.3139 -2.5734 -1.8995 32 1 10.0066 -1.2182 0.0346 33 1 8.4974 -0.9526 1.9606 34 1 6.2909 -2.0428 1.9573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003520135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = 130.543210 kcal Electronic energy + Delta-G solvation = -19557.976687 eV Core-core repulsion = 16584.316990 eV Total energy + Delta-G solvation = -2973.659698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.079 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39434 -39.19711 -37.05618 -34.48547 -32.61146 -31.17441 -29.78622 -29.58386 -25.86362 -24.22253 -23.31551 -22.66613 -22.41196 -21.59752 -19.90504 -18.51400 -17.38461 -16.47251 -16.00680 -15.62915 -15.48997 -15.08812 -14.61683 -14.33658 -14.19858 -13.60850 -13.02176 -13.01861 -12.33235 -11.97782 -11.79376 -11.54713 -11.46665 -11.28418 -11.18845 -10.97161 -10.86269 -10.55073 -10.26248 -10.06829 -9.91225 -9.50291 -9.15161 -8.98617 -8.90072 -8.73901 -7.07220 -6.41255 -4.21244 0.96482 1.19394 2.13002 2.16566 2.97231 3.12848 3.19611 3.30372 3.36232 3.53316 3.96577 4.08633 4.37296 4.47465 4.73882 4.76087 4.80680 4.90945 4.93729 4.96620 5.06225 5.21153 5.33470 5.47264 5.60826 5.72588 5.80542 5.90725 6.02455 6.14598 6.18106 6.21173 6.29794 6.40495 6.57275 6.66713 7.41191 7.84311 8.63652 8.97260 9.34096 10.67846 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.006399 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.815178 B = 4374.913172 C = 5877.403105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.102 3.898 3 Si 0.842 3.158 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.121 0.879 9 S 0.060 5.940 10 C 0.193 3.807 11 N -0.288 5.288 12 N -0.283 5.283 13 C 0.185 3.815 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.161 4.161 17 N -0.437 5.437 18 C 0.131 3.869 19 C -0.108 4.108 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.099 4.099 24 H 0.274 0.726 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.612 -5.740 0.608 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.109 4.109 3 Si 0.666 3.334 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.164 1.164 7 C -0.675 4.675 8 H 0.139 0.861 9 S 0.292 5.708 10 C -0.177 4.177 11 N -0.131 5.131 12 N -0.122 5.122 13 C -0.083 4.083 14 C -0.097 4.097 15 C -0.189 4.189 16 C -0.200 4.200 17 N -0.131 5.131 18 C 0.039 3.961 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.680 -5.348 0.602 20.403 hybrid contribution 0.466 0.556 -0.073 0.729 sum 20.146 -4.792 0.530 20.715 Atomic orbital electron populations 1.69915 1.05620 1.27850 1.46204 1.24653 0.94569 0.98300 0.93362 0.87011 0.81710 0.84461 0.80216 1.18679 1.18876 1.16392 1.22549 0.86392 0.99464 1.59084 0.86123 1.82901 1.12644 0.86963 1.88328 1.27681 0.81617 1.03821 1.04550 1.74859 1.23596 0.93068 1.21573 1.73920 1.02250 1.18780 1.17226 1.23767 0.94132 0.82416 1.07969 1.19943 0.96238 0.87351 1.06126 1.22998 1.03137 0.93823 0.98919 1.23043 1.03225 1.01636 0.92062 1.43667 1.04731 1.05800 1.58883 1.17577 0.84354 0.98489 0.95654 1.21178 0.94309 1.00454 0.96820 1.21018 0.95663 0.97335 0.98759 1.21261 0.99832 0.98426 0.93663 1.21059 0.93201 0.99171 0.99005 1.21271 0.96793 0.96489 0.97263 0.91503 0.86487 0.87202 0.88171 0.88211 0.88251 0.85420 0.85181 0.85452 0.85033 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.57 13.97 55.48 0.78 -24.79 16 2 C 0.10 2.89 5.50 -17.47 -0.10 2.79 16 3 Si 0.84 19.79 27.74 -169.99 -4.71 15.07 16 4 H -0.26 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.24 -5.33 6.73 56.52 0.38 -4.95 16 7 C -0.53 -15.30 9.92 30.89 0.31 -14.99 16 8 H 0.12 3.92 7.16 -52.49 -0.38 3.54 16 9 S 0.06 1.46 19.55 -107.50 -2.10 -0.64 16 10 C 0.19 4.59 8.00 -87.85 -0.70 3.88 16 11 N -0.29 -7.47 11.04 30.78 0.34 -7.13 16 12 N -0.28 -6.43 11.79 33.01 0.39 -6.04 16 13 C 0.19 3.51 7.52 -153.89 -1.16 2.35 16 14 C -0.08 -1.03 5.97 -91.77 -0.55 -1.58 16 15 C -0.15 -1.76 10.15 -26.73 -0.27 -2.03 16 16 C -0.16 -1.86 10.23 -26.73 -0.27 -2.14 16 17 N -0.44 -8.50 2.84 -57.59 -0.16 -8.67 16 18 C 0.13 2.06 5.33 -83.59 -0.45 1.62 16 19 C -0.11 -1.39 9.31 -39.40 -0.37 -1.76 16 20 C -0.11 -1.09 10.04 -39.60 -0.40 -1.49 16 21 C -0.11 -1.07 10.04 -39.55 -0.40 -1.46 16 22 C -0.11 -1.14 10.04 -39.61 -0.40 -1.54 16 23 C -0.10 -1.40 9.93 -39.41 -0.39 -1.79 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.12 1.36 7.54 -51.93 -0.39 0.96 16 26 H 0.11 1.49 7.92 -51.93 -0.41 1.08 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -33.41 315.50 -9.58 -42.98 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.72 Total: 2.61 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -5.14 Total: -18.14 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 1.34 Total: -46.63 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.71 Total: 15.07 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.10 Total: -0.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.41 -9.58 -42.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003520135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.527 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds