Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99890 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00410 * 3 2 1 6 6 H 1.48498 * 109.47011 * 150.00031 * 3 2 1 7 7 C 1.38678 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99659 * 180.27690 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72324 * 9 7 2 11 11 N 1.31431 * 126.50709 * 359.68535 * 10 9 7 12 12 N 1.28521 * 109.85246 * 179.82266 * 11 10 9 13 13 C 1.30500 * 110.12769 * 0.45645 * 12 11 10 14 14 C 1.50699 * 126.32310 * 179.75158 * 13 12 11 15 15 C 1.53008 * 117.49918 * 8.59045 * 14 13 12 16 16 C 1.53002 * 59.99893 * 252.51163 * 15 14 13 17 17 N 1.36697 * 107.35294 * 359.72408 * 13 12 11 18 18 C 1.40199 * 127.16240 * 179.97438 * 17 13 12 19 19 C 1.38827 * 120.06510 * 64.74070 * 18 17 13 20 20 C 1.38130 * 119.93187 * 179.68154 * 19 18 17 21 21 C 1.38284 * 120.06296 * 0.62246 * 20 19 18 22 22 C 1.38281 * 120.12994 * 359.67318 * 21 20 19 23 23 C 1.38112 * 120.06866 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99788 * 359.97438 * 1 2 3 25 25 H 1.09002 * 115.55434 * 154.30239 * 14 13 12 26 26 H 1.08991 * 117.49870 * 0.02562 * 15 14 13 27 27 H 1.09000 * 117.49585 * 145.02743 * 15 14 13 28 28 H 1.09004 * 117.50243 * 252.50612 * 16 15 14 29 29 H 1.09004 * 117.51898 * 107.48518 * 16 15 14 30 30 H 1.08001 * 120.03615 * 359.97438 * 19 18 17 31 31 H 1.08000 * 119.96873 * 180.34243 * 20 19 18 32 32 H 1.07995 * 119.93155 * 179.70245 * 21 20 19 33 33 H 1.08001 * 119.96363 * 180.02562 * 22 21 20 34 34 H 1.08004 * 120.03455 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0098 -1.2010 -0.0005 8 1 1.4697 -2.1363 -0.0005 9 16 3.7717 -1.2010 0.0068 10 6 4.0777 -2.9362 0.0115 11 7 3.1731 -3.8897 0.0154 12 7 3.7497 -5.0383 0.0143 13 6 5.0463 -4.8900 0.0195 14 6 6.0711 -5.9948 0.0254 15 6 5.5686 -7.4257 -0.1772 16 6 6.0496 -6.9720 1.2025 17 7 5.3030 -3.5473 0.0179 18 6 6.5595 -2.9253 0.0224 19 6 7.4153 -3.0785 -1.0599 20 6 8.6499 -2.4591 -1.0554 21 6 9.0389 -1.6976 0.0313 22 6 8.1910 -1.5483 1.1134 23 6 6.9529 -2.1601 1.1120 24 1 -0.4850 0.8400 0.0004 25 1 7.0423 -5.7375 -0.3974 26 1 4.4968 -7.5679 -0.3152 27 1 6.2091 -8.1100 -0.7335 28 1 7.0066 -7.3579 1.5539 29 1 5.2945 -6.8155 1.9729 30 1 7.1141 -3.6775 -1.9067 31 1 9.3139 -2.5734 -1.8995 32 1 10.0066 -1.2182 0.0346 33 1 8.4974 -0.9526 1.9606 34 1 6.2909 -2.0428 1.9573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003520135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = 111.169579 kcal Electronic energy + Delta-G solvation = -19558.816791 eV Core-core repulsion = 16584.316990 eV Total energy + Delta-G solvation = -2974.499801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.00939 -40.18975 -38.12386 -35.84588 -34.79333 -32.08832 -31.41783 -30.69961 -28.05633 -25.56428 -24.63985 -23.62515 -23.39612 -22.97277 -21.21733 -20.18769 -18.96433 -17.47564 -17.43931 -17.28206 -17.03594 -16.69735 -15.76035 -15.39646 -15.27197 -14.97942 -14.48560 -14.03341 -13.86159 -13.44098 -13.18322 -13.15058 -12.94731 -12.47956 -12.44189 -12.33903 -12.26058 -11.92991 -11.86984 -11.57713 -11.43651 -11.30442 -11.01538 -10.65144 -10.03193 -9.82794 -8.99912 -8.57708 -6.40572 -0.05523 0.31037 0.37650 0.64611 1.26178 1.29480 1.38529 1.63439 1.67857 2.12458 2.33562 2.64003 2.79034 2.88392 3.21194 3.70575 3.84529 3.87876 3.89160 4.04928 4.18429 4.22175 4.40104 4.41316 4.56241 4.69369 4.73043 4.84893 4.93447 4.98368 5.11526 5.24971 5.34456 5.35634 5.46034 5.68521 5.76169 6.09615 6.26285 6.77618 7.62826 8.56598 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.006399 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.815178 B = 4374.913172 C = 5877.403105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.250 1.250 5 H -0.248 1.248 6 H -0.219 1.219 7 C -0.558 4.558 8 H 0.065 0.935 9 S 0.095 5.905 10 C 0.167 3.833 11 N -0.340 5.340 12 N -0.329 5.329 13 C 0.209 3.791 14 C -0.097 4.097 15 C -0.140 4.140 16 C -0.145 4.145 17 N -0.425 5.425 18 C 0.084 3.916 19 C -0.113 4.113 20 C -0.097 4.097 21 C -0.095 4.095 22 C -0.101 4.101 23 C -0.118 4.118 24 H 0.282 0.718 25 H 0.147 0.853 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.195 -4.880 0.260 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.159 4.159 3 Si 0.731 3.269 4 H -0.174 1.174 5 H -0.171 1.171 6 H -0.142 1.142 7 C -0.706 4.706 8 H 0.084 0.916 9 S 0.325 5.675 10 C -0.206 4.206 11 N -0.183 5.183 12 N -0.167 5.167 13 C -0.060 4.060 14 C -0.117 4.117 15 C -0.178 4.178 16 C -0.183 4.183 17 N -0.117 5.117 18 C -0.006 4.006 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.138 4.138 24 H 0.092 0.908 25 H 0.165 0.835 26 H 0.101 0.899 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.185 0.815 32 H 0.188 0.812 33 H 0.177 0.823 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 25.294 -4.524 0.259 25.697 hybrid contribution -1.109 0.080 0.044 1.113 sum 24.185 -4.444 0.304 24.592 Atomic orbital electron populations 1.70041 1.07818 1.29583 1.47120 1.25733 0.95556 1.02511 0.92104 0.85959 0.81053 0.78651 0.81220 1.17383 1.17140 1.14229 1.22574 0.89852 0.98008 1.60180 0.91643 1.82090 1.07797 0.87891 1.89703 1.27568 0.83449 1.03424 1.06125 1.74737 1.26059 0.94639 1.22817 1.73823 1.04462 1.17971 1.20430 1.24846 0.94119 0.83665 1.03368 1.20345 0.95990 0.86466 1.08925 1.23108 1.02456 0.92742 0.99483 1.23137 1.04423 0.99641 0.91105 1.43823 1.05051 1.05704 1.57072 1.18021 0.83375 1.01118 0.98042 1.21302 0.95110 1.01069 0.95794 1.21465 0.94476 0.95615 0.99991 1.21785 1.00803 0.96617 0.92098 1.21411 0.91686 0.98288 1.00544 1.21289 0.98339 0.97667 0.96516 0.90787 0.83545 0.89860 0.84150 0.84165 0.90615 0.85487 0.81491 0.81229 0.82334 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.68 13.97 21.63 0.30 -56.38 16 2 C 0.05 2.81 5.50 84.83 0.47 3.27 16 3 Si 0.91 41.10 27.74 68.60 1.90 43.00 16 4 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.22 -9.05 6.73 99.48 0.67 -8.38 16 7 C -0.56 -34.58 9.92 67.93 0.67 -33.91 16 8 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 9 S 0.09 4.78 19.55 -56.49 -1.10 3.67 16 10 C 0.17 8.41 8.00 179.38 1.43 9.85 16 11 N -0.34 -19.11 11.04 -56.53 -0.62 -19.73 16 12 N -0.33 -15.99 11.79 -49.46 -0.58 -16.57 16 13 C 0.21 8.16 7.52 137.59 1.03 9.19 16 14 C -0.10 -2.49 5.97 -11.54 -0.07 -2.56 16 15 C -0.14 -3.02 10.15 30.60 0.31 -2.71 16 16 C -0.14 -3.05 10.23 30.60 0.31 -2.74 16 17 N -0.42 -17.03 2.84 -336.12 -0.95 -17.98 16 18 C 0.08 2.58 5.33 38.09 0.20 2.79 16 19 C -0.11 -2.63 9.31 22.39 0.21 -2.42 16 20 C -0.10 -1.45 10.04 22.26 0.22 -1.22 16 21 C -0.10 -1.24 10.04 22.29 0.22 -1.02 16 22 C -0.10 -1.80 10.04 22.25 0.22 -1.57 16 23 C -0.12 -3.23 9.93 22.38 0.22 -3.00 16 24 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 25 H 0.15 2.92 7.54 -2.39 -0.02 2.91 16 26 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 27 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -82.69 315.50 5.49 -77.21 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.08 Total: 12.84 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 5.47 Total: -26.05 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -1.86 Total: -110.67 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.90 Total: 43.00 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.10 Total: 3.67 kcal Total: -82.69 5.49 -77.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003520135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.379 kcal (2) G-P(sol) polarization free energy of solvation -82.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds