Wall clock time and date at job start Wed Apr 15 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00408 * 2 1 4 4 H 1.48503 * 109.47091 * 270.00351 * 3 2 1 5 5 H 1.48501 * 109.46955 * 30.00274 * 3 2 1 6 6 H 1.48498 * 109.47171 * 150.00243 * 3 2 1 7 7 C 1.37882 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46856 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47014 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54412 * 68.37276 * 11 10 9 13 13 O 1.42101 * 110.54313 * 291.62112 * 11 10 9 14 14 N 1.65600 * 104.45044 * 179.97438 * 11 10 9 15 15 C 1.34779 * 119.99669 * 64.72408 * 14 11 10 16 16 O 1.21277 * 120.00226 * 0.02562 * 15 14 11 17 17 C 1.50708 * 119.99745 * 179.97438 * 15 14 11 18 18 H 1.09001 * 115.54893 * 82.50359 * 17 15 14 19 19 C 1.52996 * 117.49897 * 296.83483 * 17 15 14 20 20 C 1.52998 * 117.49916 * 228.21175 * 17 15 14 21 21 H 1.09000 * 117.49525 * 214.98288 * 20 17 15 22 22 C 1.53004 * 117.50024 * 359.97438 * 20 17 15 23 23 C 1.52997 * 117.50265 * 253.75951 * 22 20 17 24 24 C 1.52992 * 117.50010 * 185.13380 * 22 20 17 25 25 H 0.96997 * 119.99488 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47415 * 59.99499 * 9 7 2 27 27 H 1.09005 * 109.47023 * 299.99238 * 9 7 2 28 28 H 1.08993 * 109.47561 * 59.99535 * 10 9 7 29 29 H 1.08999 * 109.47324 * 299.99491 * 10 9 7 30 30 H 0.97001 * 120.00117 * 244.99528 * 14 11 10 31 31 H 1.09002 * 117.49959 * 359.97438 * 19 17 15 32 32 H 1.08999 * 117.50154 * 145.00081 * 19 17 15 33 33 H 1.09002 * 115.54443 * 39.46884 * 22 20 17 34 34 H 1.09000 * 117.49572 * 359.97438 * 23 22 20 35 35 H 1.08998 * 117.49811 * 145.01813 * 23 22 20 36 36 H 1.08998 * 117.50054 * 214.98254 * 24 22 20 37 37 H 1.08996 * 117.50024 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 16 5.8354 -2.6368 -0.0014 12 8 6.3341 -2.1476 1.2360 13 8 6.3340 -2.1453 -1.2380 14 7 6.2486 -4.2404 -0.0023 15 6 5.9340 -5.0167 -1.0582 16 8 5.3488 -4.5408 -2.0078 17 6 6.3105 -6.4760 -1.0592 18 1 5.6274 -7.1381 -0.5271 19 6 7.8006 -6.8212 -1.0230 20 6 6.9987 -7.0271 -2.3096 21 1 6.7683 -8.0520 -2.6004 22 6 7.2515 -6.0547 -3.4635 23 6 6.3661 -6.1854 -4.7044 24 6 7.8291 -6.6298 -4.7583 25 1 -0.4849 0.8401 0.0004 26 1 3.8745 -0.6809 0.8904 27 1 3.8752 -0.6798 -0.8896 28 1 3.6584 -3.1495 -0.8919 29 1 3.6578 -3.1515 0.8879 30 1 6.7134 -4.6219 0.7588 31 1 8.5086 -5.9928 -0.9988 32 1 8.0979 -7.7104 -0.4671 33 1 7.5670 -5.0526 -3.1732 34 1 5.6037 -6.9644 -4.6989 35 1 6.0987 -5.2690 -5.2306 36 1 8.5243 -6.0059 -5.3200 37 1 8.0286 -7.7009 -4.7882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181263092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:22 Heat of formation + Delta-G solvation = -91.700434 kcal Electronic energy + Delta-G solvation = -20895.465075 eV Core-core repulsion = 17572.566499 eV Total energy + Delta-G solvation = -3322.898576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52571 -38.87394 -38.29157 -37.28476 -36.22009 -35.95955 -35.40490 -33.54438 -27.99871 -26.38026 -24.56278 -23.31193 -23.16634 -22.29423 -21.07292 -20.68721 -19.53717 -18.76501 -18.28348 -17.50317 -16.99593 -16.75917 -16.48239 -16.32117 -15.68219 -15.35795 -14.93948 -14.86114 -14.60970 -13.94013 -13.83942 -13.43257 -13.35183 -13.29318 -13.13907 -13.06322 -12.52091 -12.34470 -12.28424 -12.17132 -12.11859 -11.95525 -11.79591 -11.72803 -11.33054 -11.19712 -10.93936 -10.87389 -10.38346 -8.39318 -6.45895 -1.05590 0.99652 1.30847 1.31626 1.36211 1.42113 2.27351 2.44774 2.50425 2.94197 2.97570 3.15116 3.23572 3.52724 3.78847 3.85241 3.94287 3.96826 4.04399 4.22561 4.31534 4.35661 4.46048 4.48219 4.81633 4.92164 4.97731 4.98982 5.02406 5.06796 5.20187 5.28748 5.35545 5.42362 5.68337 6.12914 6.45709 6.59374 7.18252 8.76427 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.004306 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.163608 B = 6501.470805 C = 6917.109102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.927 3.073 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.047 0.953 9 C -0.015 4.015 10 C -0.580 4.580 11 S 2.602 3.398 12 O -0.966 6.966 13 O -0.974 6.974 14 N -1.035 6.035 15 C 0.557 3.443 16 O -0.519 6.519 17 C -0.192 4.192 18 H 0.175 0.825 19 C -0.136 4.136 20 C -0.092 4.092 21 H 0.143 0.857 22 C -0.143 4.143 23 C -0.180 4.180 24 C -0.158 4.158 25 H 0.271 0.729 26 H 0.041 0.959 27 H 0.028 0.972 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.451 0.549 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.575 -18.646 -1.287 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.184 4.184 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.569 4.569 8 H 0.065 0.935 9 C -0.054 4.054 10 C -0.712 4.712 11 S 2.699 3.301 12 O -0.956 6.956 13 O -0.964 6.964 14 N -0.802 5.802 15 C 0.345 3.655 16 O -0.391 6.391 17 C -0.214 4.214 18 H 0.192 0.808 19 C -0.173 4.173 20 C -0.111 4.111 21 H 0.161 0.839 22 C -0.161 4.161 23 C -0.217 4.217 24 C -0.195 4.195 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.291 0.709 31 H 0.114 0.886 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 18.655 -17.486 -1.989 25.646 hybrid contribution -0.809 0.761 0.263 1.142 sum 17.845 -16.725 -1.726 24.518 Atomic orbital electron populations 1.70006 1.07910 1.28509 1.51388 1.25884 0.95688 1.03076 0.93774 0.86002 0.80075 0.79211 0.79829 1.18861 1.19467 1.16922 1.21124 0.90068 0.93953 1.51797 0.93471 1.19374 0.97443 0.90482 0.98075 1.30177 1.21502 1.06961 1.12559 1.05312 0.78289 0.73149 0.73307 1.93576 1.79023 1.77734 1.45298 1.93560 1.78429 1.78074 1.46298 1.54863 1.66507 1.30590 1.28262 1.20570 0.75644 0.89721 0.79614 1.90917 1.39102 1.75177 1.33950 1.22465 1.00776 0.90502 1.07663 0.80765 1.23356 0.89874 1.05017 0.99041 1.21963 1.02147 0.99501 0.87462 0.83950 1.21701 1.06040 0.98507 0.89888 1.22847 0.94695 1.02949 1.01251 1.23037 0.95499 1.02403 0.98513 0.91993 0.94036 0.95394 0.85051 0.83247 0.70908 0.88595 0.83627 0.90869 0.87859 0.90805 0.88877 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.01 0.86 5.47 84.66 0.46 1.32 16 3 Si 0.93 44.52 27.47 68.60 1.88 46.40 16 4 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.41 16 7 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 9 C -0.01 -0.71 4.05 29.85 0.12 -0.59 16 10 C -0.58 -22.28 5.82 71.98 0.42 -21.86 16 11 S 2.60 87.65 5.11 -56.49 -0.29 87.36 16 12 O -0.97 -34.56 18.08 -127.65 -2.31 -36.86 16 13 O -0.97 -40.29 17.06 -120.77 -2.06 -42.35 16 14 N -1.03 -23.32 5.60 -173.53 -0.97 -24.29 16 15 C 0.56 13.64 6.39 87.66 0.56 14.20 16 16 O -0.52 -17.70 13.79 13.19 0.18 -17.52 16 17 C -0.19 -2.73 6.13 -11.54 -0.07 -2.80 16 18 H 0.18 1.43 8.14 -2.39 -0.02 1.41 16 19 C -0.14 -1.27 9.96 30.59 0.30 -0.96 16 20 C -0.09 -1.28 5.84 -10.79 -0.06 -1.34 16 21 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 22 C -0.14 -2.97 4.29 -10.80 -0.05 -3.02 16 23 C -0.18 -3.89 10.25 30.59 0.31 -3.58 16 24 C -0.16 -2.57 10.25 30.59 0.31 -2.26 16 25 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.04 1.93 7.20 -2.39 -0.02 1.92 16 27 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 28 H 0.13 5.19 7.17 -2.39 -0.02 5.17 16 29 H 0.15 4.92 8.14 -2.39 -0.02 4.90 16 30 H 0.45 6.01 8.79 -96.74 -0.85 5.16 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 1.97 7.54 -2.39 -0.02 1.96 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -81.34 327.77 -0.53 -81.87 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.18 Total: 15.30 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 2.56 Total: -51.56 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -0.67 Total: -82.63 kcal Atomic # 8 Polarization: -92.55 SS G_CDS: -4.19 Total: -96.74 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 16 Polarization: 87.65 SS G_CDS: -0.29 Total: 87.36 kcal Total: -81.34 -0.53 -81.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181263092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.834 kcal (2) G-P(sol) polarization free energy of solvation -81.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds