Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21582 * 119.99834 * 0.02562 * 14 13 3 16 16 C 1.47574 * 120.00133 * 179.97438 * 14 13 3 17 17 C 1.39759 * 120.13144 * 359.97438 * 16 14 13 18 18 C 1.37916 * 119.87648 * 180.02562 * 17 16 14 19 19 F 1.35097 * 119.92659 * 179.97438 * 18 17 16 20 20 C 1.38950 * 120.14481 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.86387 * 180.02562 * 20 18 17 22 22 C 1.38451 * 120.26623 * 359.97438 * 20 18 17 23 23 C 1.38210 * 120.12283 * 359.72542 * 22 20 18 24 24 F 1.35101 * 120.07352 * 180.29511 * 23 22 20 25 25 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 28 28 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 29 29 H 1.09001 * 109.47713 * 239.99364 * 2 1 3 30 30 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 32 32 H 1.07991 * 120.05798 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.93562 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3389 2.6308 0.4491 16 6 0.0607 3.3181 2.6442 17 6 0.9573 3.3535 3.7157 18 6 0.5938 3.9681 4.8956 19 9 1.4595 4.0024 5.9322 20 6 -0.6613 4.5511 5.0210 21 9 -1.0112 5.1521 6.1792 22 6 -1.5541 4.5195 3.9633 23 6 -1.1991 3.9119 2.7737 24 9 -2.0689 3.8869 1.7403 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.8033 0.3145 -3.1314 31 1 2.2841 2.1188 1.9977 32 1 1.9328 2.9004 3.6199 33 1 -2.5281 4.9747 4.0664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = -165.910175 kcal Electronic energy + Delta-G solvation = -22542.765090 eV Core-core repulsion = 18539.347846 eV Total energy + Delta-G solvation = -4003.417244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.70301 -50.11469 -49.76163 -41.16127 -39.25666 -36.94109 -34.43769 -33.33475 -31.97403 -31.24316 -28.92345 -25.72730 -24.96644 -24.13331 -22.33201 -21.32098 -19.92902 -19.27333 -18.97043 -18.23841 -17.68407 -17.48819 -17.15858 -16.73298 -16.62256 -16.20873 -16.07912 -15.94827 -15.68414 -15.61113 -15.01427 -14.59660 -14.43194 -13.96371 -13.52688 -13.47530 -13.25181 -12.93064 -12.90786 -12.82206 -12.61227 -12.19201 -12.08501 -11.61630 -11.08386 -10.89609 -10.52958 -10.45345 -9.91503 -9.67016 -8.17627 -6.31769 -0.81611 -0.39910 1.46676 1.47280 1.48683 1.57092 2.20458 2.35764 2.36889 2.49241 2.73089 3.11155 3.14812 3.18901 3.48246 3.84818 4.21827 4.31225 4.40696 4.48392 4.54595 4.63801 4.67503 4.74694 5.06474 5.24954 5.36630 5.41425 5.48466 5.60317 5.75606 5.87477 6.07351 6.75390 6.84517 7.30645 7.45725 8.90597 Molecular weight = 287.09amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.004585 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.789420 B = 6105.402406 C = 7028.648826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C 0.276 3.724 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.075 0.925 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.692 5.692 14 C 0.540 3.460 15 O -0.566 6.566 16 C -0.156 4.156 17 C -0.053 4.053 18 C 0.056 3.944 19 F -0.122 7.122 20 C 0.128 3.872 21 F -0.114 7.114 22 C -0.153 4.153 23 C 0.166 3.834 24 F -0.117 7.117 25 H 0.048 0.952 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.179 0.821 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 6.112 16.257 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.342 5.342 14 C 0.327 3.673 15 O -0.446 6.446 16 C -0.161 4.161 17 C -0.072 4.072 18 C 0.036 3.964 19 F -0.100 7.100 20 C 0.107 3.893 21 F -0.092 7.092 22 C -0.172 4.172 23 C 0.145 3.855 24 F -0.095 7.095 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.196 0.804 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.486 6.027 15.435 17.795 hybrid contribution 1.027 -0.084 -0.149 1.041 sum -5.459 5.944 15.287 17.286 Atomic orbital electron populations 1.21698 0.96818 0.99412 1.00414 1.21719 0.93933 0.98892 1.00774 1.18464 0.94027 0.89214 0.80962 0.97522 1.21529 0.91154 1.43358 1.02642 0.90661 1.25733 1.03009 0.94702 0.94715 1.70113 1.37414 1.43949 1.03891 0.85441 0.79394 0.79009 0.76999 1.19612 1.21627 1.18796 1.46167 1.14684 1.55320 1.17991 1.18198 0.82792 0.79272 0.87042 1.90828 1.51777 1.60600 1.41438 1.20015 0.95239 1.05034 0.95785 1.21199 1.00843 0.96260 0.88922 1.17354 0.88010 1.04459 0.86574 1.91577 1.67985 1.94813 1.55623 1.17379 0.92210 0.96385 0.83331 1.91594 1.91927 1.80395 1.45300 1.21027 1.03156 1.03533 0.89519 1.17475 0.86458 0.96517 0.85004 1.91618 1.67455 1.93747 1.56696 0.93328 0.95468 0.93669 0.93086 0.92541 0.92638 0.75913 0.80409 0.78828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.52 71.98 0.61 -4.85 16 2 C -0.11 -5.33 5.49 30.59 0.17 -5.17 16 3 C 0.28 13.52 2.11 44.25 0.09 13.61 16 4 H 0.01 0.41 7.55 -2.38 -0.02 0.39 16 5 C -0.55 -27.70 8.67 25.60 0.22 -27.48 16 6 H 0.08 3.50 7.73 -2.91 -0.02 3.48 16 7 C 0.02 1.00 5.19 84.65 0.44 1.44 16 8 N -0.92 -51.65 12.00 21.45 0.26 -51.39 16 9 Si 0.97 40.82 29.54 68.60 2.03 42.85 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.69 -26.65 4.97 -449.26 -2.23 -28.89 16 14 C 0.54 20.49 6.35 86.71 0.55 21.04 16 15 O -0.57 -26.21 12.47 -3.98 -0.05 -26.26 16 16 C -0.16 -4.33 5.88 -20.05 -0.12 -4.44 16 17 C -0.05 -1.11 9.51 22.56 0.21 -0.89 16 18 C 0.06 1.09 7.29 22.36 0.16 1.26 16 19 F -0.12 -2.45 17.17 44.97 0.77 -1.67 16 20 C 0.13 2.30 7.31 22.49 0.16 2.46 16 21 F -0.11 -2.04 17.17 44.97 0.77 -1.27 16 22 C -0.15 -2.69 9.99 22.31 0.22 -2.47 16 23 C 0.17 4.23 7.28 22.66 0.16 4.39 16 24 F -0.12 -3.65 15.54 44.97 0.70 -2.95 16 25 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 26 H 0.03 1.28 7.87 -2.39 -0.02 1.26 16 27 H 0.04 1.88 5.64 -2.38 -0.01 1.87 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.96 6.64 -2.39 -0.02 2.95 16 30 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.40 12.56 6.55 -92.71 -0.61 11.96 16 32 H 0.18 3.07 6.40 -2.92 -0.02 3.05 16 33 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -63.78 294.81 5.72 -58.06 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.57 Total: 12.62 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 2.90 Total: -1.10 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.98 Total: -80.28 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 2.24 Total: -5.89 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -63.78 5.72 -58.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.850 kcal (2) G-P(sol) polarization free energy of solvation -63.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds