Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00325 * 2 1 4 4 C 1.53001 * 109.47371 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46917 * 65.00051 * 4 3 2 6 6 C 1.36942 * 120.00115 * 264.48581 * 5 4 3 7 7 H 1.07993 * 120.00205 * 145.70113 * 6 5 4 8 8 C 1.38817 * 119.99972 * 325.70281 * 6 5 4 9 9 N 1.31621 * 119.99621 * 338.03058 * 8 6 5 10 10 Si 1.86792 * 120.00207 * 158.02623 * 8 6 5 11 11 H 1.48504 * 109.47156 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47056 * 119.99565 * 10 8 6 13 13 H 1.48496 * 109.47440 * 239.99880 * 10 8 6 14 14 C 1.46494 * 119.99971 * 84.48861 * 5 4 3 15 15 C 1.50706 * 109.47053 * 89.99922 * 14 5 4 16 16 C 1.38242 * 119.97976 * 260.01866 * 15 14 5 17 17 C 1.38182 * 120.03807 * 179.97438 * 16 15 14 18 18 C 1.38486 * 119.99955 * 0.03035 * 17 16 15 19 19 F 1.35108 * 120.01560 * 179.97438 * 18 17 16 20 20 C 1.38417 * 119.96545 * 359.69265 * 18 17 16 21 21 C 1.38337 * 119.95490 * 0.55942 * 20 18 17 22 22 Cl 1.73607 * 119.99524 * 179.73903 * 21 20 18 23 23 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46514 * 299.99901 * 1 2 3 25 25 H 1.08997 * 109.47562 * 59.99559 * 1 2 3 26 26 H 1.09006 * 109.46709 * 59.99974 * 3 2 1 27 27 H 1.09004 * 109.47066 * 300.00469 * 3 2 1 28 28 H 1.09000 * 109.46833 * 305.00368 * 4 3 2 29 29 H 1.09001 * 109.46796 * 185.00412 * 4 3 2 30 30 H 0.97002 * 119.99615 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.47328 * 330.00096 * 14 5 4 32 32 H 1.09006 * 109.47358 * 209.99681 * 14 5 4 33 33 H 1.08003 * 119.98186 * 0.02562 * 16 15 14 34 34 H 1.07996 * 120.00024 * 180.02562 * 17 16 15 35 35 H 1.07999 * 120.02143 * 180.32523 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2055 -0.7846 -1.3049 7 1 3.9868 -1.3352 -2.2078 8 6 4.7197 -1.4444 -0.1970 9 7 5.3806 -0.7720 0.7213 10 14 4.4734 -3.2865 -0.0095 11 1 3.7033 -3.8036 -1.1692 12 1 5.7960 -3.9597 0.0455 13 1 3.7258 -3.5610 1.2438 14 6 4.1700 1.3873 -2.4490 15 6 5.5916 1.8860 -2.4902 16 6 5.8843 3.1729 -2.0790 17 6 7.1874 3.6313 -2.1157 18 6 8.2009 2.8014 -2.5653 19 9 9.4750 3.2494 -2.6018 20 6 7.9087 1.5109 -2.9716 21 6 6.6028 1.0555 -2.9391 22 17 6.2342 -0.5607 -3.4549 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5681 0.8409 29 1 3.9786 2.1765 0.0890 30 1 5.7402 -1.2331 1.4953 31 1 3.4877 2.2367 -2.4205 32 1 3.9689 0.7893 -3.3380 33 1 5.0943 3.8203 -1.7280 34 1 7.4155 4.6366 -1.7939 35 1 8.6991 0.8613 -3.3174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069584313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = -61.194590 kcal Electronic energy + Delta-G solvation = -21066.116997 eV Core-core repulsion = 17619.037243 eV Total energy + Delta-G solvation = -3447.079755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.86931 -40.16227 -38.67922 -37.06879 -36.91763 -33.59724 -32.02324 -31.74476 -29.98348 -27.15502 -26.95770 -24.80812 -23.93442 -22.87858 -21.58704 -18.73862 -18.59779 -17.42302 -17.30857 -16.80177 -16.59806 -16.44376 -16.26121 -15.55263 -15.45946 -15.33804 -15.04163 -14.60726 -14.46497 -13.76363 -13.48512 -13.37525 -12.91965 -12.79076 -12.50755 -12.47058 -12.24483 -12.17086 -12.06371 -11.88648 -11.77581 -11.59828 -11.29449 -10.33948 -10.26058 -9.80866 -9.36499 -8.44750 -7.68188 -5.15072 0.20155 0.24759 1.42146 1.44949 1.50632 1.55950 2.54915 2.68959 3.27507 3.35530 3.48902 3.81026 3.89035 4.04905 4.11135 4.36275 4.48376 4.59907 4.63673 4.69552 4.79550 4.80787 4.87084 4.92800 5.03600 5.06519 5.13513 5.15320 5.30416 5.59415 5.85994 5.90671 5.93681 6.54694 6.74509 7.33100 8.00761 8.48157 9.31663 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.006763 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.079382 B = 4139.259444 C = 4996.012626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.054 3.946 4 C 0.141 3.859 5 N -0.574 5.574 6 C -0.196 4.196 7 H 0.052 0.948 8 C -0.024 4.024 9 N -0.915 5.915 10 Si 0.922 3.078 11 H -0.274 1.274 12 H -0.302 1.302 13 H -0.298 1.298 14 C 0.174 3.826 15 C -0.097 4.097 16 C -0.078 4.078 17 C -0.146 4.146 18 C 0.081 3.919 19 F -0.144 7.144 20 C -0.164 4.164 21 C -0.001 4.001 22 Cl -0.059 7.059 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.242 0.758 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 9.720 -5.570 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.024 4.024 4 C 0.015 3.985 5 N -0.293 5.293 6 C -0.327 4.327 7 H 0.069 0.931 8 C -0.220 4.220 9 N -0.562 5.562 10 Si 0.753 3.247 11 H -0.199 1.199 12 H -0.230 1.230 13 H -0.225 1.225 14 C 0.048 3.952 15 C -0.101 4.101 16 C -0.097 4.097 17 C -0.165 4.165 18 C 0.061 3.939 19 F -0.123 7.123 20 C -0.183 4.183 21 C -0.029 4.029 22 Cl -0.030 7.030 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.597 9.329 -5.489 11.131 hybrid contribution 0.311 -1.298 0.400 1.393 sum -2.286 8.032 -5.089 9.779 Atomic orbital electron populations 1.22800 0.81603 1.02502 1.00055 1.88125 1.19571 1.29034 1.95211 1.23240 0.96602 0.83880 0.98676 1.20983 0.89480 0.96683 0.91358 1.44010 1.74603 1.03643 1.07000 1.18885 1.32017 0.83421 0.98371 0.93054 1.25217 0.98203 0.98684 0.99894 1.70056 1.37930 1.35231 1.12965 0.85896 0.76466 0.84970 0.77323 1.19887 1.23014 1.22522 1.20172 0.88928 0.94852 0.91204 1.21167 0.99220 0.93428 0.96334 1.21099 0.96650 0.94373 0.97547 1.21400 0.91961 1.01377 1.01721 1.17501 0.79306 0.93177 1.03947 1.91460 1.36785 1.89346 1.94672 1.20997 0.96319 0.95921 1.05096 1.20599 0.93788 0.87249 1.01276 1.98366 1.94672 1.21226 1.88711 0.90212 0.93675 0.93673 0.93549 0.93645 0.91100 0.92964 0.94879 0.90437 0.92675 0.82110 0.81919 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.32 10.44 -148.98 -1.56 -17.88 16 3 C 0.05 1.95 6.28 71.98 0.45 2.40 16 4 C 0.14 6.01 5.63 86.38 0.49 6.50 16 5 N -0.57 -25.61 2.39 -706.35 -1.69 -27.30 16 6 C -0.20 -10.01 7.09 84.03 0.60 -9.41 16 7 H 0.05 2.72 7.38 -2.91 -0.02 2.70 16 8 C -0.02 -1.31 4.92 84.86 0.42 -0.90 16 9 N -0.92 -52.26 11.35 21.65 0.25 -52.01 16 10 Si 0.92 46.10 29.61 68.60 2.03 48.13 16 11 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 13 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 14 C 0.17 6.39 5.41 85.64 0.46 6.85 16 15 C -0.10 -3.46 5.47 -19.84 -0.11 -3.57 16 16 C -0.08 -2.25 9.66 22.26 0.22 -2.04 16 17 C -0.15 -4.02 10.03 22.32 0.22 -3.80 16 18 C 0.08 2.55 7.30 22.37 0.16 2.71 16 19 F -0.14 -4.42 17.27 44.97 0.78 -3.64 16 20 C -0.16 -5.69 9.81 22.34 0.22 -5.47 16 21 C 0.00 -0.05 6.31 22.32 0.14 0.09 16 22 Cl -0.06 -2.36 24.79 -2.72 -0.07 -2.43 16 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.05 1.45 8.12 -2.38 -0.02 1.43 16 28 H 0.07 3.68 5.36 -2.39 -0.01 3.67 16 29 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 30 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.08 2.35 7.91 -2.39 -0.02 2.33 16 32 H 0.05 2.09 7.25 -2.38 -0.02 2.07 16 33 H 0.16 3.62 8.04 -2.91 -0.02 3.59 16 34 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -62.21 315.25 5.35 -56.86 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.09 Total: 2.85 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.52 Total: -4.58 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.44 Total: -79.31 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.56 Total: -17.88 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.64 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.07 Total: -2.43 kcal Total: -62.21 5.35 -56.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069584313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.338 kcal (2) G-P(sol) polarization free energy of solvation -62.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds