Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99555 * 2 1 4 4 H 1.48500 * 109.47391 * 269.99470 * 3 2 1 5 5 H 1.48500 * 109.47581 * 30.00128 * 3 2 1 6 6 H 1.48509 * 109.47155 * 149.99837 * 3 2 1 7 7 C 1.37872 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47659 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47618 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99915 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46970 * 324.99831 * 12 11 10 14 14 C 1.52993 * 109.46936 * 85.00303 * 12 11 10 15 15 O 1.42898 * 109.47348 * 65.00000 * 14 12 11 16 16 C 1.50699 * 109.46863 * 205.00271 * 12 11 10 17 17 C 1.38268 * 119.97848 * 140.00287 * 16 12 11 18 18 C 1.38215 * 120.06203 * 179.97438 * 17 16 12 19 19 C 1.38324 * 120.01452 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.02401 * 180.02562 * 19 18 17 21 21 C 1.38546 * 119.94878 * 359.97438 * 19 18 17 22 22 F 1.35102 * 120.02936 * 180.02562 * 21 19 18 23 23 C 1.38195 * 119.97621 * 319.97627 * 16 12 11 24 24 H 0.96992 * 120.00053 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47175 * 59.99516 * 9 7 2 26 26 H 1.08996 * 109.47117 * 299.99823 * 9 7 2 27 27 H 1.09003 * 109.46996 * 59.99684 * 10 9 7 28 28 H 1.09010 * 109.46760 * 300.00175 * 10 9 7 29 29 H 1.00900 * 110.99713 * 56.04835 * 11 10 9 30 30 H 1.09007 * 109.46761 * 184.99726 * 14 12 11 31 31 H 1.08996 * 109.47184 * 304.99795 * 14 12 11 32 32 H 0.96699 * 114.00198 * 179.97438 * 15 14 12 33 33 H 1.08002 * 119.96207 * 0.24767 * 17 16 12 34 34 H 1.07995 * 119.98851 * 179.97438 * 18 17 16 35 35 H 1.08007 * 120.00528 * 359.97438 * 23 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 2.4355 -6.0758 0.0006 13 1 3.3179 -5.8284 -0.5896 14 6 2.8552 -6.3929 1.4372 15 8 1.7158 -6.8296 2.1809 16 6 1.7506 -7.2766 -0.5994 17 6 2.4488 -8.1202 -1.4436 18 6 1.8224 -9.2223 -1.9944 19 6 0.4957 -9.4822 -1.7018 20 17 -0.2911 -10.8667 -2.3930 21 6 -0.2045 -8.6372 -0.8560 22 9 -1.5002 -8.8898 -0.5688 23 6 0.4251 -7.5342 -0.3050 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8721 -3.6043 -0.8895 29 1 0.8743 -4.9846 -0.7800 30 1 3.6083 -7.1810 1.4302 31 1 3.2701 -5.4978 1.9005 32 1 1.9083 -7.0490 3.1028 33 1 3.4858 -7.9201 -1.6692 34 1 2.3688 -9.8802 -2.6539 35 1 -0.1194 -6.8753 0.3552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096006517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -104.263589 kcal Electronic energy + Delta-G solvation = -19959.620478 eV Core-core repulsion = 16510.673111 eV Total energy + Delta-G solvation = -3448.947367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.083 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.99897 -40.67819 -38.43514 -37.42006 -36.66111 -35.05773 -32.97320 -31.72974 -30.57070 -28.63133 -26.12763 -24.49683 -23.84251 -22.30927 -21.50186 -18.74612 -18.55548 -18.19263 -17.47597 -17.42186 -16.87808 -16.82240 -16.43019 -15.73707 -15.23332 -15.05002 -14.74368 -14.57766 -14.33070 -14.10198 -13.85766 -13.82568 -13.22502 -13.03812 -12.88849 -12.80469 -12.49968 -12.31494 -12.00171 -11.91960 -11.78928 -11.37831 -11.26671 -10.74572 -10.55459 -9.95334 -9.64855 -9.26123 -8.19026 -6.30784 -0.11456 0.12195 0.95589 1.41454 1.42984 1.53956 2.39156 2.42407 3.02474 3.14719 3.22273 3.44274 3.64037 3.76077 4.10137 4.25834 4.30600 4.49962 4.56598 4.63041 4.65072 4.66255 4.74389 4.89752 5.00319 5.03936 5.11804 5.38894 5.48518 5.68652 5.69708 5.80769 6.14862 6.28579 6.47446 6.87582 7.06651 7.38873 8.93157 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.003226 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.638452 B = 8676.483868 C = 8974.900621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.685 5.685 12 C 0.121 3.879 13 H 0.087 0.913 14 C 0.092 3.908 15 O -0.576 6.576 16 C -0.052 4.052 17 C -0.103 4.103 18 C -0.079 4.079 19 C -0.083 4.083 20 Cl -0.056 7.056 21 C 0.081 3.919 22 F -0.142 7.142 23 C -0.108 4.108 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.010 1.010 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.337 0.663 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.387 0.613 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 -21.467 -2.326 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.006 4.006 10 C -0.043 4.043 11 N -0.317 5.317 12 C 0.011 3.989 13 H 0.104 0.896 14 C 0.014 3.986 15 O -0.383 6.383 16 C -0.052 4.052 17 C -0.121 4.121 18 C -0.098 4.098 19 C -0.110 4.110 20 Cl -0.027 7.027 21 C 0.061 3.939 22 F -0.121 7.121 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.155 0.845 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.236 0.764 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.398 -21.398 -2.254 22.753 hybrid contribution -0.108 0.877 -0.200 0.906 sum 7.290 -20.521 -2.453 21.915 Atomic orbital electron populations 1.70122 1.07946 1.27743 1.51560 1.26004 0.95724 1.03493 0.94726 0.85417 0.78682 0.78272 0.78475 1.19756 1.21043 1.18432 1.21626 0.93644 0.92104 1.50662 0.91752 1.18905 0.94378 0.92527 0.94788 1.21842 0.95480 0.87843 0.99112 1.60575 1.19710 1.01261 1.50126 1.20767 0.94736 0.87587 0.95787 0.89572 1.22176 0.87722 0.98223 0.90483 1.86548 1.35331 1.88782 1.27633 1.19820 0.92805 0.96659 0.95963 1.21428 1.01843 0.93222 0.95605 1.21224 0.90869 0.98075 0.99585 1.21179 0.95555 0.92712 1.01576 1.98373 1.80693 1.40482 1.83167 1.17666 0.79243 0.96990 0.99954 1.91492 1.34403 1.93929 1.92259 1.20992 0.96135 0.95745 0.99889 0.92847 0.99420 0.99110 0.91892 0.95550 0.84521 0.90904 0.93778 0.76419 0.81156 0.81055 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.66 5.23 29.85 0.16 1.82 16 10 C 0.09 3.39 5.42 86.30 0.47 3.86 16 11 N -0.69 -23.09 5.64 -495.45 -2.80 -25.89 16 12 C 0.12 2.95 2.65 44.17 0.12 3.07 16 13 H 0.09 1.79 7.66 -2.39 -0.02 1.77 16 14 C 0.09 2.03 6.79 71.98 0.49 2.52 16 15 O -0.58 -14.19 12.04 -148.98 -1.79 -15.98 16 16 C -0.05 -1.17 4.59 -19.87 -0.09 -1.26 16 17 C -0.10 -1.68 9.67 22.27 0.22 -1.46 16 18 C -0.08 -1.30 9.83 22.28 0.22 -1.08 16 19 C -0.08 -1.82 6.33 22.36 0.14 -1.68 16 20 Cl -0.06 -1.17 28.62 -2.72 -0.08 -1.24 16 21 C 0.08 2.18 7.28 22.39 0.16 2.34 16 22 F -0.14 -4.23 16.84 44.97 0.76 -3.48 16 23 C -0.11 -2.95 7.98 22.31 0.18 -2.77 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 27 H 0.06 2.44 7.36 -2.39 -0.02 2.42 16 28 H 0.03 0.99 8.06 -2.38 -0.02 0.97 16 29 H 0.34 11.68 7.99 -89.69 -0.72 10.96 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.04 1.05 7.35 -2.39 -0.02 1.03 16 32 H 0.39 6.16 9.12 -74.06 -0.68 5.49 16 33 H 0.17 1.64 8.04 -2.91 -0.02 1.61 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.13 4.30 7.47 -2.91 -0.02 4.28 16 Total: -1.00 -69.02 319.19 0.89 -68.13 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.26 Total: 14.19 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 2.75 Total: -24.52 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -2.51 Total: -82.98 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.79 Total: -15.98 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.76 Total: -3.48 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.24 kcal Total: -69.02 0.89 -68.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096006517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.132 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds