Wall clock time and date at job start Wed Apr 15 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.34772 * 120.00110 * 64.99735 * 14 11 10 16 16 O 1.21284 * 120.00168 * 0.02562 * 15 14 11 17 17 C 1.50709 * 119.99747 * 179.97438 * 15 14 11 18 18 H 1.08994 * 115.54933 * 325.72401 * 17 15 14 19 19 C 1.53000 * 117.49588 * 111.39627 * 17 15 14 20 20 C 1.52995 * 60.00061 * 107.48701 * 19 17 15 21 21 H 1.09005 * 117.49905 * 252.50489 * 20 19 17 22 22 C 1.53000 * 117.49824 * 107.48564 * 20 19 17 23 23 C 1.53004 * 117.49772 * 179.97438 * 22 20 19 24 24 C 1.53005 * 117.49694 * 111.37548 * 22 20 19 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 0.97002 * 119.99347 * 244.99779 * 14 11 10 31 31 H 1.09004 * 117.49516 * 214.98016 * 19 17 15 32 32 H 1.09001 * 117.50080 * 359.97438 * 19 17 15 33 33 H 1.08998 * 115.55100 * 325.70956 * 22 20 19 34 34 H 1.08991 * 117.49865 * 0.02562 * 23 22 20 35 35 H 1.09004 * 117.49294 * 145.02663 * 23 22 20 36 36 H 1.08994 * 117.49923 * 214.97916 * 24 22 20 37 37 H 1.09005 * 117.49901 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.3463 -6.5124 1.0589 16 8 3.2233 -5.7713 2.0110 17 6 4.4218 -7.5682 1.0598 18 1 4.1654 -8.5008 0.5574 19 6 5.8748 -7.0964 0.9753 20 6 5.3268 -7.6537 2.2905 21 1 5.1443 -6.9464 3.0996 22 6 5.8026 -9.0422 2.7223 23 6 5.2550 -9.5992 4.0379 24 6 6.7076 -9.1278 3.9530 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8906 30 1 2.6187 -6.9856 -0.7608 31 1 6.5745 -7.7190 0.4175 32 1 6.0529 -6.0225 0.9186 33 1 5.9854 -9.7492 1.9131 34 1 4.5554 -8.9767 4.5955 35 1 5.0769 -10.6732 4.0943 36 1 7.4854 -9.8913 3.9536 37 1 6.9643 -8.1947 4.4548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181263063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:19 Heat of formation + Delta-G solvation = -76.407053 kcal Electronic energy + Delta-G solvation = -20470.161057 eV Core-core repulsion = 17147.925652 eV Total energy + Delta-G solvation = -3322.235405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52120 -38.26988 -36.80709 -35.73240 -35.36281 -34.50741 -34.24221 -31.06523 -25.76212 -25.06520 -23.89812 -22.63215 -22.00373 -21.20522 -20.40234 -19.42738 -18.06823 -17.65735 -16.76267 -16.17789 -15.98215 -15.63097 -15.14533 -14.91753 -14.46948 -13.78007 -13.63886 -13.42292 -12.90871 -12.89439 -12.54495 -12.13780 -11.93046 -11.84791 -11.73632 -11.69754 -11.55096 -11.26578 -11.06352 -10.95200 -10.58434 -10.52629 -10.44070 -10.33657 -10.25016 -10.02993 -9.81915 -8.70327 -8.45947 -6.47806 -4.20533 0.39255 1.89831 2.60750 3.13816 3.39444 3.41867 3.60756 3.74876 3.86748 4.00059 4.25229 4.37717 4.47230 4.48884 4.59332 4.76461 4.83120 4.89737 4.93568 4.95283 5.27827 5.34333 5.35112 5.47205 5.54397 5.57204 5.60413 5.74397 5.82769 5.98135 6.29638 6.57507 6.94066 7.05000 7.41131 7.94875 8.29442 8.72218 9.51572 10.92174 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.003815 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.209461 B = 7336.917792 C = 8138.850518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.016 3.984 3 Si 1.074 2.926 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.599 4.599 8 H 0.056 0.944 9 C 0.016 3.984 10 C -0.569 4.569 11 S 2.565 3.435 12 O -0.938 6.938 13 O -0.954 6.954 14 N -1.054 6.054 15 C 0.563 3.437 16 O -0.489 6.489 17 C -0.192 4.192 18 H 0.132 0.868 19 C -0.141 4.141 20 C -0.088 4.088 21 H 0.123 0.877 22 C -0.129 4.129 23 C -0.177 4.177 24 C -0.173 4.173 25 H 0.270 0.730 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.430 0.570 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.105 -19.635 1.638 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.188 4.188 3 Si 0.902 3.098 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.639 4.639 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.703 4.703 11 S 2.665 3.335 12 O -0.928 6.928 13 O -0.945 6.945 14 N -0.815 5.815 15 C 0.350 3.650 16 O -0.361 6.361 17 C -0.215 4.215 18 H 0.150 0.850 19 C -0.178 4.178 20 C -0.106 4.106 21 H 0.141 0.859 22 C -0.147 4.147 23 C -0.214 4.214 24 C -0.210 4.210 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.265 0.735 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.867 -17.689 2.362 22.001 hybrid contribution 0.736 -1.880 -0.583 2.101 sum 13.602 -19.569 1.779 23.899 Atomic orbital electron populations 1.70784 1.06872 1.30803 1.45528 1.25990 0.96533 1.02917 0.93397 0.83469 0.74857 0.74900 0.76621 1.20523 1.21230 1.21274 1.21820 0.94393 0.90586 1.57097 0.92592 1.19097 0.93308 0.92138 0.97747 1.30218 1.13429 1.15748 1.10955 1.06701 0.74995 0.77277 0.74484 1.93602 1.70314 1.84330 1.44566 1.93594 1.70540 1.85298 1.45047 1.55317 1.49125 1.50284 1.26780 1.19640 0.80810 0.83884 0.80701 1.90905 1.69416 1.43207 1.32562 1.22355 0.91663 1.00247 1.07206 0.85000 1.23107 0.92022 1.02633 1.00077 1.21882 0.99761 0.97016 0.91974 0.85948 1.21722 1.04879 0.95825 0.92254 1.22983 0.97010 1.01335 1.00031 1.22946 0.93629 1.03373 1.01058 0.91937 0.95487 0.95675 0.85890 0.84963 0.73540 0.87201 0.87540 0.87527 0.88337 0.88658 0.88651 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.65 55.43 0.76 -27.17 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.11 29.90 -169.99 -5.08 20.02 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.60 -17.11 9.11 -34.44 -0.31 -17.42 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.42 4.29 -27.88 -0.12 0.30 16 10 C -0.57 -11.51 5.82 37.16 0.22 -11.30 16 11 S 2.57 47.14 5.11 -107.50 -0.55 46.59 16 12 O -0.94 -20.80 17.04 -64.80 -1.10 -21.91 16 13 O -0.95 -18.96 18.08 -57.54 -1.04 -20.00 16 14 N -1.05 -13.62 5.60 31.22 0.17 -13.44 16 15 C 0.56 7.66 7.35 -10.98 -0.08 7.58 16 16 O -0.49 -8.67 14.36 -11.61 -0.17 -8.84 16 17 C -0.19 -1.77 5.91 -91.77 -0.54 -2.31 16 18 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.14 -1.09 9.95 -26.73 -0.27 -1.35 16 20 C -0.09 -0.79 5.36 -90.62 -0.49 -1.28 16 21 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 22 C -0.13 -0.94 5.85 -90.62 -0.53 -1.47 16 23 C -0.18 -1.32 10.25 -26.75 -0.27 -1.59 16 24 C -0.17 -1.17 10.25 -26.75 -0.27 -1.44 16 25 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 26 H 0.03 0.74 8.01 -51.93 -0.42 0.32 16 27 H 0.03 0.66 8.01 -51.93 -0.42 0.25 16 28 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 29 H 0.13 2.65 7.19 -51.92 -0.37 2.28 16 30 H 0.43 3.70 8.79 -34.46 -0.30 3.39 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -37.39 332.58 -9.98 -47.36 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.21 Total: 2.29 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.77 Total: -29.91 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.93 Total: -40.62 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.31 Total: -50.75 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Atomic # 16 Polarization: 47.14 SS G_CDS: -0.55 Total: 46.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.39 -9.98 -47.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181263063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.045 kcal (2) G-P(sol) polarization free energy of solvation -37.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds