Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00408 * 2 1 4 4 H 1.48503 * 109.47091 * 270.00351 * 3 2 1 5 5 H 1.48501 * 109.46955 * 30.00274 * 3 2 1 6 6 H 1.48498 * 109.47171 * 150.00243 * 3 2 1 7 7 C 1.37882 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46856 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47014 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54412 * 68.37276 * 11 10 9 13 13 O 1.42101 * 110.54313 * 291.62112 * 11 10 9 14 14 N 1.65600 * 104.45044 * 179.97438 * 11 10 9 15 15 C 1.34779 * 119.99669 * 64.72408 * 14 11 10 16 16 O 1.21277 * 120.00226 * 0.02562 * 15 14 11 17 17 C 1.50708 * 119.99745 * 179.97438 * 15 14 11 18 18 H 1.09001 * 115.54893 * 82.50359 * 17 15 14 19 19 C 1.52996 * 117.49897 * 296.83483 * 17 15 14 20 20 C 1.52998 * 117.49916 * 228.21175 * 17 15 14 21 21 H 1.09000 * 117.49525 * 214.98288 * 20 17 15 22 22 C 1.53004 * 117.50024 * 359.97438 * 20 17 15 23 23 C 1.52997 * 117.50265 * 253.75951 * 22 20 17 24 24 C 1.52992 * 117.50010 * 185.13380 * 22 20 17 25 25 H 0.96997 * 119.99488 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47415 * 59.99499 * 9 7 2 27 27 H 1.09005 * 109.47023 * 299.99238 * 9 7 2 28 28 H 1.08993 * 109.47561 * 59.99535 * 10 9 7 29 29 H 1.08999 * 109.47324 * 299.99491 * 10 9 7 30 30 H 0.97001 * 120.00117 * 244.99528 * 14 11 10 31 31 H 1.09002 * 117.49959 * 359.97438 * 19 17 15 32 32 H 1.08999 * 117.50154 * 145.00081 * 19 17 15 33 33 H 1.09002 * 115.54443 * 39.46884 * 22 20 17 34 34 H 1.09000 * 117.49572 * 359.97438 * 23 22 20 35 35 H 1.08998 * 117.49811 * 145.01813 * 23 22 20 36 36 H 1.08998 * 117.50054 * 214.98254 * 24 22 20 37 37 H 1.08996 * 117.50024 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 16 5.8354 -2.6368 -0.0014 12 8 6.3341 -2.1476 1.2360 13 8 6.3340 -2.1453 -1.2380 14 7 6.2486 -4.2404 -0.0023 15 6 5.9340 -5.0167 -1.0582 16 8 5.3488 -4.5408 -2.0078 17 6 6.3105 -6.4760 -1.0592 18 1 5.6274 -7.1381 -0.5271 19 6 7.8006 -6.8212 -1.0230 20 6 6.9987 -7.0271 -2.3096 21 1 6.7683 -8.0520 -2.6004 22 6 7.2515 -6.0547 -3.4635 23 6 6.3661 -6.1854 -4.7044 24 6 7.8291 -6.6298 -4.7583 25 1 -0.4849 0.8401 0.0004 26 1 3.8745 -0.6809 0.8904 27 1 3.8752 -0.6798 -0.8896 28 1 3.6584 -3.1495 -0.8919 29 1 3.6578 -3.1515 0.8879 30 1 6.7134 -4.6219 0.7588 31 1 8.5086 -5.9928 -0.9988 32 1 8.0979 -7.7104 -0.4671 33 1 7.5670 -5.0526 -3.1732 34 1 5.6037 -6.9644 -4.6989 35 1 6.0987 -5.2690 -5.2306 36 1 8.5243 -6.0059 -5.3200 37 1 8.0286 -7.7009 -4.7882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181263092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -64.967838 kcal Electronic energy + Delta-G solvation = -20894.305862 eV Core-core repulsion = 17572.566499 eV Total energy + Delta-G solvation = -3321.739364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54873 -38.02778 -36.82443 -35.75906 -35.42377 -34.34383 -33.95202 -31.49988 -26.06067 -25.46837 -23.90315 -22.40951 -21.60127 -21.23024 -20.20262 -19.37971 -17.88165 -17.44395 -16.87224 -16.51455 -15.74745 -15.51977 -15.18620 -14.67129 -14.28368 -14.12283 -13.82852 -13.65306 -12.83921 -12.70212 -12.56727 -11.94272 -11.87703 -11.81080 -11.75574 -11.54710 -11.45344 -11.28433 -11.24185 -11.14876 -10.88250 -10.44729 -10.35763 -10.20266 -10.08089 -9.67468 -9.63301 -9.35389 -8.65616 -6.15827 -4.17195 0.37404 2.03040 2.58666 3.12182 3.27592 3.34451 3.38024 3.86587 3.87070 4.01250 4.21906 4.36382 4.47260 4.51871 4.67596 4.87584 4.95719 5.01134 5.06586 5.10784 5.15594 5.34818 5.46926 5.52699 5.54213 5.56582 5.75197 5.87648 6.05401 6.13946 6.25676 6.58503 6.79691 6.92613 7.44680 7.54189 8.36996 8.85217 9.43332 10.96562 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.004306 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.163608 B = 6501.470805 C = 6917.109102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.569 4.569 11 S 2.564 3.436 12 O -0.955 6.955 13 O -0.939 6.939 14 N -1.055 6.055 15 C 0.562 3.438 16 O -0.475 6.475 17 C -0.185 4.185 18 H 0.143 0.857 19 C -0.160 4.160 20 C -0.084 4.084 21 H 0.117 0.883 22 C -0.129 4.129 23 C -0.160 4.160 24 C -0.180 4.180 25 H 0.267 0.733 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.430 0.570 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.191 -16.849 -2.212 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.703 4.703 11 S 2.664 3.336 12 O -0.945 6.945 13 O -0.929 6.929 14 N -0.817 5.817 15 C 0.347 3.653 16 O -0.344 6.344 17 C -0.208 4.208 18 H 0.161 0.839 19 C -0.197 4.197 20 C -0.103 4.103 21 H 0.135 0.865 22 C -0.147 4.147 23 C -0.197 4.197 24 C -0.217 4.217 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.265 0.735 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.265 -15.685 -2.949 22.787 hybrid contribution -0.068 0.309 0.583 0.663 sum 16.197 -15.376 -2.366 22.458 Atomic orbital electron populations 1.69878 1.06193 1.27261 1.49930 1.24971 0.94827 0.99129 0.94104 0.86924 0.80650 0.83683 0.79188 1.19602 1.20710 1.18657 1.20816 0.87599 0.95005 1.52352 0.90335 1.19429 1.00062 0.87025 0.97964 1.30179 1.18659 1.09887 1.11622 1.06690 0.80127 0.72291 0.74512 1.93596 1.79518 1.76435 1.44999 1.93600 1.78454 1.76291 1.44541 1.55359 1.66747 1.32416 1.27194 1.19648 0.76914 0.87995 0.80697 1.90924 1.37019 1.74164 1.32335 1.22348 0.98430 0.93715 1.06320 0.83901 1.23181 0.91758 1.04095 1.00656 1.21814 1.01282 0.99166 0.88009 0.86525 1.21690 1.05610 0.98988 0.88385 1.22841 0.93038 1.03359 1.00487 1.22966 0.97274 1.01093 1.00367 0.92351 0.94876 0.95146 0.84480 0.85436 0.73519 0.87929 0.87253 0.87642 0.88754 0.88471 0.88849 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16 8 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.92 5.82 37.16 0.22 -10.70 16 11 S 2.56 44.25 5.11 -107.50 -0.55 43.70 16 12 O -0.95 -17.90 18.08 -57.54 -1.04 -18.94 16 13 O -0.94 -19.38 17.06 -64.74 -1.10 -20.48 16 14 N -1.06 -12.80 5.60 31.22 0.17 -12.63 16 15 C 0.56 7.24 6.39 -10.98 -0.07 7.17 16 16 O -0.47 -7.99 13.79 -11.40 -0.16 -8.15 16 17 C -0.19 -1.61 6.13 -91.77 -0.56 -2.17 16 18 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.16 -1.07 9.96 -26.73 -0.27 -1.34 16 20 C -0.08 -0.71 5.84 -90.62 -0.53 -1.24 16 21 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.13 -1.39 4.29 -90.62 -0.39 -1.77 16 23 C -0.16 -1.72 10.25 -26.73 -0.27 -1.99 16 24 C -0.18 -1.60 10.25 -26.74 -0.27 -1.88 16 25 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 27 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 28 H 0.14 2.63 7.17 -51.93 -0.37 2.25 16 29 H 0.13 2.13 8.14 -51.92 -0.42 1.70 16 30 H 0.43 3.48 8.79 -34.47 -0.30 3.18 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.11 1.38 7.54 -51.93 -0.39 0.99 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -36.22 327.77 -9.55 -45.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.22 Total: 2.49 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -2.69 Total: -27.22 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.95 Total: -39.14 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -2.30 Total: -47.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 44.25 SS G_CDS: -0.55 Total: 43.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.22 -9.55 -45.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181263092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.195 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds