Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21591 * 119.99915 * 359.97438 * 14 13 3 16 16 C 1.47576 * 120.00337 * 180.02562 * 14 13 3 17 17 C 1.39748 * 120.13087 * 359.71527 * 16 14 13 18 18 C 1.37920 * 119.88017 * 179.74862 * 17 16 14 19 19 F 1.35097 * 119.93452 * 180.25854 * 18 17 16 20 20 C 1.38945 * 120.14089 * 0.53280 * 18 17 16 21 21 F 1.35100 * 119.86713 * 179.72280 * 20 18 17 22 22 C 1.38449 * 120.26648 * 359.74325 * 20 18 17 23 23 C 1.38211 * 120.12528 * 359.97438 * 22 20 18 24 24 F 1.35099 * 120.07608 * 180.02562 * 23 22 20 25 25 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.08001 * 120.06238 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.93909 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3414 2.6320 -0.4321 16 6 0.0448 3.3237 -2.6282 17 6 0.9371 3.3669 -3.7028 18 6 0.5648 3.9799 -4.8809 19 9 1.4246 4.0177 -5.9222 20 6 -0.6907 4.5636 -4.9971 21 9 -1.0476 5.1675 -6.1518 22 6 -1.5773 4.5293 -3.9343 23 6 -1.2179 3.9129 -2.7507 24 9 -2.0840 3.8796 -1.7144 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 5.8763 0.4948 2.1200 31 1 2.2721 2.1230 -1.9977 32 1 1.9149 2.9172 -3.6125 33 1 -2.5518 4.9851 -4.0303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -158.394768 kcal Electronic energy + Delta-G solvation = -22634.054946 eV Core-core repulsion = 18630.963595 eV Total energy + Delta-G solvation = -4003.091351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.71185 -50.12616 -49.77077 -41.25910 -39.32444 -37.13202 -34.50743 -33.67681 -32.06742 -31.27272 -29.39650 -25.70766 -24.76608 -24.12986 -22.58799 -21.45665 -20.00699 -19.34136 -18.98184 -18.44588 -17.72640 -17.67820 -17.32636 -16.78595 -16.70757 -16.22909 -16.10741 -15.99246 -15.71258 -15.62338 -15.12365 -14.95301 -14.45266 -14.13306 -13.78647 -13.70270 -13.50880 -13.02200 -12.95043 -12.81511 -12.75287 -12.39888 -11.85389 -11.40813 -11.24363 -10.96166 -10.84969 -10.46859 -9.96259 -9.77569 -8.37340 -6.43178 -0.83925 -0.41012 1.28648 1.37465 1.43402 1.46375 2.14021 2.27008 2.30726 2.35895 2.71623 2.98934 3.09718 3.16767 3.43160 3.80163 4.18919 4.23769 4.29402 4.32706 4.40259 4.45491 4.63138 4.66675 4.84346 5.01823 5.11507 5.21702 5.34761 5.38177 5.51811 5.57617 6.11490 6.57878 6.73597 7.15814 7.31593 8.77534 Molecular weight = 287.09amu Principal moments of inertia in cm(-1) A = 0.024781 B = 0.004682 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.624720 B = 5979.401772 C = 6756.048973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.027 0.973 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.689 5.689 14 C 0.546 3.454 15 O -0.560 6.560 16 C -0.157 4.157 17 C -0.054 4.054 18 C 0.055 3.945 19 F -0.123 7.123 20 C 0.129 3.871 21 F -0.114 7.114 22 C -0.153 4.153 23 C 0.170 3.830 24 F -0.115 7.115 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.270 0.730 31 H 0.407 0.593 32 H 0.176 0.824 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 5.260 -13.595 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.045 0.955 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.760 3.240 10 H -0.185 1.185 11 H -0.223 1.223 12 H -0.183 1.183 13 N -0.338 5.338 14 C 0.333 3.667 15 O -0.441 6.441 16 C -0.161 4.161 17 C -0.073 4.073 18 C 0.034 3.966 19 F -0.101 7.101 20 C 0.108 3.892 21 F -0.092 7.092 22 C -0.172 4.172 23 C 0.149 3.851 24 F -0.093 7.093 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.244 0.756 32 H 0.193 0.807 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.674 5.194 -12.857 19.474 hybrid contribution 0.409 -0.254 0.378 0.612 sum -13.264 4.941 -12.479 18.870 Atomic orbital electron populations 1.21775 0.95250 1.00669 1.01575 1.22219 0.95776 0.98307 1.01339 1.18870 0.93469 0.89779 0.83409 0.95507 1.21253 0.90110 1.38826 1.06955 0.92172 1.25503 0.95651 0.95845 0.99761 1.69966 1.10284 1.46125 1.30734 0.86086 0.79417 0.80039 0.78415 1.18521 1.22271 1.18347 1.45905 1.15070 1.55385 1.17465 1.18124 0.82437 0.78999 0.87127 1.90824 1.51993 1.60477 1.40763 1.19931 0.95178 1.05347 0.95681 1.21204 1.00840 0.96236 0.89016 1.17387 0.88154 1.04544 0.86484 1.91579 1.68430 1.94806 1.55305 1.17399 0.92165 0.96178 0.83445 1.91596 1.91718 1.80256 1.45661 1.21037 1.03202 1.03423 0.89561 1.17415 0.86395 0.96295 0.84952 1.91622 1.67629 1.93708 1.56320 0.92209 0.94354 0.92851 0.90950 0.93661 0.92082 0.75611 0.80651 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.51 71.98 0.61 -4.41 16 2 C -0.14 -5.68 5.11 30.59 0.16 -5.52 16 3 C 0.25 11.19 1.83 44.25 0.08 11.27 16 4 H 0.03 1.36 6.63 -2.39 -0.02 1.35 16 5 C -0.53 -27.84 9.31 25.60 0.24 -27.60 16 6 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 7 C 0.03 1.78 5.45 84.66 0.46 2.24 16 8 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 9 Si 0.93 43.57 24.41 68.60 1.67 45.24 16 10 H -0.26 -11.40 6.84 99.48 0.68 -10.72 16 11 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.26 -11.98 6.52 99.48 0.65 -11.33 16 13 N -0.69 -25.00 4.97 -449.26 -2.23 -27.23 16 14 C 0.55 19.02 6.33 86.71 0.55 19.57 16 15 O -0.56 -23.36 12.46 -4.00 -0.05 -23.41 16 16 C -0.16 -4.05 5.88 -20.05 -0.12 -4.17 16 17 C -0.05 -1.09 9.51 22.56 0.21 -0.87 16 18 C 0.05 1.04 7.29 22.36 0.16 1.20 16 19 F -0.12 -2.50 17.17 44.97 0.77 -1.73 16 20 C 0.13 2.22 7.31 22.49 0.16 2.39 16 21 F -0.11 -1.98 17.17 44.97 0.77 -1.21 16 22 C -0.15 -2.48 9.99 22.31 0.22 -2.26 16 23 C 0.17 3.98 7.28 22.66 0.16 4.14 16 24 F -0.11 -3.26 15.54 44.97 0.70 -2.56 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 27 H 0.05 1.94 5.64 -2.39 -0.01 1.92 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.05 1.96 3.24 -2.39 -0.01 1.96 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.41 12.49 6.57 -92.71 -0.61 11.88 16 32 H 0.18 3.05 6.40 -2.91 -0.02 3.04 16 33 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -64.08 286.91 5.34 -58.74 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.50 Total: 10.53 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 2.91 Total: -4.01 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.93 Total: -81.59 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 2.24 Total: -5.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.67 Total: 45.24 kcal Total: -64.08 5.34 -58.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.655 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds