Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.34772 * 120.00110 * 64.99735 * 14 11 10 16 16 O 1.21284 * 120.00168 * 0.02562 * 15 14 11 17 17 C 1.50709 * 119.99747 * 179.97438 * 15 14 11 18 18 H 1.08994 * 115.54933 * 325.72401 * 17 15 14 19 19 C 1.53000 * 117.49588 * 111.39627 * 17 15 14 20 20 C 1.52995 * 60.00061 * 107.48701 * 19 17 15 21 21 H 1.09005 * 117.49905 * 252.50489 * 20 19 17 22 22 C 1.53000 * 117.49824 * 107.48564 * 20 19 17 23 23 C 1.53004 * 117.49772 * 179.97438 * 22 20 19 24 24 C 1.53005 * 117.49694 * 111.37548 * 22 20 19 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 0.97002 * 119.99347 * 244.99779 * 14 11 10 31 31 H 1.09004 * 117.49516 * 214.98016 * 19 17 15 32 32 H 1.09001 * 117.50080 * 359.97438 * 19 17 15 33 33 H 1.08998 * 115.55100 * 325.70956 * 22 20 19 34 34 H 1.08991 * 117.49865 * 0.02562 * 23 22 20 35 35 H 1.09004 * 117.49294 * 145.02663 * 23 22 20 36 36 H 1.08994 * 117.49923 * 214.97916 * 24 22 20 37 37 H 1.09005 * 117.49901 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.3463 -6.5124 1.0589 16 8 3.2233 -5.7713 2.0110 17 6 4.4218 -7.5682 1.0598 18 1 4.1654 -8.5008 0.5574 19 6 5.8748 -7.0964 0.9753 20 6 5.3268 -7.6537 2.2905 21 1 5.1443 -6.9464 3.0996 22 6 5.8026 -9.0422 2.7223 23 6 5.2550 -9.5992 4.0379 24 6 6.7076 -9.1278 3.9530 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8906 30 1 2.6187 -6.9856 -0.7608 31 1 6.5745 -7.7190 0.4175 32 1 6.0529 -6.0225 0.9186 33 1 5.9854 -9.7492 1.9131 34 1 4.5554 -8.9767 4.5955 35 1 5.0769 -10.6732 4.0943 36 1 7.4854 -9.8913 3.9536 37 1 6.9643 -8.1947 4.4548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181263063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -103.479343 kcal Electronic energy + Delta-G solvation = -20471.335000 eV Core-core repulsion = 17147.925652 eV Total energy + Delta-G solvation = -3323.409348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58231 -39.01324 -38.39413 -37.37206 -36.39040 -36.03431 -35.68851 -33.08395 -27.24825 -26.59778 -24.53357 -24.01170 -23.17664 -22.17231 -21.13313 -20.75029 -19.53110 -18.97415 -18.57712 -17.68018 -16.95201 -16.69941 -16.44117 -16.07212 -15.68067 -15.41483 -15.17984 -14.99949 -14.17512 -14.09156 -13.97292 -13.60313 -13.51585 -13.39640 -12.93229 -12.56914 -12.48814 -12.41429 -12.33265 -12.29966 -12.16192 -11.95376 -11.89565 -11.83563 -11.44081 -11.01799 -10.78908 -10.65740 -10.44949 -8.79802 -6.53945 -1.14486 0.81812 1.28625 1.51264 1.60248 1.79762 2.38995 2.49090 2.53833 2.88302 3.05302 3.07155 3.23243 3.53122 3.65408 3.76207 3.86032 3.92138 4.02171 4.20340 4.28590 4.32143 4.36306 4.42783 4.81755 4.83840 4.91468 4.92283 4.95509 5.06985 5.16707 5.29737 5.38307 5.60960 5.74983 6.02247 6.34923 6.39739 7.28816 8.60227 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.003815 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.209461 B = 7336.917792 C = 8138.850518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.040 4.040 3 Si 1.124 2.876 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.617 4.617 8 H 0.066 0.934 9 C 0.006 3.994 10 C -0.574 4.574 11 S 2.601 3.399 12 O -0.979 6.979 13 O -0.968 6.968 14 N -1.031 6.031 15 C 0.558 3.442 16 O -0.536 6.536 17 C -0.191 4.191 18 H 0.170 0.830 19 C -0.121 4.121 20 C -0.101 4.101 21 H 0.093 0.907 22 C -0.123 4.123 23 C -0.190 4.190 24 C -0.170 4.170 25 H 0.255 0.745 26 H 0.001 0.999 27 H 0.013 0.987 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.452 0.548 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.940 -21.265 0.423 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.238 4.238 3 Si 0.943 3.057 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.655 4.655 8 H 0.084 0.916 9 C -0.033 4.033 10 C -0.706 4.706 11 S 2.699 3.301 12 O -0.969 6.969 13 O -0.958 6.958 14 N -0.798 5.798 15 C 0.347 3.653 16 O -0.410 6.410 17 C -0.214 4.214 18 H 0.187 0.813 19 C -0.158 4.158 20 C -0.120 4.120 21 H 0.111 0.889 22 C -0.141 4.141 23 C -0.227 4.227 24 C -0.207 4.207 25 H 0.064 0.936 26 H 0.019 0.981 27 H 0.031 0.969 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.293 0.707 31 H 0.163 0.837 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.709 -19.345 1.112 24.945 hybrid contribution -0.118 -1.465 -0.169 1.480 sum 15.592 -20.810 0.942 26.020 Atomic orbital electron populations 1.70923 1.08106 1.29944 1.47972 1.27697 0.96565 1.07300 0.92223 0.82876 0.74104 0.70348 0.78379 1.20794 1.19279 1.18544 1.22302 0.95206 0.91814 1.56223 0.91567 1.18997 0.94170 0.94188 0.95922 1.30147 1.12642 1.15416 1.12424 1.05331 0.74775 0.76830 0.73142 1.93553 1.71933 1.84867 1.46553 1.93569 1.71439 1.85445 1.45388 1.54753 1.47910 1.49223 1.27926 1.20566 0.81039 0.84087 0.79591 1.90898 1.70571 1.45266 1.34276 1.22477 0.90741 1.00018 1.08119 0.81260 1.23272 0.91031 1.02774 0.98753 1.21885 1.00505 0.97832 0.91754 0.88878 1.21784 1.04513 0.94997 0.92787 1.23022 0.97285 1.01826 1.00569 1.23011 0.93612 1.03448 1.00620 0.93563 0.98107 0.96862 0.83002 0.84962 0.70699 0.83682 0.88494 0.85041 0.90293 0.87324 0.86862 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.22 13.65 21.45 0.29 -58.93 16 2 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 3 Si 1.12 50.00 29.90 68.60 2.05 52.05 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.62 -35.60 9.11 25.60 0.23 -35.37 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.01 0.33 4.29 29.85 0.13 0.46 16 10 C -0.57 -23.31 5.82 71.98 0.42 -22.90 16 11 S 2.60 95.34 5.11 -56.49 -0.29 95.06 16 12 O -0.98 -44.49 17.04 -120.71 -2.06 -46.55 16 13 O -0.97 -37.90 18.08 -127.65 -2.31 -40.21 16 14 N -1.03 -24.79 5.60 -173.53 -0.97 -25.77 16 15 C 0.56 14.42 7.35 87.66 0.64 15.06 16 16 O -0.54 -19.20 14.36 13.37 0.19 -19.01 16 17 C -0.19 -2.95 5.91 -11.54 -0.07 -3.01 16 18 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 19 C -0.12 -1.46 9.95 30.59 0.30 -1.16 16 20 C -0.10 -1.64 5.36 -10.80 -0.06 -1.70 16 21 H 0.09 2.08 7.67 -2.38 -0.02 2.07 16 22 C -0.12 -1.46 5.85 -10.79 -0.06 -1.52 16 23 C -0.19 -2.59 10.25 30.58 0.31 -2.27 16 24 C -0.17 -1.98 10.25 30.58 0.31 -1.66 16 25 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 26 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 27 H 0.01 0.73 8.01 -2.38 -0.02 0.71 16 28 H 0.15 5.15 8.14 -2.39 -0.02 5.13 16 29 H 0.13 5.38 7.19 -2.39 -0.02 5.36 16 30 H 0.45 6.39 8.79 -96.75 -0.85 5.54 16 31 H 0.15 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -84.06 332.58 -0.13 -84.19 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.33 Total: 15.14 kcal Atomic # 6 Polarization: -58.60 SS G_CDS: 2.63 Total: -55.97 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -0.68 Total: -84.70 kcal Atomic # 8 Polarization: -101.59 SS G_CDS: -4.17 Total: -105.76 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Atomic # 16 Polarization: 95.34 SS G_CDS: -0.29 Total: 95.06 kcal Total: -84.06 -0.13 -84.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181263063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.294 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds