Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54033 * 291.62070 * 11 10 9 13 13 O 1.42093 * 110.54359 * 68.37403 * 11 10 9 14 14 N 1.65606 * 104.44724 * 180.02562 * 11 10 9 15 15 C 1.34773 * 120.00253 * 64.99636 * 14 11 10 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00239 * 180.02562 * 15 14 11 18 18 H 1.08999 * 115.54571 * 34.41806 * 17 15 14 19 19 C 1.52997 * 117.49979 * 248.75169 * 17 15 14 20 20 C 1.52996 * 117.49924 * 180.09020 * 17 15 14 21 21 H 1.08997 * 117.50010 * 359.97438 * 20 17 15 22 22 C 1.53002 * 117.49469 * 215.00231 * 20 17 15 23 23 C 1.52995 * 117.49725 * 128.62226 * 22 20 17 24 24 C 1.52991 * 60.00225 * 252.50688 * 23 22 20 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 0.97001 * 119.99859 * 245.00017 * 14 11 10 31 31 H 1.09003 * 117.49863 * 0.02562 * 19 17 15 32 32 H 1.08999 * 117.50143 * 145.01447 * 19 17 15 33 33 H 1.09004 * 115.54675 * 274.32822 * 22 20 17 34 34 H 1.09004 * 117.50247 * 0.02562 * 23 22 20 35 35 H 1.09003 * 117.49832 * 145.01554 * 23 22 20 36 36 H 1.08999 * 117.50180 * 252.51127 * 24 23 22 37 37 H 1.09007 * 117.52009 * 107.47608 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6639 -5.4201 1.2355 13 8 0.6646 -5.4193 -1.2385 14 7 2.5204 -6.3928 -0.0005 15 6 3.3462 -6.5126 1.0578 16 8 3.2232 -5.7714 2.0100 17 6 4.4224 -7.5676 1.0583 18 1 4.8714 -7.7814 0.0884 19 6 4.2692 -8.7326 2.0381 20 6 5.3261 -7.6543 2.2898 21 1 5.1426 -6.9480 3.0995 22 6 6.7910 -8.0346 2.0655 23 6 7.8584 -7.1300 2.6846 24 6 7.6299 -7.1188 1.1719 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 2.6185 -6.9858 -0.7618 31 1 3.3898 -8.7363 2.6822 32 1 4.6178 -9.7128 1.7130 33 1 6.9983 -9.1040 2.0259 34 1 7.5170 -6.2642 3.2521 35 1 8.7682 -7.6042 3.0527 36 1 8.3893 -7.5856 0.5447 37 1 7.1379 -6.2455 0.7433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181263075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = -72.114321 kcal Electronic energy + Delta-G solvation = -20552.196531 eV Core-core repulsion = 17230.147273 eV Total energy + Delta-G solvation = -3322.049258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48129 -38.25096 -36.70203 -35.62536 -35.21338 -34.41422 -33.89300 -31.18270 -25.87264 -25.53271 -23.76123 -22.66232 -21.72207 -21.25665 -20.10525 -19.26252 -18.00945 -17.57448 -16.52515 -16.04627 -15.79642 -15.44062 -15.04130 -14.91908 -14.58367 -14.51166 -13.46588 -13.38318 -12.78195 -12.56118 -12.41193 -11.92552 -11.80596 -11.73095 -11.68920 -11.62194 -11.25173 -11.24009 -11.07963 -10.99706 -10.85601 -10.46928 -10.37741 -10.35115 -10.21972 -9.93191 -9.70162 -9.18004 -8.49520 -6.11884 -4.17324 0.49566 1.96692 2.67942 3.26783 3.27687 3.33477 3.36289 3.64140 3.95317 4.13010 4.29273 4.37818 4.41735 4.60039 4.65271 4.75807 4.82384 4.94187 4.98951 5.14967 5.23461 5.37114 5.39769 5.56412 5.61365 5.65152 5.72373 5.82499 5.87897 5.99419 6.45626 6.64960 7.28426 7.35055 7.47228 7.81162 8.16996 8.85567 9.47188 10.99275 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.004302 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.199267 B = 6506.401184 C = 7738.974747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.575 4.575 11 S 2.565 3.435 12 O -0.939 6.939 13 O -0.955 6.955 14 N -1.055 6.055 15 C 0.562 3.438 16 O -0.489 6.489 17 C -0.192 4.192 18 H 0.133 0.867 19 C -0.141 4.141 20 C -0.089 4.089 21 H 0.124 0.876 22 C -0.129 4.129 23 C -0.173 4.173 24 C -0.177 4.177 25 H 0.265 0.735 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.429 0.571 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.958 -18.652 0.875 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.666 3.334 12 O -0.929 6.929 13 O -0.945 6.945 14 N -0.815 5.815 15 C 0.349 3.651 16 O -0.361 6.361 17 C -0.215 4.215 18 H 0.151 0.849 19 C -0.178 4.178 20 C -0.108 4.108 21 H 0.142 0.858 22 C -0.147 4.147 23 C -0.210 4.210 24 C -0.214 4.214 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.264 0.736 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.765 -18.230 1.591 22.312 hybrid contribution 1.016 0.874 -0.611 1.473 sum 13.781 -17.356 0.980 22.184 Atomic orbital electron populations 1.69957 1.06118 1.27230 1.49544 1.25065 0.94989 0.99545 0.94850 0.86443 0.79664 0.82736 0.78286 1.20411 1.19755 1.20989 1.20975 0.93095 0.89581 1.52217 0.91976 1.18996 0.92629 0.90335 0.99032 1.30337 1.13708 1.16189 1.10745 1.06711 0.74993 0.77269 0.74466 1.93594 1.70325 1.84370 1.44599 1.93588 1.70538 1.85318 1.45066 1.55360 1.49103 1.50239 1.26844 1.19649 0.80794 0.83912 0.80789 1.90905 1.69577 1.42880 1.32723 1.22409 1.00563 1.00098 0.98396 0.84899 1.23133 1.01435 0.93243 0.99999 1.21923 0.89571 1.01673 0.97595 0.85812 1.21766 0.89799 0.97136 1.06040 1.23004 0.99831 1.02149 0.96047 1.23007 1.02684 1.02239 0.93507 0.92503 0.94580 0.94732 0.86052 0.85094 0.73620 0.87658 0.87315 0.87294 0.88355 0.88710 0.88729 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 10 C -0.58 -11.59 5.82 37.16 0.22 -11.37 16 11 S 2.57 47.36 5.11 -107.50 -0.55 46.81 16 12 O -0.94 -20.87 17.04 -64.80 -1.10 -21.98 16 13 O -0.95 -19.12 18.08 -57.54 -1.04 -20.16 16 14 N -1.05 -13.65 5.60 31.22 0.17 -13.48 16 15 C 0.56 7.63 7.35 -10.99 -0.08 7.55 16 16 O -0.49 -8.64 14.36 -11.61 -0.17 -8.80 16 17 C -0.19 -1.77 5.83 -91.77 -0.54 -2.31 16 18 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.14 -1.11 9.96 -26.69 -0.27 -1.38 16 20 C -0.09 -0.80 5.38 -90.58 -0.49 -1.29 16 21 H 0.12 1.35 7.67 -51.93 -0.40 0.95 16 22 C -0.13 -0.94 5.87 -90.62 -0.53 -1.48 16 23 C -0.17 -1.29 10.25 -26.74 -0.27 -1.56 16 24 C -0.18 -1.31 10.18 -26.74 -0.27 -1.58 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 29 H 0.13 2.60 7.19 -51.93 -0.37 2.23 16 30 H 0.43 3.72 8.79 -34.47 -0.30 3.42 16 31 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -36.46 333.79 -9.99 -46.44 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.27 Total: 1.85 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -2.78 Total: -26.17 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.91 Total: -39.48 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -2.31 Total: -50.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 47.36 SS G_CDS: -0.55 Total: 46.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.46 -9.99 -46.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181263075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.672 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds