Wall clock time and date at job start Wed Apr 15 2020 11:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99555 * 2 1 4 4 H 1.48500 * 109.47391 * 269.99470 * 3 2 1 5 5 H 1.48500 * 109.47581 * 30.00128 * 3 2 1 6 6 H 1.48509 * 109.47155 * 149.99837 * 3 2 1 7 7 C 1.37872 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47659 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47618 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99915 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46970 * 324.99831 * 12 11 10 14 14 C 1.52993 * 109.46936 * 85.00303 * 12 11 10 15 15 O 1.42898 * 109.47348 * 65.00000 * 14 12 11 16 16 C 1.50699 * 109.46863 * 205.00271 * 12 11 10 17 17 C 1.38268 * 119.97848 * 140.00287 * 16 12 11 18 18 C 1.38215 * 120.06203 * 179.97438 * 17 16 12 19 19 C 1.38324 * 120.01452 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.02401 * 180.02562 * 19 18 17 21 21 C 1.38546 * 119.94878 * 359.97438 * 19 18 17 22 22 F 1.35102 * 120.02936 * 180.02562 * 21 19 18 23 23 C 1.38195 * 119.97621 * 319.97627 * 16 12 11 24 24 H 0.96992 * 120.00053 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47175 * 59.99516 * 9 7 2 26 26 H 1.08996 * 109.47117 * 299.99823 * 9 7 2 27 27 H 1.09003 * 109.46996 * 59.99684 * 10 9 7 28 28 H 1.09010 * 109.46760 * 300.00175 * 10 9 7 29 29 H 1.00900 * 110.99713 * 56.04835 * 11 10 9 30 30 H 1.09007 * 109.46761 * 184.99726 * 14 12 11 31 31 H 1.08996 * 109.47184 * 304.99795 * 14 12 11 32 32 H 0.96699 * 114.00198 * 179.97438 * 15 14 12 33 33 H 1.08002 * 119.96207 * 0.24767 * 17 16 12 34 34 H 1.07995 * 119.98851 * 179.97438 * 18 17 16 35 35 H 1.08007 * 120.00528 * 359.97438 * 23 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 2.4355 -6.0758 0.0006 13 1 3.3179 -5.8284 -0.5896 14 6 2.8552 -6.3929 1.4372 15 8 1.7158 -6.8296 2.1809 16 6 1.7506 -7.2766 -0.5994 17 6 2.4488 -8.1202 -1.4436 18 6 1.8224 -9.2223 -1.9944 19 6 0.4957 -9.4822 -1.7018 20 17 -0.2911 -10.8667 -2.3930 21 6 -0.2045 -8.6372 -0.8560 22 9 -1.5002 -8.8898 -0.5688 23 6 0.4251 -7.5342 -0.3050 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8721 -3.6043 -0.8895 29 1 0.8743 -4.9846 -0.7800 30 1 3.6083 -7.1810 1.4302 31 1 3.2701 -5.4978 1.9005 32 1 1.9083 -7.0490 3.1028 33 1 3.4858 -7.9201 -1.6692 34 1 2.3688 -9.8802 -2.6539 35 1 -0.1194 -6.8753 0.3552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096006517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:12 Heat of formation + Delta-G solvation = -82.764520 kcal Electronic energy + Delta-G solvation = -19958.688208 eV Core-core repulsion = 16510.673111 eV Total energy + Delta-G solvation = -3448.015097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.95489 -39.73313 -37.42163 -36.50494 -35.35677 -33.19557 -31.53758 -30.82470 -29.09983 -27.36915 -24.40838 -23.46860 -22.75020 -20.63108 -20.43462 -17.73481 -17.33348 -16.57406 -16.51548 -16.26313 -15.78453 -15.66577 -14.51737 -14.48137 -14.14472 -13.90276 -13.71239 -13.46759 -13.10878 -12.84934 -12.61409 -12.27903 -12.11304 -11.84490 -11.45138 -11.23493 -11.06570 -10.97445 -10.79164 -10.55703 -10.09536 -9.83435 -9.45481 -9.18702 -9.03127 -8.72364 -8.37770 -7.92845 -6.01672 -4.04829 0.79938 1.01114 1.84367 3.30016 3.30233 3.36728 3.39349 3.96363 4.24190 4.40280 4.48727 4.57088 4.66211 4.93509 5.15743 5.27174 5.34260 5.41764 5.53608 5.59650 5.67081 5.76822 5.90151 5.91053 6.21855 6.27227 6.37981 6.62148 6.91545 7.37603 7.67479 7.73075 7.81216 7.87960 8.04944 8.39659 9.02417 9.59126 11.09640 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.003226 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.638452 B = 8676.483868 C = 8974.900621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.675 5.675 12 C 0.123 3.877 13 H 0.066 0.934 14 C 0.093 3.907 15 O -0.554 6.554 16 C -0.046 4.046 17 C -0.117 4.117 18 C -0.089 4.089 19 C -0.078 4.078 20 Cl -0.060 7.060 21 C 0.104 3.896 22 F -0.128 7.128 23 C -0.097 4.097 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.017 0.983 29 H 0.340 0.660 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.371 0.629 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -20.675 -1.568 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.307 5.307 12 C 0.013 3.987 13 H 0.084 0.916 14 C 0.015 3.985 15 O -0.358 6.358 16 C -0.047 4.047 17 C -0.136 4.136 18 C -0.108 4.108 19 C -0.106 4.106 20 Cl -0.031 7.031 21 C 0.084 3.916 22 F -0.107 7.107 23 C -0.116 4.116 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.159 0.841 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.217 0.783 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.544 -20.579 -1.510 21.128 hybrid contribution 0.802 0.714 -0.439 1.160 sum 5.346 -19.865 -1.949 20.664 Atomic orbital electron populations 1.69971 1.06027 1.26643 1.50433 1.25003 0.94838 0.99221 0.95274 0.86591 0.79811 0.83491 0.78061 1.20704 1.21183 1.19905 1.21150 0.92925 0.90994 1.51126 0.92790 1.19052 0.93977 0.90254 0.97854 1.22261 0.97106 0.88349 0.98581 1.60689 1.18894 1.01157 1.49941 1.20610 0.94942 0.88889 0.94288 0.91603 1.22115 0.87424 0.97519 0.91486 1.86576 1.34379 1.88698 1.26122 1.19856 0.93339 0.96386 0.95128 1.21088 1.00557 0.94393 0.97545 1.20838 0.91815 0.98030 1.00126 1.21001 0.94785 0.92841 1.01928 1.98372 1.80517 1.40869 1.83373 1.17490 0.79465 0.96112 0.98572 1.91537 1.33414 1.93770 1.91945 1.21174 0.95317 0.95651 0.99415 0.92943 0.96790 0.95505 0.92265 0.96483 0.84098 0.94175 0.92783 0.78330 0.84631 0.84229 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.06 1.29 5.42 -3.83 -0.02 1.27 16 11 N -0.68 -11.33 5.64 -107.95 -0.61 -11.94 16 12 C 0.12 1.61 2.65 -68.87 -0.18 1.43 16 13 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 14 C 0.09 1.11 6.79 37.15 0.25 1.37 16 15 O -0.55 -6.98 12.04 -35.23 -0.42 -7.41 16 16 C -0.05 -0.57 4.59 -104.63 -0.48 -1.05 16 17 C -0.12 -1.17 9.67 -39.58 -0.38 -1.56 16 18 C -0.09 -0.88 9.83 -39.56 -0.39 -1.27 16 19 C -0.08 -0.92 6.33 -39.44 -0.25 -1.17 16 20 Cl -0.06 -0.67 28.62 -51.86 -1.48 -2.15 16 21 C 0.10 1.38 7.28 -39.39 -0.29 1.10 16 22 F -0.13 -1.84 16.84 2.25 0.04 -1.80 16 23 C -0.10 -1.30 7.98 -39.52 -0.32 -1.62 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.17 7.36 -51.93 -0.38 0.78 16 28 H 0.02 0.33 8.06 -51.92 -0.42 -0.09 16 29 H 0.34 5.74 7.99 -39.29 -0.31 5.43 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 32 H 0.37 3.09 9.12 45.56 0.42 3.51 16 33 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 2.39 7.47 -52.48 -0.39 2.00 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -31.12 319.19 -8.09 -39.21 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.52 Total: 3.20 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.61 Total: -14.32 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.13 Total: -37.95 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.42 Total: -7.41 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.12 -8.09 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096006517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.559 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds