Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00325 * 2 1 4 4 C 1.53001 * 109.47371 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46917 * 65.00051 * 4 3 2 6 6 C 1.36942 * 120.00115 * 264.48581 * 5 4 3 7 7 H 1.07993 * 120.00205 * 145.70113 * 6 5 4 8 8 C 1.38817 * 119.99972 * 325.70281 * 6 5 4 9 9 N 1.31621 * 119.99621 * 338.03058 * 8 6 5 10 10 Si 1.86792 * 120.00207 * 158.02623 * 8 6 5 11 11 H 1.48504 * 109.47156 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47056 * 119.99565 * 10 8 6 13 13 H 1.48496 * 109.47440 * 239.99880 * 10 8 6 14 14 C 1.46494 * 119.99971 * 84.48861 * 5 4 3 15 15 C 1.50706 * 109.47053 * 89.99922 * 14 5 4 16 16 C 1.38242 * 119.97976 * 260.01866 * 15 14 5 17 17 C 1.38182 * 120.03807 * 179.97438 * 16 15 14 18 18 C 1.38486 * 119.99955 * 0.03035 * 17 16 15 19 19 F 1.35108 * 120.01560 * 179.97438 * 18 17 16 20 20 C 1.38417 * 119.96545 * 359.69265 * 18 17 16 21 21 C 1.38337 * 119.95490 * 0.55942 * 20 18 17 22 22 Cl 1.73607 * 119.99524 * 179.73903 * 21 20 18 23 23 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46514 * 299.99901 * 1 2 3 25 25 H 1.08997 * 109.47562 * 59.99559 * 1 2 3 26 26 H 1.09006 * 109.46709 * 59.99974 * 3 2 1 27 27 H 1.09004 * 109.47066 * 300.00469 * 3 2 1 28 28 H 1.09000 * 109.46833 * 305.00368 * 4 3 2 29 29 H 1.09001 * 109.46796 * 185.00412 * 4 3 2 30 30 H 0.97002 * 119.99615 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.47328 * 330.00096 * 14 5 4 32 32 H 1.09006 * 109.47358 * 209.99681 * 14 5 4 33 33 H 1.08003 * 119.98186 * 0.02562 * 16 15 14 34 34 H 1.07996 * 120.00024 * 180.02562 * 17 16 15 35 35 H 1.07999 * 120.02143 * 180.32523 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2055 -0.7846 -1.3049 7 1 3.9868 -1.3352 -2.2078 8 6 4.7197 -1.4444 -0.1970 9 7 5.3806 -0.7720 0.7213 10 14 4.4734 -3.2865 -0.0095 11 1 3.7033 -3.8036 -1.1692 12 1 5.7960 -3.9597 0.0455 13 1 3.7258 -3.5610 1.2438 14 6 4.1700 1.3873 -2.4490 15 6 5.5916 1.8860 -2.4902 16 6 5.8843 3.1729 -2.0790 17 6 7.1874 3.6313 -2.1157 18 6 8.2009 2.8014 -2.5653 19 9 9.4750 3.2494 -2.6018 20 6 7.9087 1.5109 -2.9716 21 6 6.6028 1.0555 -2.9391 22 17 6.2342 -0.5607 -3.4549 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5681 0.8409 29 1 3.9786 2.1765 0.0890 30 1 5.7402 -1.2331 1.4953 31 1 3.4877 2.2367 -2.4205 32 1 3.9689 0.7893 -3.3380 33 1 5.0943 3.8203 -1.7280 34 1 7.4155 4.6366 -1.7939 35 1 8.6991 0.8613 -3.3174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069584313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -45.922464 kcal Electronic energy + Delta-G solvation = -21065.454748 eV Core-core repulsion = 17619.037243 eV Total energy + Delta-G solvation = -3446.417506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.53401 -38.75682 -37.18573 -35.57643 -35.26568 -31.82692 -30.49173 -30.35127 -28.40717 -25.69366 -25.40208 -23.16682 -22.56254 -21.40529 -19.97179 -17.35679 -16.83102 -15.99676 -15.80121 -15.31761 -15.22572 -15.02508 -14.57105 -14.06229 -13.91837 -13.69477 -13.48600 -13.31728 -13.01385 -12.26367 -11.98328 -11.74545 -11.37309 -11.08268 -10.90351 -10.82558 -10.77814 -10.62515 -10.47562 -10.27127 -10.02276 -9.91402 -9.58920 -8.87603 -8.44533 -8.37009 -7.93788 -6.60095 -5.72323 -3.18023 1.57403 1.60429 2.88739 3.44765 3.52818 3.55165 3.97413 4.58874 4.65224 4.70081 5.15803 5.25335 5.39860 5.47901 5.59432 5.70312 5.75249 5.77847 5.98000 6.03356 6.10296 6.20014 6.24134 6.34652 6.41387 6.52398 6.58727 6.67282 6.78312 7.00172 7.25224 7.65652 7.91321 8.03339 8.55975 9.21786 9.85266 10.37408 11.30954 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.006763 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.079382 B = 4139.259444 C = 4996.012626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.560 5.560 6 C -0.220 4.220 7 H 0.064 0.936 8 C 0.017 3.983 9 N -0.888 5.888 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.171 3.829 15 C -0.080 4.080 16 C -0.086 4.086 17 C -0.154 4.154 18 C 0.082 3.918 19 F -0.147 7.147 20 C -0.151 4.151 21 C 0.019 3.981 22 Cl -0.043 7.043 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.110 0.890 29 H 0.038 0.962 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 7.358 -5.104 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.032 4.032 4 C 0.016 3.984 5 N -0.277 5.277 6 C -0.349 4.349 7 H 0.082 0.918 8 C -0.182 4.182 9 N -0.531 5.531 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.045 3.955 15 C -0.085 4.085 16 C -0.105 4.105 17 C -0.174 4.174 18 C 0.062 3.938 19 F -0.126 7.126 20 C -0.171 4.171 21 C -0.009 4.009 22 Cl -0.014 7.014 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.832 6.951 -4.989 8.750 hybrid contribution 0.073 -0.714 0.373 0.809 sum -1.759 6.237 -4.616 7.957 Atomic orbital electron populations 1.22630 0.84152 1.01510 0.98421 1.88201 1.16632 1.27741 1.94834 1.23392 0.98763 0.84121 0.96926 1.21075 0.87312 0.97068 0.92986 1.43986 1.73788 1.04009 1.05951 1.18973 1.34589 0.81788 0.99594 0.91789 1.24934 0.96840 0.97288 0.99169 1.69961 1.35622 1.35061 1.12483 0.86397 0.77177 0.86372 0.77887 1.20210 1.22150 1.21573 1.20172 0.87779 0.94434 0.93117 1.21114 1.00017 0.92102 0.95297 1.20734 0.95420 0.95154 0.99215 1.21015 0.92771 1.00158 1.03409 1.17316 0.78772 0.93314 1.04431 1.91447 1.36897 1.89495 1.94751 1.20857 0.96515 0.95049 1.04686 1.20375 0.92833 0.87723 1.00005 1.98378 1.94553 1.19911 1.88510 0.90715 0.95540 0.95256 0.95590 0.95427 0.87224 0.94347 0.93820 0.93438 0.91966 0.85291 0.85397 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.50 10.44 -35.23 -0.37 -7.87 16 3 C 0.05 0.90 6.28 37.16 0.23 1.13 16 4 C 0.14 3.12 5.63 -4.04 -0.02 3.10 16 5 N -0.56 -12.79 2.39 -174.61 -0.42 -13.21 16 6 C -0.22 -5.60 7.09 -15.05 -0.11 -5.70 16 7 H 0.06 1.68 7.38 -52.49 -0.39 1.29 16 8 C 0.02 0.46 4.92 -17.43 -0.09 0.37 16 9 N -0.89 -24.82 11.35 55.49 0.63 -24.19 16 10 Si 0.89 22.04 29.61 -169.99 -5.03 17.01 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.17 3.32 5.41 -5.19 -0.03 3.29 16 15 C -0.08 -1.51 5.47 -104.58 -0.57 -2.09 16 16 C -0.09 -1.40 9.66 -39.60 -0.38 -1.79 16 17 C -0.15 -2.43 10.03 -39.51 -0.40 -2.82 16 18 C 0.08 1.39 7.30 -39.42 -0.29 1.11 16 19 F -0.15 -2.44 17.27 2.25 0.04 -2.40 16 20 C -0.15 -2.72 9.81 -39.48 -0.39 -3.10 16 21 C 0.02 0.36 6.31 -39.51 -0.25 0.11 16 22 Cl -0.04 -0.85 24.79 -51.86 -1.29 -2.14 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.11 2.83 5.36 -51.93 -0.28 2.56 16 29 H 0.04 0.79 8.11 -51.93 -0.42 0.36 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 32 H 0.06 1.22 7.25 -51.93 -0.38 0.84 16 33 H 0.13 1.79 8.04 -52.48 -0.42 1.37 16 34 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -28.68 315.25 -7.25 -35.93 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.39 Total: -3.08 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.17 Total: -4.80 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.21 Total: -37.40 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.37 Total: -7.87 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.29 Total: -2.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.68 -7.25 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069584313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.994 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds